IVF0004712 (gene) Melon (IVF77) v1

Overview
NameIVF0004712
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionNBS-LRR type resistance protein
Locationchr04: 17671067 .. 17671330 (-)
RNA-Seq ExpressionIVF0004712
SyntenyIVF0004712
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTCTAGTAGAAGTCGTTTTAAAAGGTCCGAAACGACACCCGTTGACTTACCCCAGGAAAGGAAAGCTATCTCCAAACAAGCCTGCCGCGAGACCCGAGAACTTAAGCGTCAACTCCTTACTACCTTCAAGGGAGAAAAGTAGGGCCATATCTTATTCCAATATTCAAACTCGAATCGGATGTAGCAACATTAGGGAAATCATCGAAAACAATCCTTACCGAAGACTCACCGTGGCCCGGAGTGAAGGAAGGGAGGCTTAG

mRNA sequence

ATGACTCTAGTAGAAGTCGTTTTAAAAGGTCCGAAACGACACCCGTTGACTTACCCCAGGAAAGGAAAGCTATCTCCAAACAAGCCTGCCGCGAGACCCGAGAACTTAAGCGTCAACTCCTTACTACCTTCAAGGGAGAAAAGTAGGGCCATATCTTATTCCAATATTCAAACTCGAATCGGATGTAGCAACATTAGGGAAATCATCGAAAACAATCCTTACCGAAGACTCACCGTGGCCCGGAGTGAAGGAAGGGAGGCTTAG

Coding sequence (CDS)

ATGACTCTAGTAGAAGTCGTTTTAAAAGGTCCGAAACGACACCCGTTGACTTACCCCAGGAAAGGAAAGCTATCTCCAAACAAGCCTGCCGCGAGACCCGAGAACTTAAGCGTCAACTCCTTACTACCTTCAAGGGAGAAAAGTAGGGCCATATCTTATTCCAATATTCAAACTCGAATCGGATGTAGCAACATTAGGGAAATCATCGAAAACAATCCTTACCGAAGACTCACCGTGGCCCGGAGTGAAGGAAGGGAGGCTTAG

Protein sequence

MTLVEVVLKGPKRHPLTYPRKGKLSPNKPAARPENLSVNSLLPSREKSRAISYSNIQTRIGCSNIREIIENNPYRRLTVARSEGREA
Homology
BLAST of IVF0004712 vs. ExPASy TrEMBL
Match: A0A5A7TNL7 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold110G00460 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 7.0e-22
Identity = 58/69 (84.06%), Postives = 62/69 (89.86%), Query Frame = 0

Query: 19  PRKGKLSPNKPAARPENLSVNSLLPSREKSRAISYSNIQTRIGCSNIREIIENNPYRRLT 78
           P++ KLSP KPAA PENLSVNS+LPSREKSRAISYSNIQT IGCSNIRE IENNPYRRLT
Sbjct: 277 PKERKLSPTKPAAGPENLSVNSVLPSREKSRAISYSNIQTLIGCSNIREFIENNPYRRLT 336

Query: 79  VARSEGREA 88
           V RS GR+A
Sbjct: 337 VTRSGGRKA 345

BLAST of IVF0004712 vs. ExPASy TrEMBL
Match: A0A5A7ULW2 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G004710 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 7.0e-22
Identity = 58/69 (84.06%), Postives = 62/69 (89.86%), Query Frame = 0

Query: 19  PRKGKLSPNKPAARPENLSVNSLLPSREKSRAISYSNIQTRIGCSNIREIIENNPYRRLT 78
           P++ KLSP KPAA PENLSVNS+LPSREKSRAISYSNIQT IGCSNIRE IENNPYRRLT
Sbjct: 131 PKERKLSPTKPAAGPENLSVNSVLPSREKSRAISYSNIQTLIGCSNIREFIENNPYRRLT 190

Query: 79  VARSEGREA 88
           V RS GR+A
Sbjct: 191 VTRSGGRKA 199

BLAST of IVF0004712 vs. ExPASy TrEMBL
Match: A0A5A7UMJ9 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold741G00020 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 2.0e-21
Identity = 58/67 (86.57%), Postives = 59/67 (88.06%), Query Frame = 0

Query: 10  GPKRHPLTYPRKGKLSPNKPAARPENLSVNSLLPSREKSRAISYSNIQTRIGCSNIREII 69
           G KRHPLTYPRKGKL PNKP ARPEN SVNS+LPSREKSRAISYSNIQT IGCSNIRE I
Sbjct: 76  GQKRHPLTYPRKGKLPPNKPTARPENSSVNSVLPSREKSRAISYSNIQTLIGCSNIREFI 135

Query: 70  ENNPYRR 77
           E NP RR
Sbjct: 136 E-NPERR 141

BLAST of IVF0004712 vs. ExPASy TrEMBL
Match: A0A5A7SQ80 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold853G00300 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 2.3e-20
Identity = 55/69 (79.71%), Postives = 59/69 (85.51%), Query Frame = 0

Query: 19  PRKGKLSPNKPAARPENLSVNSLLPSREKSRAISYSNIQTRIGCSNIREIIENNPYRRLT 78
           P++ KLSP +PAA PENLSVNS LPSREKSR ISYSNIQT IGCSNIRE IENNPYRRL 
Sbjct: 146 PQERKLSPTRPAAEPENLSVNSALPSREKSRVISYSNIQTLIGCSNIREFIENNPYRRLA 205

Query: 79  VARSEGREA 88
           V RS GR+A
Sbjct: 206 VTRSGGRKA 214

BLAST of IVF0004712 vs. ExPASy TrEMBL
Match: A0A5A7UGC7 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold131G001680 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.2e-18
Identity = 52/69 (75.36%), Postives = 58/69 (84.06%), Query Frame = 0

Query: 19  PRKGKLSPNKPAARPENLSVNSLLPSREKSRAISYSNIQTRIGCSNIREIIENNPYRRLT 78
           P++ KLSP +P ARPEN SV S LPS+EKSRAI+YSNIQ  IGCSNIRE IENNPYRRLT
Sbjct: 110 PKERKLSPTRPTARPENPSVKSELPSKEKSRAITYSNIQALIGCSNIREFIENNPYRRLT 169

Query: 79  VARSEGREA 88
           V RS GR+A
Sbjct: 170 VTRSGGRKA 178

BLAST of IVF0004712 vs. NCBI nr
Match: KAA0054655.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 113 bits (282), Expect = 3.89e-29
Identity = 58/69 (84.06%), Postives = 62/69 (89.86%), Query Frame = 0

Query: 19  PRKGKLSPNKPAARPENLSVNSLLPSREKSRAISYSNIQTRIGCSNIREIIENNPYRRLT 78
           P++ KLSP KPAA PENLSVNS+LPSREKSRAISYSNIQT IGCSNIRE IENNPYRRLT
Sbjct: 131 PKERKLSPTKPAAGPENLSVNSVLPSREKSRAISYSNIQTLIGCSNIREFIENNPYRRLT 190

Query: 79  VARSEGREA 87
           V RS GR+A
Sbjct: 191 VTRSGGRKA 199

BLAST of IVF0004712 vs. NCBI nr
Match: KAA0043181.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 113 bits (282), Expect = 8.48e-28
Identity = 58/69 (84.06%), Postives = 62/69 (89.86%), Query Frame = 0

Query: 19  PRKGKLSPNKPAARPENLSVNSLLPSREKSRAISYSNIQTRIGCSNIREIIENNPYRRLT 78
           P++ KLSP KPAA PENLSVNS+LPSREKSRAISYSNIQT IGCSNIRE IENNPYRRLT
Sbjct: 277 PKERKLSPTKPAAGPENLSVNSVLPSREKSRAISYSNIQTLIGCSNIREFIENNPYRRLT 336

Query: 79  VARSEGREA 87
           V RS GR+A
Sbjct: 337 VTRSGGRKA 345

BLAST of IVF0004712 vs. NCBI nr
Match: KAA0057143.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 111 bits (278), Expect = 2.82e-27
Identity = 58/67 (86.57%), Postives = 59/67 (88.06%), Query Frame = 0

Query: 10  GPKRHPLTYPRKGKLSPNKPAARPENLSVNSLLPSREKSRAISYSNIQTRIGCSNIREII 69
           G KRHPLTYPRKGKL PNKP ARPEN SVNS+LPSREKSRAISYSNIQT IGCSNIRE I
Sbjct: 76  GQKRHPLTYPRKGKLPPNKPTARPENSSVNSVLPSREKSRAISYSNIQTLIGCSNIREFI 135

Query: 70  ENNPYRR 76
           EN P RR
Sbjct: 136 EN-PERR 141

BLAST of IVF0004712 vs. NCBI nr
Match: KAA0032698.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 108 bits (269), Expect = 5.13e-27
Identity = 55/69 (79.71%), Postives = 59/69 (85.51%), Query Frame = 0

Query: 19  PRKGKLSPNKPAARPENLSVNSLLPSREKSRAISYSNIQTRIGCSNIREIIENNPYRRLT 78
           P++ KLSP +PAA PENLSVNS LPSREKSR ISYSNIQT IGCSNIRE IENNPYRRL 
Sbjct: 146 PQERKLSPTRPAAEPENLSVNSALPSREKSRVISYSNIQTLIGCSNIREFIENNPYRRLA 205

Query: 79  VARSEGREA 87
           V RS GR+A
Sbjct: 206 VTRSGGRKA 214

BLAST of IVF0004712 vs. NCBI nr
Match: KAA0054224.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 102 bits (254), Expect = 3.80e-25
Identity = 52/69 (75.36%), Postives = 58/69 (84.06%), Query Frame = 0

Query: 19  PRKGKLSPNKPAARPENLSVNSLLPSREKSRAISYSNIQTRIGCSNIREIIENNPYRRLT 78
           P++ KLSP +P ARPEN SV S LPS+EKSRAI+YSNIQ  IGCSNIRE IENNPYRRLT
Sbjct: 110 PKERKLSPTRPTARPENPSVKSELPSKEKSRAITYSNIQALIGCSNIREFIENNPYRRLT 169

Query: 79  VARSEGREA 87
           V RS GR+A
Sbjct: 170 VTRSGGRKA 178

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TNL77.0e-2284.06NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
A0A5A7ULW27.0e-2284.06NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
A0A5A7UMJ92.0e-2186.57NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
A0A5A7SQ802.3e-2079.71NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
A0A5A7UGC71.2e-1875.36NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
Match NameE-valueIdentityDescription
KAA0054655.13.89e-2984.06NBS-LRR type resistance protein [Cucumis melo var. makuwa][more]
KAA0043181.18.48e-2884.06NBS-LRR type resistance protein [Cucumis melo var. makuwa][more]
KAA0057143.12.82e-2786.57NBS-LRR type resistance protein [Cucumis melo var. makuwa][more]
KAA0032698.15.13e-2779.71NBS-LRR type resistance protein [Cucumis melo var. makuwa][more]
KAA0054224.13.80e-2575.36NBS-LRR type resistance protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 14..39

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0004712.1IVF0004712.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane