IVF0004400 (gene) Melon (IVF77) v1

Overview


Name	IVF0004400
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr05: 18289479 .. 18289798 (-)
RNA-Seq Expression	IVF0004400
Synteny	IVF0004400

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAACCCAAAAGCTTGCTACGATGTCATTTGTTGTTTTGGTGATATTCGCATGCATTGTATCAACAAGTATGCTCTTTAACTCATAAGTCCTCTAATTCTATAAAACTACTTTTGCTAGAACAATATTTTAAACAATGTTATTTTTGGTAATATGACAGCGAAAGGAGACGTTTTGAACGTGCATTGTGTCCGACCATGCTCTGATACTTATGACGATGAGTCATGTTATAATGATTGCATCCGAGAGAACCTTGGTGCTGGGTTTTGTTACCCAAAGCTACCTAGCACCGATAAAGATTGTTGTTGCAATGTTTGA

mRNA sequence

ATGGCAACCCAAAAGCTTGCTACGATGTCATTTGTTGTTTTGGTGATATTCGCATGCATTGTATCAACAACGAAAGGAGACGTTTTGAACGTGCATTGTGTCCGACCATGCTCTGATACTTATGACGATGAGTCATGTTATAATGATTGCATCCGAGAGAACCTTGGTGCTGGGTTTTGTTACCCAAAGCTACCTAGCACCGATAAAGATTGTTGTTGCAATGTTTGA

Coding sequence (CDS)

ATGGCAACCCAAAAGCTTGCTACGATGTCATTTGTTGTTTTGGTGATATTCGCATGCATTGTATCAACAACGAAAGGAGACGTTTTGAACGTGCATTGTGTCCGACCATGCTCTGATACTTATGACGATGAGTCATGTTATAATGATTGCATCCGAGAGAACCTTGGTGCTGGGTTTTGTTACCCAAAGCTACCTAGCACCGATAAAGATTGTTGTTGCAATGTTTGA

Protein sequence

MATQKLATMSFVVLVIFACIVSTTKGDVLNVHCVRPCSDTYDDESCYNDCIRENLGAGFCYPKLPSTDKDCCCNV

Homology

[Close]

BLAST of IVF0004400 vs. ExPASy TrEMBL
Match: A0A0A0LHG9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G071930 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 1.4e-34
Identity = 70/75 (93.33%), Postives = 73/75 (97.33%), Query Frame = 0


Query: 1  MATQKLATMSFVVLVIFACIVSTTKGDVLNVHCVRPCSDTYDDESCYNDCIRENLGAGFC 60
          MATQKLAT+S VVL+IFACI STTKGDVLNVHCVRPCSDTYDDESCYNDCI+ENLGAGFC
Sbjct: 1  MATQKLATISIVVLMIFACIASTTKGDVLNVHCVRPCSDTYDDESCYNDCIQENLGAGFC 60

Query: 61 YPKLPSTDKDCCCNV 76
          YPKLPSTDKDCCCNV
Sbjct: 61 YPKLPSTDKDCCCNV 75

[Close]

BLAST of IVF0004400 vs. ExPASy TrEMBL
Match: A0A0A0LJG5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G072430 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 5.3e-34
Identity = 70/74 (94.59%), Postives = 71/74 (95.95%), Query Frame = 0


Query: 1  MATQKLATMSFVVLVIFACIVSTTKGDVLNVHCVRPCSDTYDDESCYNDCIRENLGAGFC 60
          MATQKLAT+S VVLVIF CIVSTTKGDVLNVHCVRPC DTYDDESCYNDCIRENLGAGFC
Sbjct: 1  MATQKLATISIVVLVIFPCIVSTTKGDVLNVHCVRPCYDTYDDESCYNDCIRENLGAGFC 60

Query: 61 YPKLPSTDKDCCCN 75
          YPKLPSTDKDCCCN
Sbjct: 61 YPKLPSTDKDCCCN 74

[Close]

BLAST of IVF0004400 vs. ExPASy TrEMBL
Match: A0A0A0LKF5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G070930 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 2.0e-25
Identity = 51/53 (96.23%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 23 TTKGDVLNVHCVRPCSDTYDDESCYNDCIRENLGAGFCYPKLPSTDKDCCCNV 76
          T KGD+LNVHCVRPCSDTYDDESCYNDCIRENLGAGFCYPKLPSTDKDCCCNV
Sbjct: 2  TAKGDILNVHCVRPCSDTYDDESCYNDCIRENLGAGFCYPKLPSTDKDCCCNV 54

[Close]

BLAST of IVF0004400 vs. ExPASy TrEMBL
Match: A0A0A0L1R8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G339000 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.0e-08
Identity = 38/76 (50.00%), Postives = 47/76 (61.84%), Query Frame = 0


Query: 1  MATQKLATMSFVVLVIFACIVSTTKGDVLNVHCVRPCSDTYDDESCYNDCIRENLGAGFC 60
          M TQKL  +S +V V F+C  S+ +GD L  +CV PCS+   D  C   CI ++ GAGFC
Sbjct: 1  MVTQKLFIVSMLVAVTFSCFASSMEGDDL-WNCVIPCSNNNGDILCNTACIEQDEGAGFC 60

Query: 61 YPKLP--STDKDCCCN 75
           PKLP  S  K CCCN
Sbjct: 61 VPKLPGISDMKVCCCN 75

[Close]

BLAST of IVF0004400 vs. ExPASy TrEMBL
Match: A0A5A7TJH1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1167G00010 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.4e-07
Identity = 32/73 (43.84%), Postives = 44/73 (60.27%), Query Frame = 0


Query: 1  MATQKLATMSFVVLVIFACIVSTTKGDVLNVHCVRPCSDTYDDESCYNDCIRENLGAGFC 60
          M T+KL  +   + V+ AC V+ ++G  L  +C+RPCS+TY   SCY DC   N G G C
Sbjct: 1  MPTRKLLVVFVAITVLLACFVTLSEGQGL-WNCIRPCSETYKSLSCYVDCGALNKGTGAC 60

Query: 61 YPKLPSTDKDCCC 74
           PK P +D+  CC
Sbjct: 61 IPKRPVSDEYVCC 72

[Close]

BLAST of IVF0004400 vs. NCBI nr
Match: KGN61228.1 (hypothetical protein Csa_006463 [Cucumis sativus])

HSP 1 Score: 154 bits (390), Expect = 2.41e-47
Identity = 70/75 (93.33%), Postives = 73/75 (97.33%), Query Frame = 0


Query: 1  MATQKLATMSFVVLVIFACIVSTTKGDVLNVHCVRPCSDTYDDESCYNDCIRENLGAGFC 60
          MATQKLAT+S VVL+IFACI STTKGDVLNVHCVRPCSDTYDDESCYNDCI+ENLGAGFC
Sbjct: 1  MATQKLATISIVVLMIFACIASTTKGDVLNVHCVRPCSDTYDDESCYNDCIQENLGAGFC 60

Query: 61 YPKLPSTDKDCCCNV 75
          YPKLPSTDKDCCCNV
Sbjct: 61 YPKLPSTDKDCCCNV 75

[Close]

BLAST of IVF0004400 vs. NCBI nr
Match: KAE8651697.1 (hypothetical protein Csa_006343 [Cucumis sativus])

HSP 1 Score: 151 bits (382), Expect = 4.01e-46
Identity = 69/75 (92.00%), Postives = 73/75 (97.33%), Query Frame = 0


Query: 1  MATQKLATMSFVVLVIFACIVSTTKGDVLNVHCVRPCSDTYDDESCYNDCIRENLGAGFC 60
          MATQKLAT+S V+L+I ACIVSTTKGDVLNV+CVRPCSDTYDDESCYNDCIRENLGAGFC
Sbjct: 1  MATQKLATVSIVMLMILACIVSTTKGDVLNVNCVRPCSDTYDDESCYNDCIRENLGAGFC 60

Query: 61 YPKLPSTDKDCCCNV 75
          YPKLPSTDKDCCCNV
Sbjct: 61 YPKLPSTDKDCCCNV 75

[Close]

BLAST of IVF0004400 vs. NCBI nr
Match: KAE8651701.1 (hypothetical protein Csa_006400, partial [Cucumis sativus])

HSP 1 Score: 115 bits (287), Expect = 9.33e-32
Identity = 46/50 (92.00%), Postives = 50/50 (100.00%), Query Frame = 0


Query: 25 KGDVLNVHCVRPCSDTYDDESCYNDCIRENLGAGFCYPKLPSTDKDCCCN 74
          KGDVLN+HCV+PCSDTYDDESCYNDCI+ENLGAGFCYPKLPSTDKDCCC+
Sbjct: 15 KGDVLNMHCVQPCSDTYDDESCYNDCIKENLGAGFCYPKLPSTDKDCCCS 64

[Close]

BLAST of IVF0004400 vs. NCBI nr
Match: KAG6586428.1 (hypothetical protein SDJN03_19161, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 92.0 bits (227), Expect = 1.78e-22
Identity = 42/76 (55.26%), Postives = 58/76 (76.32%), Query Frame = 0


Query: 1  MATQKLATMSFVVLVIFACIVSTTKGDVLNVHCVRPCSDTYDDESCYNDCIRENLGAGFC 60
          MA++KL T+  +V+++F    S+ KGD+  + C+RPC D +DD+SCY+DC+R N GAGFC
Sbjct: 1  MASRKLFTVFAIVMMMFY-FASSAKGDMF-MECIRPCVDAFDDDSCYDDCVRANKGAGFC 60

Query: 61 YPKLPST--DKDCCCN 74
          YPKLPS   +KDCCCN
Sbjct: 61 YPKLPSVTNEKDCCCN 74

[Close]

BLAST of IVF0004400 vs. NCBI nr
Match: KGN54497.1 (hypothetical protein Csa_012842 [Cucumis sativus])

HSP 1 Score: 68.9 bits (167), Expect = 2.64e-13
Identity = 38/76 (50.00%), Postives = 47/76 (61.84%), Query Frame = 0


Query: 1  MATQKLATMSFVVLVIFACIVSTTKGDVLNVHCVRPCSDTYDDESCYNDCIRENLGAGFC 60
          M TQKL  +S +V V F+C  S+ +GD L  +CV PCS+   D  C   CI ++ GAGFC
Sbjct: 1  MVTQKLFIVSMLVAVTFSCFASSMEGDDL-WNCVIPCSNNNGDILCNTACIEQDEGAGFC 60

Query: 61 YPKLP--STDKDCCCN 74
           PKLP  S  K CCCN
Sbjct: 61 VPKLPGISDMKVCCCN 75

The following BLAST results are available for this feature:

BLAST of IVF0004400 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0004400 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LHG9	1.4e-34	93.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G071930 PE=4 SV=1	[more]
A0A0A0LJG5	5.3e-34	94.59	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G072430 PE=4 SV=1	[more]
A0A0A0LKF5	2.0e-25	96.23	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G070930 PE=4 SV=1	[more]
A0A0A0L1R8	1.0e-08	50.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G339000 PE=4 SV=1	[more]
A0A5A7TJH1	1.4e-07	43.84	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of IVF0004400 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN61228.1	2.41e-47	93.33	hypothetical protein Csa_006463 [Cucumis sativus]	[more]
KAE8651697.1	4.01e-46	92.00	hypothetical protein Csa_006343 [Cucumis sativus]	[more]
KAE8651701.1	9.33e-32	92.00	hypothetical protein Csa_006400, partial [Cucumis sativus]	[more]
KAG6586428.1	1.78e-22	55.26	hypothetical protein SDJN03_19161, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN54497.1	2.64e-13	50.00	hypothetical protein Csa_012842 [Cucumis sativus]	[more]

BLAST of IVF0004400 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PROSITE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..19 score: 5.0

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0004400.2	IVF0004400.2	mRNA