IVF0004434 (gene) Melon (IVF77) v1

Overview
NameIVF0004434
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionPolyphenol oxidase
Locationchr12: 21407240 .. 21407864 (+)
RNA-Seq ExpressionIVF0004434
SyntenyIVF0004434
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGAAAATCTTCCTCACTCTCCGATCCATGCTTGGGGTGGCGATCCGAACCACAAAGGTCAGAACAAGGGAATCTTCTATACTCCGCCGCAAGAGACCCAATTTTCTACGCCCATCACGCCGACGTCGATCGCGTGTGGCCAATCTGGAAGTCCATGAACTGAAGGCGCAAAGACATTTCCGACCCCGATTTCCTCAACACTTCCTTCGTCTTCTACGATGAGAAAGCTGAACACGTCTGCGTCTATGTTCGTGACTCTCTCGACACCAAAAAAACTCGGCTACTTCTTCCAATCTGTCGACATCCCATGGCTCAAAGCTCCCCCCAAGCCTCACAACAAGTCCAAGAAGTCTATCGCTGCTAGCATTGTCCCGTTCGGTGTTGGTGCAGCCCTTGCTGAACCGAAGTCGATACAAGATAGGTGCTGGCATTTGATTGGACTACACTTGGGACATACCAACATAGGTGCATTCAACGGAGTGCTCGAGTATTTTCCTTTAGGTCATAGCCTTCCAAGATATTTACTGAATAACTAAAGCCATGACTCCTGTTCCTCCATGTTTTTTCATCAATCAAAATTTTCCATACTTACTCAATTACACATTCATTGTCTGATTCAAATAAAT

mRNA sequence

AGAAAATCTTCCTCACTCTCCGATCCATGCTTGGGGTGGCGATCCGAACCACAAAGGTCAGAACAAGGGAATCTTCTATACTCCGCCGCAAGAGACCCAATTTTCTACGCCCATCACGCCGACGTCGATCGCGTGTGGCCAATCTGGAAGTCCATGAACTGAAGGCGCAAAGACATTTCCGACCCCGATTTCCTCAACACTTCCTTCGTCTTCTACGATGAGAAAGCTGAACACGTCTGCGTCTATGTTCGTGACTCTCTCGACACCAAAAAAACTCGGCTACTTCTTCCAATCTGTCGACATCCCATGGCTCAAAGCTCCCCCCAAGCCTCACAACAAGTCCAAGAAGTCTATCGCTGCTAGCATTGTCCCGTTCGGTGTTGGTGCAGCCCTTGCTGAACCGAAGTCGATACAAGATAGGTGCTGGCATTTGATTGGACTACACTTGGGACATACCAACATAGGTGCATTCAACGGAGTGCTCGAGTATTTTCCTTTAGGTCATAGCCTTCCAAGATATTTACTGAATAACTAAAGCCATGACTCCTGTTCCTCCATGTTTTTTCATCAATCAAAATTTTCCATACTTACTCAATTACACATTCATTGTCTGATTCAAATAAAT

Coding sequence (CDS)

ATGAGAAAGCTGAACACGTCTGCGTCTATGTTCGTGACTCTCTCGACACCAAAAAAACTCGGCTACTTCTTCCAATCTGTCGACATCCCATGGCTCAAAGCTCCCCCCAAGCCTCACAACAAGTCCAAGAAGTCTATCGCTGCTAGCATTGTCCCGTTCGGTGTTGGTGCAGCCCTTGCTGAACCGAAGTCGATACAAGATAGGTGCTGGCATTTGATTGGACTACACTTGGGACATACCAACATAGGTGCATTCAACGGAGTGCTCGAGTATTTTCCTTTAGGTCATAGCCTTCCAAGATATTTACTGAATAACTAA

Protein sequence

MRKLNTSASMFVTLSTPKKLGYFFQSVDIPWLKAPPKPHNKSKKSIAASIVPFGVGAALAEPKSIQDRCWHLIGLHLGHTNIGAFNGVLEYFPLGHSLPRYLLNN
Homology
[Close]
BLAST of IVF0004434 vs. ExPASy TrEMBL
Match: A0A5D3CEU3 (Polyphenol oxidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold25005G00010 PE=4 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 7.6e-55
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0 

Query: 1   MRKLNTSASMFVTLSTPKKLGYFFQSVDIPWLKAPPKPHNKSKKSIAASIVPFGVGAALA 60
           MRKLNTSASMFVTLSTPKKLGYFFQSVDIPWLKAPPKPHNKSKKSIAASIVPFGVGAALA
Sbjct: 1   MRKLNTSASMFVTLSTPKKLGYFFQSVDIPWLKAPPKPHNKSKKSIAASIVPFGVGAALA 60

Query: 61  EPKSIQDRCWHLIGLHLGHTNIGAFNGVLEYFPLGHSLPRYLLNN 106
           EPKSIQDRCWHLIGLHLGHTNIGAFNGVLEYFPLGHSLPRYLLNN
Sbjct: 61  EPKSIQDRCWHLIGLHLGHTNIGAFNGVLEYFPLGHSLPRYLLNN 105

[Close]
BLAST of IVF0004434 vs. ExPASy TrEMBL
Match: A0A0A0LSA5 (PPO1_DWL domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G073610 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 2.0e-10
Identity = 42/55 (76.36%), Postives = 44/55 (80.00%), Query Frame = 0 

Query: 18  KKLGYFFQSVDIPWLKAPPKPHN---KSKKSIAASIVPFGVGAALAE-PKSIQDR 69
           KKLGY FQS+DIPWLK+ PKP N   KSKKSIAASIVPFGVGAAL E  KSI  R
Sbjct: 80  KKLGYVFQSIDIPWLKSRPKPLNKKVKSKKSIAASIVPFGVGAALDEKAKSIHLR 134

[Close]
BLAST of IVF0004434 vs. ExPASy TrEMBL
Match: A0A0U2D7M5 (Polyphenol oxidase OS=Luffa aegyptiaca OX=3670 PE=2 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.4e-05
Identity = 30/50 (60.00%), Postives = 32/50 (64.00%), Query Frame = 0 

Query: 18  KKLGYFFQSVDIPWLKAPPKPHNKSK---KSIAASIVPFGVGAALAEPKS 65
           K LGY +Q  DIPW+K  P   NK K   K   AS VPFGVGAALAEP S
Sbjct: 404 KNLGYVYQDADIPWIKTRPTKRNKPKKKPKKQVASTVPFGVGAALAEPIS 453

[Close]
BLAST of IVF0004434 vs. NCBI nr
Match: KAA0056966.1 (polyphenol oxidase [Cucumis melo var. makuwa] >TYK09748.1 polyphenol oxidase [Cucumis melo var. makuwa])

HSP 1 Score: 224 bits (571), Expect = 5.05e-74
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0 

Query: 1   MRKLNTSASMFVTLSTPKKLGYFFQSVDIPWLKAPPKPHNKSKKSIAASIVPFGVGAALA 60
           MRKLNTSASMFVTLSTPKKLGYFFQSVDIPWLKAPPKPHNKSKKSIAASIVPFGVGAALA
Sbjct: 1   MRKLNTSASMFVTLSTPKKLGYFFQSVDIPWLKAPPKPHNKSKKSIAASIVPFGVGAALA 60

Query: 61  EPKSIQDRCWHLIGLHLGHTNIGAFNGVLEYFPLGHSLPRYLLNN 105
           EPKSIQDRCWHLIGLHLGHTNIGAFNGVLEYFPLGHSLPRYLLNN
Sbjct: 61  EPKSIQDRCWHLIGLHLGHTNIGAFNGVLEYFPLGHSLPRYLLNN 105

[Close]
BLAST of IVF0004434 vs. NCBI nr
Match: XP_031739004.1 (polyphenol oxidase C, chloroplastic-like [Cucumis sativus] >KGN64653.1 hypothetical protein Csa_013139 [Cucumis sativus])

HSP 1 Score: 75.5 bits (184), Expect = 1.62e-14
Identity = 42/55 (76.36%), Postives = 44/55 (80.00%), Query Frame = 0 

Query: 18  KKLGYFFQSVDIPWLKAPPKPHNK---SKKSIAASIVPFGVGAALAEP-KSIQDR 68
           KKLGY FQS+DIPWLK+ PKP NK   SKKSIAASIVPFGVGAAL E  KSI  R
Sbjct: 80  KKLGYVFQSIDIPWLKSRPKPLNKKVKSKKSIAASIVPFGVGAALDEKAKSIHLR 134

[Close]
BLAST of IVF0004434 vs. NCBI nr
Match: AKN08990.1 (polyphenol oxidase [Luffa aegyptiaca])

HSP 1 Score: 58.5 bits (140), Expect = 2.75e-07
Identity = 31/51 (60.78%), Postives = 34/51 (66.67%), Query Frame = 0 

Query: 18  KKLGYFFQSVDIPWLKAPP----KPHNKSKKSIAASIVPFGVGAALAEPKS 64
           K LGY +Q  DIPW+K  P    KP  K KK +A S VPFGVGAALAEP S
Sbjct: 404 KNLGYVYQDADIPWIKTRPTKRNKPKKKPKKQVA-STVPFGVGAALAEPIS 453

[Close]
BLAST of IVF0004434 vs. NCBI nr
Match: TKY59315.1 (Polyphenol oxidase [Spatholobus suberectus])

HSP 1 Score: 55.8 bits (133), Expect = 2.34e-06
Identity = 27/55 (49.09%), Postives = 32/55 (58.18%), Query Frame = 0 

Query: 12  VTLSTPKKLGYFFQSVDIPWLKAPPKPHNKSKKSIAASIVPFGVGAALAEPKSIQ 66
           + L+   KLGY +Q VDIPWL   PKP  KSK    A    FG+GAA A   S+Q
Sbjct: 243 IALTQEIKLGYVYQDVDIPWLNNKPKPRRKSKGKKVALAQDFGIGAAQAAEASVQ 297

[Close]
BLAST of IVF0004434 vs. NCBI nr
Match: TKY59313.1 (Polyphenol oxidase [Spatholobus suberectus])

HSP 1 Score: 55.8 bits (133), Expect = 2.34e-06
Identity = 27/55 (49.09%), Postives = 32/55 (58.18%), Query Frame = 0 

Query: 12  VTLSTPKKLGYFFQSVDIPWLKAPPKPHNKSKKSIAASIVPFGVGAALAEPKSIQ 66
           + L+   KLGY +Q VDIPWL   PKP  KSK    A    FG+GAA A   S+Q
Sbjct: 243 IALTREIKLGYVYQDVDIPWLNNKPKPRRKSKGKKVALAQDFGIGAAQAAEASVQ 297

The following BLAST results are available for this feature:
BLAST of IVF0004434 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0004434 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CEU37.6e-55100.00Polyphenol oxidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold25005... [more]
A0A0A0LSA52.0e-1076.36PPO1_DWL domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G073610 PE... [more]
A0A0U2D7M51.4e-0560.00Polyphenol oxidase OS=Luffa aegyptiaca OX=3670 PE=2 SV=1[more]
BLAST of IVF0004434 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0056966.15.05e-74100.00polyphenol oxidase [Cucumis melo var. makuwa] >TYK09748.1 polyphenol oxidase [Cu... [more]
XP_031739004.11.62e-1476.36polyphenol oxidase C, chloroplastic-like [Cucumis sativus] >KGN64653.1 hypotheti... [more]
AKN08990.12.75e-0760.78polyphenol oxidase [Luffa aegyptiaca][more]
TKY59315.12.34e-0649.09Polyphenol oxidase [Spatholobus suberectus][more]
TKY59313.12.34e-0649.09Polyphenol oxidase [Spatholobus suberectus][more]
BLAST of IVF0004434 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0004434.2IVF0004434.2mRNA