IVF0004358 (gene) Melon (IVF77) v1

Overview


Name	IVF0004358
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Reverse transcriptase
Location	chr03: 12201513 .. 12202679 (+)
RNA-Seq Expression	IVF0004358
Synteny	IVF0004358

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGGAAGCGTGAAAGAGAAGCTTCCAAGAATGTACGTACATTCAGTTCGTCGATGCATCAGAATTGATAAGGTAAAGAAAGAAGTGGAAGATTTGTGTCAGGGATGTCTAGAAGAGGAAATTTTAAGTCTAAGTATAGTGGTTCTTTTTTTCTCTAAATCAGGGTCAGGCGGAGGAGTCCAGAAATCGAGCAGTTCTAGTCATCCTATATCTTCTACAGGAGGTTCTCATGTTGCTCGATCAGATAGGGTTGTATCAGAATCTGGCAAGAGCAGTGTATGTTATAACTGCAATCAGGCAGGACATTATCGTAGAGACTGTCCATAGTTAATACCAGAAGGTAATACTGTCTGGAAAACCACTTCTCAGACAGTAAGCTAGTAGCCAAGAGAACCACAAGAATAAGTGGTGAAGGCTCTAGTGGGGGGAAAATAGAAAGGACCAGTAGGTCGCTCTCGTTAGGAAGAAAAGGTTTTGGCAATGACACAACAGGAGGTAGCAGATGCACCAAACGTTGTGACTAGTACGTTACCTATATTTGATAAATCTGCACGTCTTAATGGATCTTGGTGCAACACATTCTTTTCTCTCTATTATGTTTACAATTGGGGTTGATAAAGAGTTAGAAAGTCTGACTGAGGAATTGTTGATAAGTACACCTGTACGCGATAGTTTCATAGTTAGTGTGTATCGAAATTGTATTGTTCATATTGATGGTGAAACTTTAGAAGTATATTTAATTATGTTAAACATTTAGGAGTTTGATGTTATCTTGGGAATGGATTTTCTATCCAAACACTATGCATCCCTAAATTGTCATTAGAAAGATATTGTTTTTAAACGTCCATGGAAGATGAAATCTTTTTCCGCGGTGATAGAAAAATACTTTCCACTTGTGTGATCTCTGCTTTAAAGGCCAGTAAATTGTTTAGGAAGGGTTGTACAGCCTACCTAGCATATGTGATGGATACACAGGTTAGTAAGCTGATGCTTGAAGATATACCAGTGGTAAGAGAATTCCCAGATGTTTTTCCTGAAGAGTTATCGAGACTACCACCCGATAGAGAGATTAACTTCTCAATTGATTTAGTGCCTGGAACGGCACCCATTTCACAAGCTCTCTATAAAATGACACAAATGGAACTGAGAGAGTTAAACTCGTAG

mRNA sequence

ATGAAAGGAAGCGTGAAAGAGAAGCTTCCAAGAATGTACGTACATTCAGTTCGTCGATGCATCAGAATTGATAAGGTAAAGAAAGAAGTGGAAGATTTGTGTCAGGGATGTCTAGAAGAGGAAATTTTAAGTCTAAGTATAGTGGTTCTTTTTTTCTCTAAATCAGGGTCAGGCGGAGGAGTCCAGAAATCGAGCAGTTCTAGTCATCCTATATCTTCTACAGGAGGTTCTCATGTTGCTCGATCAGATAGGGTTGTATCAGAATCTGGCAAGAGCAGTGTATGTTATAACTGCAATCAGGCAGGACATTATCGTAATACTGTCTGGAAAACCACTTCTCAGACAGAAGAAAAGGTTTTGGCAATGACACAACAGGAGGTAGCAGATGCACCAAACGTTGTGACTAAGTTAGAAAGTCTGACTGAGGAATTGTTGATAAGTACACCTGTACGCGATAGTTTCATAGTTAGTGTGTATCGAAATTGTATTGTTCATATTGATGGTGAAACTTTAGAATTTGATGTTATCTTGGGAATGGATTTTCTATCCAAACACTATGCATCCCTAAATTATGAAATCTTTTTCCGCGGTGATAGAAAAATACTTTCCACTTGTGTGATCTCTGCTTTAAAGGCCAGTAAATTGTTTAGGAAGGGTTGTACAGCCTACCTAGCATATGTGATGGATACACAGGTTAGTAAGCTGATGCTTGAAGATATACCAGTGGTAAGAGAATTCCCAGATGTTTTTCCTGAAGAGTTATCGAGACTACCACCCGATAGAGAGATTAACTTCTCAATTGATTTAGTGCCTGGAACGGCACCCATTTCACAAGCTCTCTATAAAATGACACAAATGGAACTGAGAGAGTTAAACTCGTAG

Coding sequence (CDS)

ATGAAAGGAAGCGTGAAAGAGAAGCTTCCAAGAATGTACGTACATTCAGTTCGTCGATGCATCAGAATTGATAAGGTAAAGAAAGAAGTGGAAGATTTGTGTCAGGGATGTCTAGAAGAGGAAATTTTAAGTCTAAGTATAGTGGTTCTTTTTTTCTCTAAATCAGGGTCAGGCGGAGGAGTCCAGAAATCGAGCAGTTCTAGTCATCCTATATCTTCTACAGGAGGTTCTCATGTTGCTCGATCAGATAGGGTTGTATCAGAATCTGGCAAGAGCAGTGTATGTTATAACTGCAATCAGGCAGGACATTATCGTAATACTGTCTGGAAAACCACTTCTCAGACAGAAGAAAAGGTTTTGGCAATGACACAACAGGAGGTAGCAGATGCACCAAACGTTGTGACTAAGTTAGAAAGTCTGACTGAGGAATTGTTGATAAGTACACCTGTACGCGATAGTTTCATAGTTAGTGTGTATCGAAATTGTATTGTTCATATTGATGGTGAAACTTTAGAATTTGATGTTATCTTGGGAATGGATTTTCTATCCAAACACTATGCATCCCTAAATTATGAAATCTTTTTCCGCGGTGATAGAAAAATACTTTCCACTTGTGTGATCTCTGCTTTAAAGGCCAGTAAATTGTTTAGGAAGGGTTGTACAGCCTACCTAGCATATGTGATGGATACACAGGTTAGTAAGCTGATGCTTGAAGATATACCAGTGGTAAGAGAATTCCCAGATGTTTTTCCTGAAGAGTTATCGAGACTACCACCCGATAGAGAGATTAACTTCTCAATTGATTTAGTGCCTGGAACGGCACCCATTTCACAAGCTCTCTATAAAATGACACAAATGGAACTGAGAGAGTTAAACTCGTAG

Protein sequence

MKGSVKEKLPRMYVHSVRRCIRIDKVKKEVEDLCQGCLEEEILSLSIVVLFFSKSGSGGGVQKSSSSSHPISSTGGSHVARSDRVVSESGKSSVCYNCNQAGHYRNTVWKTTSQTEEKVLAMTQQEVADAPNVVTKLESLTEELLISTPVRDSFIVSVYRNCIVHIDGETLEFDVILGMDFLSKHYASLNYEIFFRGDRKILSTCVISALKASKLFRKGCTAYLAYVMDTQVSKLMLEDIPVVREFPDVFPEELSRLPPDREINFSIDLVPGTAPISQALYKMTQMELRELNS

Homology

[Close]

BLAST of IVF0004358 vs. ExPASy TrEMBL
Match: A0A5A7UZM6 (Gag protease polyprotein-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00750 PE=4 SV=1)

HSP 1 Score: 336.3 bits (861), Expect = 1.3e-88
Identity = 203/310 (65.48%), Postives = 211/310 (68.06%), Query Frame = 0


Query: 52  FSKSGSGGGVQKSSSSSHPISSTGGSHVARSDRVVSESGKSSVCYNCNQAGHYR------ 111
           FSKSGS GG Q+SS SSHPISSTGGSH+ARSDRVVSES KSSVCYNC Q GHYR      
Sbjct: 279 FSKSGSSGGAQRSSGSSHPISSTGGSHIARSDRVVSESSKSSVCYNCGQPGHYRRDCPHL 338

Query: 112 ----NTVWKTTSQT-----------------------------EEKVLAMTQQEVADAPN 171
               NT+ KTTSQT                             E KV AMTQQE ADAPN
Sbjct: 339 IPGGNTILKTTSQTVSQQPRITITSGEGSSGGKQKGPVGRSRQEGKVFAMTQQEAADAPN 398

Query: 172 VVT-----KLESLTEELLISTPVRDSFIV-SVYRNCIVHIDGETL----------EFDVI 231
           VVT     +LESLTEELLIST + DSFIV SVYR C + IDGETL          EFDVI
Sbjct: 399 VVTVGIDKELESLTEELLISTRIGDSFIVNSVYRKCSILIDGETLEVDLNPLNIQEFDVI 458

Query: 232 LGMDFLSKHYASLN-------------YEIFFRGDRKILSTCVISALKASKLFRKGCTAY 291
           LGMDFLS HYASLN              EI FRGDRKIL TCVISALKASKL RKGCT Y
Sbjct: 459 LGMDFLSNHYASLNCHQKEIVFKRPGMSEILFRGDRKILLTCVISALKASKLLRKGCTVY 518

Query: 292 LAYVMDTQVSKLMLEDIPVVREFPDVFPEELSRLPPDREINFSIDLVPGTAPISQALYKM 294
           L  V+DTQVSKL LEDIPVVREFPDVFPEELS LPPDREI FSIDLVPGT PISQA Y+M
Sbjct: 519 LVNVIDTQVSKLKLEDIPVVREFPDVFPEELSELPPDREIEFSIDLVPGTTPISQAPYRM 578

[Close]

BLAST of IVF0004358 vs. ExPASy TrEMBL
Match: A0A5D3DS52 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold14G00670 PE=4 SV=1)

HSP 1 Score: 313.9 bits (803), Expect = 7.0e-82
Identity = 195/310 (62.90%), Postives = 206/310 (66.45%), Query Frame = 0


Query: 52  FSKSGSGGGVQKSSSSSHPISSTGGSHVARSDRVVSESGKSSVCYNCNQAGHYR------ 111
           FSKSG GG  Q+SS S+HPISST GSH+ARSDRV+S+SGKSSVCYNC Q GHYR      
Sbjct: 268 FSKSGLGGRAQRSSGSNHPISSTAGSHIARSDRVLSKSGKSSVCYNCGQLGHYRRDCPHL 327

Query: 112 ----NTVWKTTSQT-----------------------------EEKVLAMTQQEVADAPN 171
               NT+ KTTSQT                             E KV AMTQQE ADAPN
Sbjct: 328 IPGGNTILKTTSQTVSQQLRTTRTSGEGSSGEKQNGLVGRSRQEGKVCAMTQQEAADAPN 387

Query: 172 VVT-----KLESLTEELLISTPVRDSFIV-SVYRNCIVHIDGETL----------EFDVI 231
           VVT     +LESLTEELLIST V DSFIV SVYR C + ID ETL          EFDVI
Sbjct: 388 VVTIGVDKELESLTEELLISTLVGDSFIVNSVYRKCSILIDDETLEVDLIPLNIQEFDVI 447

Query: 232 LGMDFLSKHYASLN-------------YEIFFRGDRKILSTCVISALKASKLFRKGCTAY 291
           LGMDFLS HYASLN              EI F GDRKIL T VIS LKASKL RKGCTAY
Sbjct: 448 LGMDFLSNHYASLNCHRKEIVFKRPRKSEIIFHGDRKILPTYVISTLKASKLLRKGCTAY 507

Query: 292 LAYVMDTQVSKLMLEDIPVVREFPDVFPEELSRLPPDREINFSIDLVPGTAPISQALYKM 294
           LA VMDTQ+SKL LEDIPVVREFPDVFPEELS + PDREI FSIDLV G APISQA Y+M
Sbjct: 508 LANVMDTQISKLKLEDIPVVREFPDVFPEELSGVSPDREIEFSIDLVLGMAPISQARYRM 567

[Close]

BLAST of IVF0004358 vs. ExPASy TrEMBL
Match: A0A5A7SJ99 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold305G00100 PE=4 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 1.2e-68
Identity = 164/262 (62.60%), Postives = 177/262 (67.56%), Query Frame = 0


Query: 52  FSKSGSGGGVQKSSSSSHPISSTGGSHVARSDRVVSESGKSSVCYNCNQAGHYRNTVWKT 111
           FSKS SGGG Q+ S SSHPISSTGGSH+ARSDRVV ESGKSSVCYNC Q  HYR      
Sbjct: 264 FSKSRSGGGAQRWSGSSHPISSTGGSHIARSDRVVLESGKSSVCYNCGQLEHYRRDCPHL 323

Query: 112 -------TSQTEEKVLAMTQQEVADAPNVVTKLESLTEELLISTPVRDSFIVSVYRNCIV 171
                   S+ E KV AMTQQE ADAPNVVT+++      LIS  ++             
Sbjct: 324 IPGGPLGRSRQEGKVFAMTQQEAADAPNVVTEVD------LISLNIQ------------- 383

Query: 172 HIDGETLEFDVILGMDFLSKHYASLN-------------YEIFFRGDRKILSTCVISALK 231
                  +FDVILGMDFLS HYASLN              EI FRGDRKIL T VI ALK
Sbjct: 384 -------KFDVILGMDFLSNHYASLNCHQKEIVFKRPGKSEIIFRGDRKILPTYVIFALK 443

Query: 232 ASKLFRKGCTAYLAYVMDTQVSKLMLEDIPVVREFPDVFPEELSRLPPDREINFSIDLVP 291
           ASKL RKGCTAYLA+VMDTQ+SKL LEDI VVREFPDVFPEELS LPPDREI FSIDL  
Sbjct: 444 ASKLLRKGCTAYLAHVMDTQISKLKLEDISVVREFPDVFPEELSGLPPDREIEFSIDLGF 499

Query: 292 GTAPISQALYKMTQMELRELNS 294
           G APISQA Y+M  MEL+EL S
Sbjct: 504 GMAPISQAPYRMASMELKELKS 499

[Close]

BLAST of IVF0004358 vs. ExPASy TrEMBL
Match: A0A5A7TL70 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold246G00030 PE=4 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 3.3e-63
Identity = 167/293 (57.00%), Postives = 176/293 (60.07%), Query Frame = 0


Query: 54  KSGSGGGVQKSSSSSHPISSTGGSHVARSDRVVSESGKSSVCYNCNQAGHYR-------- 113
           ++  G G Q+SS SSHPISSTGGSH+ARSDRVVSESGKSSVCYNC+Q GHYR        
Sbjct: 248 RNRQGRGAQRSSGSSHPISSTGGSHIARSDRVVSESGKSSVCYNCDQPGHYRRDCPHLIP 307

Query: 114 --NTVWKTTSQT-----------------------------EEKVLAMTQQEVADAPNVV 173
             NT+ KTTS T                             E KV AMTQQE ADAPNVV
Sbjct: 308 GGNTILKTTSHTVSQQPRTTRTSGEGSSGGKQKGPVGRSRPEGKVFAMTQQEAADAPNVV 367

Query: 174 TKLESLTEELLISTPVRDSFIV-SVYRNCIVHIDGETL----------EFDVILGMDFLS 233
                          + DSFIV SVYR C V IDGETL          EFDVILGMDFLS
Sbjct: 368 ---------------IGDSFIVNSVYRKCSVLIDGETLEVDLISLNIQEFDVILGMDFLS 427

Query: 234 KHYASLN---YEIFFRGDRKILSTCVISALKASKLFRKGCTAYLAYVMDTQVSKLMLEDI 293
            HYASLN    EI F                  K   KGCTAYLA V+DTQVSKL LEDI
Sbjct: 428 NHYASLNCHQKEIVF------------------KRPGKGCTAYLANVIDTQVSKLKLEDI 487

[Close]

BLAST of IVF0004358 vs. ExPASy TrEMBL
Match: A0A5D3DI38 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold334G00610 PE=4 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 3.3e-63
Identity = 167/293 (57.00%), Postives = 176/293 (60.07%), Query Frame = 0


Query: 54  KSGSGGGVQKSSSSSHPISSTGGSHVARSDRVVSESGKSSVCYNCNQAGHYR-------- 113
           ++  G G Q+SS SSHPISSTGGSH+ARSDRVVSESGKSSVCYNC+Q GHYR        
Sbjct: 248 RNRQGRGAQRSSGSSHPISSTGGSHIARSDRVVSESGKSSVCYNCDQPGHYRRDCPHLIP 307

Query: 114 --NTVWKTTSQT-----------------------------EEKVLAMTQQEVADAPNVV 173
             NT+ KTTS T                             E KV AMTQQE ADAPNVV
Sbjct: 308 GGNTILKTTSHTVSQQPRTTRTSGEGSSGGKQKGPVGRSRPEGKVFAMTQQEAADAPNVV 367

Query: 174 TKLESLTEELLISTPVRDSFIV-SVYRNCIVHIDGETL----------EFDVILGMDFLS 233
                          + DSFIV SVYR C V IDGETL          EFDVILGMDFLS
Sbjct: 368 ---------------IGDSFIVNSVYRKCSVLIDGETLEVDLISLNIQEFDVILGMDFLS 427

Query: 234 KHYASLN---YEIFFRGDRKILSTCVISALKASKLFRKGCTAYLAYVMDTQVSKLMLEDI 293
            HYASLN    EI F                  K   KGCTAYLA V+DTQVSKL LEDI
Sbjct: 428 NHYASLNCHQKEIVF------------------KRPGKGCTAYLANVIDTQVSKLKLEDI 487

[Close]

BLAST of IVF0004358 vs. NCBI nr
Match: KAA0060484.1 (Gag protease polyprotein-like protein [Cucumis melo var. makuwa] >TYK18569.1 Gag protease polyprotein-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 337 bits (863), Expect = 2.29e-108
Identity = 203/310 (65.48%), Postives = 211/310 (68.06%), Query Frame = 0


Query: 52  FSKSGSGGGVQKSSSSSHPISSTGGSHVARSDRVVSESGKSSVCYNCNQAGHYR------ 111
           FSKSGS GG Q+SS SSHPISSTGGSH+ARSDRVVSES KSSVCYNC Q GHYR      
Sbjct: 279 FSKSGSSGGAQRSSGSSHPISSTGGSHIARSDRVVSESSKSSVCYNCGQPGHYRRDCPHL 338

Query: 112 ----NTVWKTTSQT-----------------------------EEKVLAMTQQEVADAPN 171
               NT+ KTTSQT                             E KV AMTQQE ADAPN
Sbjct: 339 IPGGNTILKTTSQTVSQQPRITITSGEGSSGGKQKGPVGRSRQEGKVFAMTQQEAADAPN 398

Query: 172 VVT-----KLESLTEELLISTPVRDSFIV-SVYRNCIVHIDGETLE----------FDVI 231
           VVT     +LESLTEELLIST + DSFIV SVYR C + IDGETLE          FDVI
Sbjct: 399 VVTVGIDKELESLTEELLISTRIGDSFIVNSVYRKCSILIDGETLEVDLNPLNIQEFDVI 458

Query: 232 LGMDFLSKHYASLNY-------------EIFFRGDRKILSTCVISALKASKLFRKGCTAY 291
           LGMDFLS HYASLN              EI FRGDRKIL TCVISALKASKL RKGCT Y
Sbjct: 459 LGMDFLSNHYASLNCHQKEIVFKRPGMSEILFRGDRKILLTCVISALKASKLLRKGCTVY 518

Query: 292 LAYVMDTQVSKLMLEDIPVVREFPDVFPEELSRLPPDREINFSIDLVPGTAPISQALYKM 293
           L  V+DTQVSKL LEDIPVVREFPDVFPEELS LPPDREI FSIDLVPGT PISQA Y+M
Sbjct: 519 LVNVIDTQVSKLKLEDIPVVREFPDVFPEELSELPPDREIEFSIDLVPGTTPISQAPYRM 578

[Close]

BLAST of IVF0004358 vs. NCBI nr
Match: KAA0067055.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYK26292.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 314 bits (805), Expect = 9.96e-100
Identity = 195/310 (62.90%), Postives = 206/310 (66.45%), Query Frame = 0


Query: 52  FSKSGSGGGVQKSSSSSHPISSTGGSHVARSDRVVSESGKSSVCYNCNQAGHYR------ 111
           FSKSG GG  Q+SS S+HPISST GSH+ARSDRV+S+SGKSSVCYNC Q GHYR      
Sbjct: 268 FSKSGLGGRAQRSSGSNHPISSTAGSHIARSDRVLSKSGKSSVCYNCGQLGHYRRDCPHL 327

Query: 112 ----NTVWKTTSQT-----------------------------EEKVLAMTQQEVADAPN 171
               NT+ KTTSQT                             E KV AMTQQE ADAPN
Sbjct: 328 IPGGNTILKTTSQTVSQQLRTTRTSGEGSSGEKQNGLVGRSRQEGKVCAMTQQEAADAPN 387

Query: 172 VVT-----KLESLTEELLISTPVRDSFIV-SVYRNCIVHIDGETLE----------FDVI 231
           VVT     +LESLTEELLIST V DSFIV SVYR C + ID ETLE          FDVI
Sbjct: 388 VVTIGVDKELESLTEELLISTLVGDSFIVNSVYRKCSILIDDETLEVDLIPLNIQEFDVI 447

Query: 232 LGMDFLSKHYASLNY-------------EIFFRGDRKILSTCVISALKASKLFRKGCTAY 291
           LGMDFLS HYASLN              EI F GDRKIL T VIS LKASKL RKGCTAY
Sbjct: 448 LGMDFLSNHYASLNCHRKEIVFKRPRKSEIIFHGDRKILPTYVISTLKASKLLRKGCTAY 507

Query: 292 LAYVMDTQVSKLMLEDIPVVREFPDVFPEELSRLPPDREINFSIDLVPGTAPISQALYKM 293
           LA VMDTQ+SKL LEDIPVVREFPDVFPEELS + PDREI FSIDLV G APISQA Y+M
Sbjct: 508 LANVMDTQISKLKLEDIPVVREFPDVFPEELSGVSPDREIEFSIDLVLGMAPISQARYRM 567

[Close]

BLAST of IVF0004358 vs. NCBI nr
Match: KAA0026280.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK21476.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 271 bits (694), Expect = 2.45e-82
Identity = 164/262 (62.60%), Postives = 177/262 (67.56%), Query Frame = 0


Query: 52  FSKSGSGGGVQKSSSSSHPISSTGGSHVARSDRVVSESGKSSVCYNCNQAGHYRNTVWKT 111
           FSKS SGGG Q+ S SSHPISSTGGSH+ARSDRVV ESGKSSVCYNC Q  HYR      
Sbjct: 264 FSKSRSGGGAQRWSGSSHPISSTGGSHIARSDRVVLESGKSSVCYNCGQLEHYRRDCPHL 323

Query: 112 T-------SQTEEKVLAMTQQEVADAPNVVTKLESLTEELLISTPVRDSFIVSVYRNCIV 171
                   S+ E KV AMTQQE ADAPNVVT+++      LIS  ++             
Sbjct: 324 IPGGPLGRSRQEGKVFAMTQQEAADAPNVVTEVD------LISLNIQ------------- 383

Query: 172 HIDGETLEFDVILGMDFLSKHYASLNY-------------EIFFRGDRKILSTCVISALK 231
                  +FDVILGMDFLS HYASLN              EI FRGDRKIL T VI ALK
Sbjct: 384 -------KFDVILGMDFLSNHYASLNCHQKEIVFKRPGKSEIIFRGDRKILPTYVIFALK 443

Query: 232 ASKLFRKGCTAYLAYVMDTQVSKLMLEDIPVVREFPDVFPEELSRLPPDREINFSIDLVP 291
           ASKL RKGCTAYLA+VMDTQ+SKL LEDI VVREFPDVFPEELS LPPDREI FSIDL  
Sbjct: 444 ASKLLRKGCTAYLAHVMDTQISKLKLEDISVVREFPDVFPEELSGLPPDREIEFSIDLGF 499

Query: 292 GTAPISQALYKMTQMELRELNS 293
           G APISQA Y+M  MEL+EL S
Sbjct: 504 GMAPISQAPYRMASMELKELKS 499

[Close]

BLAST of IVF0004358 vs. NCBI nr
Match: KAA0042457.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 253 bits (646), Expect = 2.41e-75
Identity = 166/289 (57.44%), Postives = 174/289 (60.21%), Query Frame = 0


Query: 58  GGGVQKSSSSSHPISSTGGSHVARSDRVVSESGKSSVCYNCNQAGHYR----------NT 117
           G G Q+SS SSHPISSTGGSH+ARSDRVVSESGKSSVCYNC+Q GHYR          NT
Sbjct: 252 GRGAQRSSGSSHPISSTGGSHIARSDRVVSESGKSSVCYNCDQPGHYRRDCPHLIPGGNT 311

Query: 118 VWKTTSQT-----------------------------EEKVLAMTQQEVADAPNVVTKLE 177
           + KTTS T                             E KV AMTQQE ADAPNVV    
Sbjct: 312 ILKTTSHTVSQQPRTTRTSGEGSSGGKQKGPVGRSRPEGKVFAMTQQEAADAPNVV---- 371

Query: 178 SLTEELLISTPVRDSFIV-SVYRNCIVHIDGETLE----------FDVILGMDFLSKHYA 237
                      + DSFIV SVYR C V IDGETLE          FDVILGMDFLS HYA
Sbjct: 372 -----------IGDSFIVNSVYRKCSVLIDGETLEVDLISLNIQEFDVILGMDFLSNHYA 431

Query: 238 SLNY---EIFFRGDRKILSTCVISALKASKLFRKGCTAYLAYVMDTQVSKLMLEDIPVVR 293
           SLN    EI F+   K                  GCTAYLA V+DTQVSKL LEDI VVR
Sbjct: 432 SLNCHQKEIVFKRPGK------------------GCTAYLANVIDTQVSKLKLEDILVVR 491

[Close]

BLAST of IVF0004358 vs. NCBI nr
Match: TYK22919.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 253 bits (646), Expect = 2.41e-75
Identity = 166/289 (57.44%), Postives = 174/289 (60.21%), Query Frame = 0


Query: 58  GGGVQKSSSSSHPISSTGGSHVARSDRVVSESGKSSVCYNCNQAGHYR----------NT 117
           G G Q+SS SSHPISSTGGSH+ARSDRVVSESGKSSVCYNC+Q GHYR          NT
Sbjct: 252 GRGAQRSSGSSHPISSTGGSHIARSDRVVSESGKSSVCYNCDQPGHYRRDCPHLIPGGNT 311

Query: 118 VWKTTSQT-----------------------------EEKVLAMTQQEVADAPNVVTKLE 177
           + KTTS T                             E KV AMTQQE ADAPNVV    
Sbjct: 312 ILKTTSHTVSQQPRTTRTSGEGSSGGKQKGPVGRSRPEGKVFAMTQQEAADAPNVV---- 371

Query: 178 SLTEELLISTPVRDSFIV-SVYRNCIVHIDGETLE----------FDVILGMDFLSKHYA 237
                      + DSFIV SVYR C V IDGETLE          FDVILGMDFLS HYA
Sbjct: 372 -----------IGDSFIVNSVYRKCSVLIDGETLEVDLISLNIQEFDVILGMDFLSNHYA 431

Query: 238 SLNY---EIFFRGDRKILSTCVISALKASKLFRKGCTAYLAYVMDTQVSKLMLEDIPVVR 293
           SLN    EI F+   K                  GCTAYLA V+DTQVSKL LEDI VVR
Sbjct: 432 SLNCHQKEIVFKRPGK------------------GCTAYLANVIDTQVSKLKLEDILVVR 491

The following BLAST results are available for this feature:

BLAST of IVF0004358 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0004358 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UZM6	1.3e-88	65.48	Gag protease polyprotein-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A5D3DS52	7.0e-82	62.90	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold14...	[more]
A0A5A7SJ99	1.2e-68	62.60	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7TL70	3.3e-63	57.00	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24...	[more]
A0A5D3DI38	3.3e-63	57.00	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold33...	[more]

BLAST of IVF0004358 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0060484.1	2.29e-108	65.48	Gag protease polyprotein-like protein [Cucumis melo var. makuwa] >TYK18569.1 Gag...	[more]
KAA0067055.1	9.96e-100	62.90	reverse transcriptase [Cucumis melo var. makuwa] >TYK26292.1 reverse transcripta...	[more]
KAA0026280.1	2.45e-82	62.60	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK21476.1 D...	[more]
KAA0042457.1	2.41e-75	57.44	reverse transcriptase [Cucumis melo var. makuwa]	[more]
TYK22919.1	2.41e-75	57.44	reverse transcriptase [Cucumis melo var. makuwa]	[more]

BLAST of IVF0004358 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF08284	RVP_2	coord: 136..190 e-value: 2.8E-5 score: 24.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 60..84
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 142..293
None	No IPR available	PANTHER	PTHR24559:SF330	RNA-DIRECTED DNA POLYMERASE HOMOLOG	coord: 142..293

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0004358.2	IVF0004358.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043170	macromolecule metabolic process
biological_process	GO:0006807	nitrogen compound metabolic process
biological_process	GO:0044238	primary metabolic process