IVF0004418 (gene) Melon (IVF77) v1

Overview
NameIVF0004418
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionProtein Ycf2-like
Locationchr06: 10517637 .. 10517954 (+)
RNA-Seq ExpressionIVF0004418
SyntenyIVF0004418
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTGGCTGAGGAAAGGGGCGGCTCAGGTATGGCTTATACGGACGCAGCTAAGGATAGCTCGACTGCCAGCAGACGTGCGATGCAGCCAGCAGCTCGGGTTCGCGATAATCTTCGACGCGGCTGGGTGAAGCTCCAACGATGGCACACACGGATCGATGGAGACAGCTAGCTACACTACTACATTCGACTTGACGAATCAACTTATGGTGGCTAACGAAACGCGAACAGCGGCTGGCTGGGCTTCGACGGCGACGCCCGAAACGGTAGACAAAGGTGGCTTGCAGACGACGGTGAGACTCACCTCGAATCTATAG

mRNA sequence

ATGGCTTGGCTGAGGAAAGGGGCGGCTCAGGTATGGCTTATACGGACGCAGCTAAGGATAGCTCGACTGCCAGCAGACGTGCGATGCAGCCAGCAGCTCGGCTCCAACGATGGCACACACGGATCGATGGAGACAGCTAGCTACACTACTACATTCGACTTGACGAATCAACTTATGGTGGCTAACGAAACGCGAACAGCGGCTGGCTGGGCTTCGACGGCGACGCCCGAAACGGTAGACAAAGGTGGCTTGCAGACGACGGTGAGACTCACCTCGAATCTATAG

Coding sequence (CDS)

ATGGCTTGGCTGAGGAAAGGGGCGGCTCAGGTATGGCTTATACGGACGCAGCTAAGGATAGCTCGACTGCCAGCAGACGTGCGATGCAGCCAGCAGCTCGGCTCCAACGATGGCACACACGGATCGATGGAGACAGCTAGCTACACTACTACATTCGACTTGACGAATCAACTTATGGTGGCTAACGAAACGCGAACAGCGGCTGGCTGGGCTTCGACGGCGACGCCCGAAACGGTAGACAAAGGTGGCTTGCAGACGACGGTGAGACTCACCTCGAATCTATAG

Protein sequence

MAWLRKGAAQVWLIRTQLRIARLPADVRCSQQLGSNDGTHGSMETASYTTTFDLTNQLMVANETRTAAGWASTATPETVDKGGLQTTVRLTSNL
Homology
[Close]
BLAST of IVF0004418 vs. ExPASy TrEMBL
Match: A0A5D3BTW6 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G00910 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 6.2e-08
Identity = 35/56 (62.50%), Postives = 41/56 (73.21%), Query Frame = 0 

Query: 39  THGSMETASYTTTFDLTNQLMVANETRTAAGWASTATPETVDKGGLQTTVRLTSNL 95
           T    +TA Y T FDLT QL VANETRTA GWAS AT +T D+GGLQ+T+ L S+L
Sbjct: 218 TRRPTKTAGYATMFDLTEQLEVANETRTAVGWASMATHKTTDEGGLQSTMTLASDL 273

[Close]
BLAST of IVF0004418 vs. ExPASy TrEMBL
Match: A0A5A7UK82 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold222G00310 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 4.0e-07
Identity = 34/51 (66.67%), Postives = 40/51 (78.43%), Query Frame = 0 

Query: 44  ETASYTTTFDLTNQLMVANETRTAAGWASTATPETVDKGGLQTTVRLTSNL 95
           +TA Y+ TF+LT QL VA+ET TAA WASTAT E VDKG LQT + LTS+L
Sbjct: 573 KTAGYSMTFNLTEQLAVADETLTAASWASTATHEIVDKGNLQTAMTLTSDL 623

[Close]
BLAST of IVF0004418 vs. NCBI nr
Match: KAA0056073.1 (protein Ycf2-like [Cucumis melo var. makuwa] >TYK01529.1 protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 65.9 bits (159), Expect = 3.39e-10
Identity = 35/56 (62.50%), Postives = 41/56 (73.21%), Query Frame = 0 

Query: 39  THGSMETASYTTTFDLTNQLMVANETRTAAGWASTATPETVDKGGLQTTVRLTSNL 94
           T    +TA Y T FDLT QL VANETRTA GWAS AT +T D+GGLQ+T+ L S+L
Sbjct: 218 TRRPTKTAGYATMFDLTEQLEVANETRTAVGWASMATHKTTDEGGLQSTMTLASDL 273

[Close]
BLAST of IVF0004418 vs. NCBI nr
Match: KAA0055554.1 (uncharacterized protein E6C27_scaffold222G00310 [Cucumis melo var. makuwa])

HSP 1 Score: 62.8 bits (151), Expect = 6.04e-09
Identity = 34/51 (66.67%), Postives = 40/51 (78.43%), Query Frame = 0 

Query: 44  ETASYTTTFDLTNQLMVANETRTAAGWASTATPETVDKGGLQTTVRLTSNL 94
           +TA Y+ TF+LT QL VA+ET TAA WASTAT E VDKG LQT + LTS+L
Sbjct: 573 KTAGYSMTFNLTEQLAVADETLTAASWASTATHEIVDKGNLQTAMTLTSDL 623

The following BLAST results are available for this feature:
BLAST of IVF0004418 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0004418 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3BTW66.2e-0862.50Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G00... [more]
A0A5A7UK824.0e-0766.67Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of IVF0004418 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0056073.13.39e-1062.50protein Ycf2-like [Cucumis melo var. makuwa] >TYK01529.1 protein Ycf2-like [Cucu... [more]
KAA0055554.16.04e-0966.67uncharacterized protein E6C27_scaffold222G00310 [Cucumis melo var. makuwa][more]
BLAST of IVF0004418 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0004418.1IVF0004418.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane