IVF0004364 (gene) Melon (IVF77) v1

Overview
NameIVF0004364
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGag-pol polyprotein
Locationchr03: 7067340 .. 7067579 (+)
RNA-Seq ExpressionIVF0004364
SyntenyIVF0004364
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTGCTTTTCTTACGTCAATGGATAGCAGATGTTGGAAATCAGCACTGACTAGATGGGAACCATCGTTCGTTAAAGATGTTGCTGGAAACACTACTCTATAGCCTGAGATCACCTAGACAAAGGAAGAAGATGAAGAATCACTTGGAAACTCGATGGCTCTAAATGCATTATTCAATAGTGTGGACCAGAATGTTTTCAAACTTATTAACACATGTACCTCGGCAAAAGAAGCCTAA

mRNA sequence

ATGATTGCTTTTCTTACGTCAATGGATAGCAGATGTTGGAAATCAGCACTGACTAGATGGGAACCATCGTTCGTTAAAGATACAAAGGAAGAAGATGAAGAATCACTTGGAAACTCGATGGCTCTAAATGCATTATTCAATAGTGTGGACCAGAATGTTTTCAAACTTATTAACACATGTACCTCGGCAAAAGAAGCCTAA

Coding sequence (CDS)

ATGATTGCTTTTCTTACGTCAATGGATAGCAGATGTTGGAAATCAGCACTGACTAGATGGGAACCATCGTTCGTTAAAGATACAAAGGAAGAAGATGAAGAATCACTTGGAAACTCGATGGCTCTAAATGCATTATTCAATAGTGTGGACCAGAATGTTTTCAAACTTATTAACACATGTACCTCGGCAAAAGAAGCCTAA

Protein sequence

MIAFLTSMDSRCWKSALTRWEPSFVKDTKEEDEESLGNSMALNALFNSVDQNVFKLINTCTSAKEA
Homology
BLAST of IVF0004364 vs. ExPASy TrEMBL
Match: A0A5A7VAY3 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17G001490 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 7.4e-16
Identity = 50/78 (64.10%), Postives = 52/78 (66.67%), Query Frame = 0

Query: 1  MIAFLTSMDSRCWKSALTRWEPSFVKD-------------TKEEDEESLGNSMALNALFN 60
          MIAFL S+D+ CWKS LT WE   VKD             TKEEDEE  GNS ALNALFN
Sbjct: 1  MIAFLNSVDNICWKSVLTGWESPSVKDVASKTTPKREITRTKEEDEELFGNSKALNALFN 60

Query: 61 SVDQNVFKLINTCTSAKE 66
           VD NVFKLIN CTSAKE
Sbjct: 61 GVDHNVFKLINACTSAKE 78

BLAST of IVF0004364 vs. ExPASy TrEMBL
Match: A0A5D3BG63 (Gag-proteinase polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold369G00170 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.1e-14
Identity = 48/78 (61.54%), Postives = 51/78 (65.38%), Query Frame = 0

Query: 1   MIAFLTSMDSRCWKSALTRWEPSFVKD-------------TKEEDEESLGNSMALNALFN 60
           MIAFL S+DSR WKS LT WEP  + D              KEEDEES GNS  LNAL N
Sbjct: 28  MIAFLKSVDSRSWKSVLTGWEPPSIIDATGIITLKPKIPWNKEEDEESFGNSKVLNALLN 87

Query: 61  SVDQNVFKLINTCTSAKE 66
            VDQNV KLINTCTSAK+
Sbjct: 88  GVDQNVLKLINTCTSAKK 105

BLAST of IVF0004364 vs. ExPASy TrEMBL
Match: A0A5D3CDY8 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold404G00030 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.8e-14
Identity = 49/79 (62.03%), Postives = 53/79 (67.09%), Query Frame = 0

Query: 1  MIAFLTSMDSRCWKSALTRWEPSFVKD-------------TKEEDEESLGNSMALNALFN 60
          M AFL SMDS+CWKS LT  E   +KD             TKE DEESLGN  ALNALFN
Sbjct: 1  MSAFLKSMDSKCWKSVLTGRELPSIKDAAGKTTLKPEITWTKEVDEESLGNLRALNALFN 60

Query: 61 SVDQNVFKLINTCTSAKEA 67
           ++ NVFKLINTCTSAKEA
Sbjct: 61 GINHNVFKLINTCTSAKEA 79

BLAST of IVF0004364 vs. ExPASy TrEMBL
Match: A0A5A7U4G8 (Gag-proteinase polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold163G001030 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 4.1e-14
Identity = 47/66 (71.21%), Postives = 49/66 (74.24%), Query Frame = 0

Query: 1   MIAFLTSMDSRCWKSALTRWEPSFVKDTKEEDEESLGNSMALNALFNSVDQNVFKLINTC 60
           MIAFL SMD+RCWKS            TKEEDEESL N+ ALNALFN VD NVFKLINTC
Sbjct: 69  MIAFLNSMDNRCWKS------------TKEEDEESLENTRALNALFNGVDWNVFKLINTC 122

Query: 61  TSAKEA 67
           TSAKEA
Sbjct: 129 TSAKEA 122

BLAST of IVF0004364 vs. ExPASy TrEMBL
Match: A0A5A7TXB8 (Gag-proteinase polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold114G001800 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 7.0e-14
Identity = 46/79 (58.23%), Postives = 53/79 (67.09%), Query Frame = 0

Query: 1   MIAFLTSMDSRCWKSALTRWEPSFVKD-------------TKEEDEESLGNSMALNALFN 60
           MI+F  S+DS+ WK  +TRWE    KD             +KEEDEESL NS ALNAL+N
Sbjct: 63  MISFQKSIDSKFWKVVITRWEHPSTKDVVGKVTLKPEISWSKEEDEESLRNSQALNALYN 122

Query: 61  SVDQNVFKLINTCTSAKEA 67
            VDQNVFKLINTCTS K+A
Sbjct: 123 GVDQNVFKLINTCTSVKKA 141

BLAST of IVF0004364 vs. NCBI nr
Match: KAA0065462.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 92.0 bits (227), Expect = 1.37e-22
Identity = 50/78 (64.10%), Postives = 52/78 (66.67%), Query Frame = 0

Query: 1  MIAFLTSMDSRCWKSALTRWEPSFVKD-------------TKEEDEESLGNSMALNALFN 60
          MIAFL S+D+ CWKS LT WE   VKD             TKEEDEE  GNS ALNALFN
Sbjct: 1  MIAFLNSVDNICWKSVLTGWESPSVKDVASKTTPKREITRTKEEDEELFGNSKALNALFN 60

Query: 61 SVDQNVFKLINTCTSAKE 65
           VD NVFKLIN CTSAKE
Sbjct: 61 GVDHNVFKLINACTSAKE 78

BLAST of IVF0004364 vs. NCBI nr
Match: KAA0038855.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK09428.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 87.4 bits (215), Expect = 2.82e-19
Identity = 49/79 (62.03%), Postives = 53/79 (67.09%), Query Frame = 0

Query: 1  MIAFLTSMDSRCWKSALTRWEPSFVKD-------------TKEEDEESLGNSMALNALFN 60
          M AFL SMDS+CWKS LT  E   +KD             TKE DEESLGN  ALNALFN
Sbjct: 1  MSAFLKSMDSKCWKSVLTGRELPSIKDAAGKTTLKPEITWTKEVDEESLGNLRALNALFN 60

Query: 61 SVDQNVFKLINTCTSAKEA 66
           ++ NVFKLINTCTSAKEA
Sbjct: 61 GINHNVFKLINTCTSAKEA 79

BLAST of IVF0004364 vs. NCBI nr
Match: TYJ98064.1 (gag-proteinase polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 88.2 bits (217), Expect = 8.30e-19
Identity = 48/78 (61.54%), Postives = 51/78 (65.38%), Query Frame = 0

Query: 1   MIAFLTSMDSRCWKSALTRWEPSFVKDT-------------KEEDEESLGNSMALNALFN 60
           MIAFL S+DSR WKS LT WEP  + D              KEEDEES GNS  LNAL N
Sbjct: 28  MIAFLKSVDSRSWKSVLTGWEPPSIIDATGIITLKPKIPWNKEEDEESFGNSKVLNALLN 87

Query: 61  SVDQNVFKLINTCTSAKE 65
            VDQNV KLINTCTSAK+
Sbjct: 88  GVDQNVLKLINTCTSAKK 105

BLAST of IVF0004364 vs. NCBI nr
Match: KAA0050148.1 (gag-proteinase polyprotein [Cucumis melo var. makuwa] >TYK06404.1 gag-proteinase polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 86.3 bits (212), Expect = 9.05e-19
Identity = 47/66 (71.21%), Postives = 49/66 (74.24%), Query Frame = 0

Query: 1   MIAFLTSMDSRCWKSALTRWEPSFVKDTKEEDEESLGNSMALNALFNSVDQNVFKLINTC 60
           MIAFL SMD+RCWKS            TKEEDEESL N+ ALNALFN VD NVFKLINTC
Sbjct: 69  MIAFLNSMDNRCWKS------------TKEEDEESLENTRALNALFNGVDWNVFKLINTC 122

Query: 61  TSAKEA 66
           TSAKEA
Sbjct: 129 TSAKEA 122

BLAST of IVF0004364 vs. NCBI nr
Match: KAA0046626.1 (gag-proteinase polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 85.5 bits (210), Expect = 5.42e-18
Identity = 46/79 (58.23%), Postives = 53/79 (67.09%), Query Frame = 0

Query: 1   MIAFLTSMDSRCWKSALTRWEPSFVKD-------------TKEEDEESLGNSMALNALFN 60
           MI+F  S+DS+ WK  +TRWE    KD             +KEEDEESL NS ALNAL+N
Sbjct: 63  MISFQKSIDSKFWKVVITRWEHPSTKDVVGKVTLKPEISWSKEEDEESLRNSQALNALYN 122

Query: 61  SVDQNVFKLINTCTSAKEA 66
            VDQNVFKLINTCTS K+A
Sbjct: 123 GVDQNVFKLINTCTSVKKA 141

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7VAY37.4e-1664.10Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17G0... [more]
A0A5D3BG631.1e-1461.54Gag-proteinase polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff... [more]
A0A5D3CDY81.8e-1462.03Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold404G... [more]
A0A5A7U4G84.1e-1471.21Gag-proteinase polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff... [more]
A0A5A7TXB87.0e-1458.23Gag-proteinase polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaff... [more]
Match NameE-valueIdentityDescription
KAA0065462.11.37e-2264.10gag-pol polyprotein [Cucumis melo var. makuwa][more]
KAA0038855.12.82e-1962.03gag-pol polyprotein [Cucumis melo var. makuwa] >TYK09428.1 gag-pol polyprotein [... [more]
TYJ98064.18.30e-1961.54gag-proteinase polyprotein [Cucumis melo var. makuwa][more]
KAA0050148.19.05e-1971.21gag-proteinase polyprotein [Cucumis melo var. makuwa] >TYK06404.1 gag-proteinase... [more]
KAA0046626.15.42e-1858.23gag-proteinase polyprotein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0004364.1IVF0004364.1mRNA