IVF0004681 (gene) Melon (IVF77) v1

Overview


Name	IVF0004681
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrotransposon protein
Location	chr05: 21043135 .. 21043353 (-)
RNA-Seq Expression	IVF0004681
Synteny	IVF0004681

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGGGTTTGACATGCCGAATGGAAACGAGGAGTTTCGATCCATGTATAGCCAAGGGATTTACATGTCCTAGGATGATGTACGCACATCACGATCTGCTCGCACGTCAGACGGTAGGCCCGGATCGAGCTAATCCAAGAGAAAAAGGGGAAACCATCAGAATGGTGAGCTTGGCCCTAGAGTGTATGAATGACCAATTCAAAACGATTGTTGAGTAG

mRNA sequence

ATGAGGGGTTTGACATGCCGAATGGAAACGAGGAGTTTCGATCCATGTATAGCCAAGGGATTTACATGTCCTAGGATGATGTACGCACATCACGATCTGCTCGCACGTCAGACGGTAGGCCCGGATCGAGCTAATCCAAGAGAAAAAGGGGAAACCATCAGAATGGTGAGCTTGGCCCTAGAGTGTATGAATGACCAATTCAAAACGATTGTTGAGTAG

Coding sequence (CDS)

ATGAGGGGTTTGACATGCCGAATGGAAACGAGGAGTTTCGATCCATGTATAGCCAAGGGATTTACATGTCCTAGGATGATGTACGCACATCACGATCTGCTCGCACGTCAGACGGTAGGCCCGGATCGAGCTAATCCAAGAGAAAAAGGGGAAACCATCAGAATGGTGAGCTTGGCCCTAGAGTGTATGAATGACCAATTCAAAACGATTGTTGAGTAG

Protein sequence

MRGLTCRMETRSFDPCIAKGFTCPRMMYAHHDLLARQTVGPDRANPREKGETIRMVSLALECMNDQFKTIVE

Homology

[Close]

BLAST of IVF0004681 vs. ExPASy TrEMBL
Match: A0A5A7UPU1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold222G00890 PE=3 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.9e-25
Identity = 57/60 (95.00%), Postives = 57/60 (95.00%), Query Frame = 0


Query: 1   MRGLTCRMETRSFDPCIAKGFTCPRMMYAHHDLLARQTVGPDRANPREKGETIRMVSLAL 60
           MRGLTCRMETRSFDPCIAKGFTCPRMMYAHHDLLARQTVGPDRANPREKGETIRM  L L
Sbjct: 234 MRGLTCRMETRSFDPCIAKGFTCPRMMYAHHDLLARQTVGPDRANPREKGETIRMEFLRL 293

[Close]

BLAST of IVF0004681 vs. ExPASy TrEMBL
Match: A0A5A7VDL9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G005220 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 4.4e-14
Identity = 41/58 (70.69%), Postives = 44/58 (75.86%), Query Frame = 0


Query: 1   MRGLTCRMETRSFDPCIAKGFTCPRMMYAHHDLLARQTVGPDRANPREKGETIRMVSL 59
           MR LTCRM TRSF PC A+G TCPR MY HHDLLARQT+GPDR   RE+GE    VSL
Sbjct: 105 MRELTCRMGTRSFHPCTARGLTCPRRMYEHHDLLARQTIGPDR---RERGEASGRVSL 159

[Close]

BLAST of IVF0004681 vs. ExPASy TrEMBL
Match: A0A5D3C195 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2119G00840 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.4e-12
Identity = 36/51 (70.59%), Postives = 37/51 (72.55%), Query Frame = 0


Query: 1   MRGLTCRMETRSFDPCIAKGFTCPRMMYAHHDLLARQTVGPDRANPREKGE 52
           MR LTCRMETR+F PC A G TC R MYAHHD  A Q VGPDR NPR  GE
Sbjct: 160 MRSLTCRMETRTFRPCTASGLTCRRTMYAHHDFFALQRVGPDRVNPRGGGE 210

[Close]

BLAST of IVF0004681 vs. ExPASy TrEMBL
Match: A0A5A7VSX7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold238G001380 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 9.3e-12
Identity = 35/49 (71.43%), Postives = 39/49 (79.59%), Query Frame = 0


Query: 3   GLTCRMETRSFDPCIAKGFTCPRMMYAHHDLLARQTVGPDRANPREKGE 52
           GLTC M TRS  PC A+G TCPR MYAHHDLL RQ VGPD+A+ REKG+
Sbjct: 195 GLTCWMGTRSSYPCTARGLTCPRRMYAHHDLLTRQIVGPDQADRREKGK 243

[Close]

BLAST of IVF0004681 vs. ExPASy TrEMBL
Match: A0A5D3DCS9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold392G00550 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 9.3e-12
Identity = 35/49 (71.43%), Postives = 39/49 (79.59%), Query Frame = 0


Query: 3   GLTCRMETRSFDPCIAKGFTCPRMMYAHHDLLARQTVGPDRANPREKGE 52
           GLTC M TRS  PC A+G TCPR MYAHHDLL RQ VGPD+A+ REKG+
Sbjct: 195 GLTCWMGTRSSYPCTARGLTCPRRMYAHHDLLTRQIVGPDQADRREKGK 243

[Close]

BLAST of IVF0004681 vs. NCBI nr
Match: KAA0055605.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 122 bits (307), Expect = 6.57e-31
Identity = 57/60 (95.00%), Postives = 57/60 (95.00%), Query Frame = 0


Query: 1   MRGLTCRMETRSFDPCIAKGFTCPRMMYAHHDLLARQTVGPDRANPREKGETIRMVSLAL 60
           MRGLTCRMETRSFDPCIAKGFTCPRMMYAHHDLLARQTVGPDRANPREKGETIRM  L L
Sbjct: 234 MRGLTCRMETRSFDPCIAKGFTCPRMMYAHHDLLARQTVGPDRANPREKGETIRMEFLRL 293

[Close]

BLAST of IVF0004681 vs. NCBI nr
Match: KAA0066432.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 85.5 bits (210), Expect = 7.11e-19
Identity = 41/58 (70.69%), Postives = 44/58 (75.86%), Query Frame = 0


Query: 1   MRGLTCRMETRSFDPCIAKGFTCPRMMYAHHDLLARQTVGPDRANPREKGETIRMVSL 58
           MR LTCRM TRSF PC A+G TCPR MY HHDLLARQT+GPDR   RE+GE    VSL
Sbjct: 105 MRELTCRMGTRSFHPCTARGLTCPRRMYEHHDLLARQTIGPDR---RERGEASGRVSL 159

[Close]

BLAST of IVF0004681 vs. NCBI nr
Match: KAA0047431.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK04139.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 80.9 bits (198), Expect = 4.80e-16
Identity = 36/51 (70.59%), Postives = 37/51 (72.55%), Query Frame = 0


Query: 1   MRGLTCRMETRSFDPCIAKGFTCPRMMYAHHDLLARQTVGPDRANPREKGE 51
           MR LTCRMETR+F PC A G TC R MYAHHD  A Q VGPDR NPR  GE
Sbjct: 160 MRSLTCRMETRTFRPCTASGLTCRRTMYAHHDFFALQRVGPDRVNPRGGGE 210

[Close]

BLAST of IVF0004681 vs. NCBI nr
Match: TYK21089.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 78.2 bits (191), Expect = 4.25e-15
Identity = 35/49 (71.43%), Postives = 39/49 (79.59%), Query Frame = 0


Query: 3   GLTCRMETRSFDPCIAKGFTCPRMMYAHHDLLARQTVGPDRANPREKGE 51
           GLTC M TRS  PC A+G TCPR MYAHHDLL RQ VGPD+A+ REKG+
Sbjct: 195 GLTCWMGTRSSYPCTARGLTCPRRMYAHHDLLTRQIVGPDQADRREKGK 243

[Close]

BLAST of IVF0004681 vs. NCBI nr
Match: KAA0068169.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 78.2 bits (191), Expect = 4.25e-15
Identity = 35/49 (71.43%), Postives = 39/49 (79.59%), Query Frame = 0


Query: 3   GLTCRMETRSFDPCIAKGFTCPRMMYAHHDLLARQTVGPDRANPREKGE 51
           GLTC M TRS  PC A+G TCPR MYAHHDLL RQ VGPD+A+ REKG+
Sbjct: 195 GLTCWMGTRSSYPCTARGLTCPRRMYAHHDLLTRQIVGPDQADRREKGK 243

The following BLAST results are available for this feature:

BLAST of IVF0004681 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0004681 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UPU1	1.9e-25	95.00	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7VDL9	4.4e-14	70.69	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3C195	1.4e-12	70.59	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7VSX7	9.3e-12	71.43	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3DCS9	9.3e-12	71.43	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of IVF0004681 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0055605.1	6.57e-31	95.00	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0066432.1	7.11e-19	70.69	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0047431.1	4.80e-16	70.59	retrotransposon protein [Cucumis melo var. makuwa] >TYK04139.1 retrotransposon p...	[more]
TYK21089.1	4.25e-15	71.43	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0068169.1	4.25e-15	71.43	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0004681 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0004681.1	IVF0004681.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003676	nucleic acid binding