IVF0004533 (gene) Melon (IVF77) v1

Overview


Name	IVF0004533
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Wall-associated receptor kinase 2-like
Location	chr03: 8661849 .. 8662241 (-)
RNA-Seq Expression	IVF0004533
Synteny	IVF0004533

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATAAATTACCAAAATTCGGCGACGTTGGGTAAGCTTTTCAGGTGGGACTGTGGCAGCGCACACGGTTGTGAGGAATCAACGGATTCGACAATGAAGATTCGGCGGAGGGGTTCTTCGACAGAGGCGTTCTTTGACATTCTTTGACGTAGAGGTTATGGGCCGATGACGTTCTTTGAGTTCTTCGACGGAGGGGTCGTGGTTCTTCGAGTTCTTTGGCGTTATTTGGCAGAGGAGTCGTGGGTCGACGATGTTCTTCGGCGAAGGGGTTCTTCGGCAGAGAGGTTCTTTGCCGGAGGGGTTTTCGGCAGTGCAGCATGGGGCATGGATCTTTGCGAGAGAGATGGGAGTGAGGGGCGCACGAGGGAAAATTGGGGGTTTAGGTTTTTTTAA

mRNA sequence

ATGATAAATTACCAAAATTCGGCGACGTTGGGTAAGCTTTTCAGGTGGGACTGTGGCAGCGCACACGGTTGTGAGGAATCAACGGATTCGACAATGAAGATTCGGCGGAGGGGTTATGGGCCGATGACGTTCTTTGAGTTCTTCGACGGAGGGGTCGTGGTTCTTCGAGTTCTTTGGCGTTATTTGGCAGAGGAGTCGTGGGTCGACGATGTTCTTCGGCGAAGGGGTTCTTCGGCAGAGAGGTTCTTTGCCGGAGGGGTTTTCGGCAGTGCAGCATGGGGCATGGATCTTTGCGAGAGAGATGGGAGTGAGGGGCGCACGAGGGAAAATTGGGGGTTTAGGTTTTTTTAA

Coding sequence (CDS)

ATGATAAATTACCAAAATTCGGCGACGTTGGGTAAGCTTTTCAGGTGGGACTGTGGCAGCGCACACGGTTGTGAGGAATCAACGGATTCGACAATGAAGATTCGGCGGAGGGGTTATGGGCCGATGACGTTCTTTGAGTTCTTCGACGGAGGGGTCGTGGTTCTTCGAGTTCTTTGGCGTTATTTGGCAGAGGAGTCGTGGGTCGACGATGTTCTTCGGCGAAGGGGTTCTTCGGCAGAGAGGTTCTTTGCCGGAGGGGTTTTCGGCAGTGCAGCATGGGGCATGGATCTTTGCGAGAGAGATGGGAGTGAGGGGCGCACGAGGGAAAATTGGGGGTTTAGGTTTTTTTAA

Protein sequence

MINYQNSATLGKLFRWDCGSAHGCEESTDSTMKIRRRGYGPMTFFEFFDGGVVVLRVLWRYLAEESWVDDVLRRRGSSAERFFAGGVFGSAAWGMDLCERDGSEGRTRENWGFRFF

Homology

[Close]

BLAST of IVF0004533 vs. ExPASy TrEMBL
Match: A0A5D3DME3 (Wall-associated receptor kinase 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold184G00450 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 1.3e-36
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0


Query: 42  MTFFEFFDGGVVVLRVLWRYLAEESWVDDVLRRRGSSAERFFAGGVFGSAAWGMDLCERD 101
           MTFFEFFDGGVVVLRVLWRYLAEESWVDDVLRRRGSSAERFFAGGVFGSAAWGMDLCERD
Sbjct: 1   MTFFEFFDGGVVVLRVLWRYLAEESWVDDVLRRRGSSAERFFAGGVFGSAAWGMDLCERD 60

Query: 102 GSEGRTRENWGFRFF 117
           GSEGRTRENWGFRFF
Sbjct: 61  GSEGRTRENWGFRFF 75

[Close]

BLAST of IVF0004533 vs. ExPASy TrEMBL
Match: A0A5A7TBT0 (Wall-associated receptor kinase 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold64G003060 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 8.5e-15
Identity = 45/69 (65.22%), Postives = 50/69 (72.46%), Query Frame = 0


Query: 47  FFDGGVVVLRVLWRYLAEESWVDDVLRRRGSSAERFFAGGVF-------GSAAWGMDLCE 106
           FF  GVV+LR+L RY AEESWV++VLRRRGSS E FF GGVF        +   GMDLCE
Sbjct: 11  FFSAGVVILRILQRYSAEESWVENVLRRRGSSVEGFFVGGVFVGGVFDSSTQCGGMDLCE 70

Query: 107 RDGSEGRTR 109
           RDGSEGR R
Sbjct: 71  RDGSEGRVR 79

[Close]

BLAST of IVF0004533 vs. ExPASy TrEMBL
Match: A0A5A7TJ26 (Wall-associated receptor kinase 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1639G00310 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 6.3e-10
Identity = 44/79 (55.70%), Postives = 47/79 (59.49%), Query Frame = 0


Query: 24 CEESTDSTMKI--------------RRRGYGPMTFFEFFDGGVVVLRVLWRYLAEESWVD 83
          CEESTDST+KI              R RG G  TFF FFDG VVVL+VL R   EESWVD
Sbjct: 9  CEESTDSTVKIRWRGSLAQAFSDILRCRGRGSTTFFVFFDGWVVVLQVLRRSSVEESWVD 68

Query: 84 DVLRRRGSSAERFFAGGVF 89
          +VL  RGS    FFA G F
Sbjct: 69 NVLWWRGSLPMGFFARGFF 87

[Close]

BLAST of IVF0004533 vs. ExPASy TrEMBL
Match: A0A5D3DI48 (Wall-associated receptor kinase 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G003160 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 8.2e-10
Identity = 35/49 (71.43%), Postives = 39/49 (79.59%), Query Frame = 0


Query: 38 GYGPMTFFEFFDGGVVVLRVLWRYLAEESWVDDVLRRRGSSAERFFAGG 87
          G G   FFEFFDGGV+VLRVLWRY AEESWVD+VL+RRGS  E F + G
Sbjct: 2  GRGLTAFFEFFDGGVMVLRVLWRYSAEESWVDNVLQRRGSLPEGFSSEG 50

[Close]

BLAST of IVF0004533 vs. ExPASy TrEMBL
Match: A0A1S3BIX4 (wall-associated receptor kinase 2-like OS=Cucumis melo OX=3656 GN=LOC103490390 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 2.4e-09
Identity = 34/49 (69.39%), Postives = 39/49 (79.59%), Query Frame = 0


Query: 38 GYGPMTFFEFFDGGVVVLRVLWRYLAEESWVDDVLRRRGSSAERFFAGG 87
          G G   FFEFF+GGV+VLRVLWRY AEESWVD+VL+RRGS  E F + G
Sbjct: 2  GRGLTAFFEFFEGGVMVLRVLWRYSAEESWVDNVLQRRGSLPEGFSSEG 50

[Close]

BLAST of IVF0004533 vs. NCBI nr
Match: KAA0059843.1 (wall-associated receptor kinase 2-like [Cucumis melo var. makuwa] >TYK24797.1 wall-associated receptor kinase 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 159 bits (403), Expect = 1.35e-48
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0


Query: 42  MTFFEFFDGGVVVLRVLWRYLAEESWVDDVLRRRGSSAERFFAGGVFGSAAWGMDLCERD 101
           MTFFEFFDGGVVVLRVLWRYLAEESWVDDVLRRRGSSAERFFAGGVFGSAAWGMDLCERD
Sbjct: 1   MTFFEFFDGGVVVLRVLWRYLAEESWVDDVLRRRGSSAERFFAGGVFGSAAWGMDLCERD 60

Query: 102 GSEGRTRENWGFRFF 116
           GSEGRTRENWGFRFF
Sbjct: 61  GSEGRTRENWGFRFF 75

[Close]

BLAST of IVF0004533 vs. NCBI nr
Match: KAA0039486.1 (wall-associated receptor kinase 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 87.8 bits (216), Expect = 4.45e-20
Identity = 45/69 (65.22%), Postives = 50/69 (72.46%), Query Frame = 0


Query: 47  FFDGGVVVLRVLWRYLAEESWVDDVLRRRGSSAERFFAGGVFGSAAW-------GMDLCE 106
           FF  GVV+LR+L RY AEESWV++VLRRRGSS E FF GGVF    +       GMDLCE
Sbjct: 11  FFSAGVVILRILQRYSAEESWVENVLRRRGSSVEGFFVGGVFVGGVFDSSTQCGGMDLCE 70

Query: 107 RDGSEGRTR 108
           RDGSEGR R
Sbjct: 71  RDGSEGRVR 79

[Close]

BLAST of IVF0004533 vs. NCBI nr
Match: KAA0043423.1 (wall-associated receptor kinase 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 71.2 bits (173), Expect = 2.04e-13
Identity = 44/79 (55.70%), Postives = 47/79 (59.49%), Query Frame = 0


Query: 24 CEESTDSTMKIRRRGY--------------GPMTFFEFFDGGVVVLRVLWRYLAEESWVD 83
          CEESTDST+KIR RG               G  TFF FFDG VVVL+VL R   EESWVD
Sbjct: 9  CEESTDSTVKIRWRGSLAQAFSDILRCRGRGSTTFFVFFDGWVVVLQVLRRSSVEESWVD 68

Query: 84 DVLRRRGSSAERFFAGGVF 88
          +VL  RGS    FFA G F
Sbjct: 69 NVLWWRGSLPMGFFARGFF 87

[Close]

BLAST of IVF0004533 vs. NCBI nr
Match: KAA0035783.1 (wall-associated receptor kinase 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 68.2 bits (165), Expect = 4.24e-12
Identity = 39/68 (57.35%), Postives = 42/68 (61.76%), Query Frame = 0


Query: 38  GYGPMTFFEFFDGGVVVLRVLWRYLAEESWVDDVLRRRGSSAERFFAGGVFGSAAWGMDL 97
           G G M FFEFF GGVVVLRVL R+    SWVDDVLR RG SA+R           W +  
Sbjct: 38  GRGSMAFFEFFSGGVVVLRVL-RWRGRGSWVDDVLRWRGRSAQR-----------WVISC 93

Query: 98  CERDGSEG 105
           CERDGS G
Sbjct: 98  CERDGSVG 93

[Close]

BLAST of IVF0004533 vs. NCBI nr
Match: TYK23263.1 (wall-associated receptor kinase 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 72.0 bits (175), Expect = 6.58e-12
Identity = 35/49 (71.43%), Postives = 39/49 (79.59%), Query Frame = 0


Query: 38 GYGPMTFFEFFDGGVVVLRVLWRYLAEESWVDDVLRRRGSSAERFFAGG 86
          G G   FFEFFDGGV+VLRVLWRY AEESWVD+VL+RRGS  E F + G
Sbjct: 2  GRGLTAFFEFFDGGVMVLRVLWRYSAEESWVDNVLQRRGSLPEGFSSEG 50

The following BLAST results are available for this feature:

BLAST of IVF0004533 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0004533 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DME3	1.3e-36	100.00	Wall-associated receptor kinase 2-like OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A5A7TBT0	8.5e-15	65.22	Wall-associated receptor kinase 2-like OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A5A7TJ26	6.3e-10	55.70	Wall-associated receptor kinase 2-like OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A5D3DI48	8.2e-10	71.43	Wall-associated receptor kinase 2-like OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A1S3BIX4	2.4e-09	69.39	wall-associated receptor kinase 2-like OS=Cucumis melo OX=3656 GN=LOC103490390 P...	[more]

BLAST of IVF0004533 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0059843.1	1.35e-48	100.00	wall-associated receptor kinase 2-like [Cucumis melo var. makuwa] >TYK24797.1 wa...	[more]
KAA0039486.1	4.45e-20	65.22	wall-associated receptor kinase 2-like [Cucumis melo var. makuwa]	[more]
KAA0043423.1	2.04e-13	55.70	wall-associated receptor kinase 2-like [Cucumis melo var. makuwa]	[more]
KAA0035783.1	4.24e-12	57.35	wall-associated receptor kinase 2-like [Cucumis melo var. makuwa]	[more]
TYK23263.1	6.58e-12	71.43	wall-associated receptor kinase 2-like [Cucumis melo var. makuwa]	[more]

BLAST of IVF0004533 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0004533.2	IVF0004533.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006468	protein phosphorylation
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0005509	calcium ion binding
molecular_function	GO:0030247	polysaccharide binding
molecular_function	GO:0004674	protein serine/threonine kinase activity