IVF0004332 (gene) Melon (IVF77) v1

Overview


Name	IVF0004332
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr05: 19163964 .. 19164191 (-)
RNA-Seq Expression	IVF0004332
Synteny	IVF0004332

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGAGGCCAATTGTTGCTACTATTGGAGATGTCACCATGTCCAGCTCGGGGGTCTTATGCTTGTTTTCTCTCATTCTTCTATCCATCTCTCTCTTATCAATGATATTATTTGCTTGTAACGACTTCTTTAAAATTCGAAGGAGAAGAGGTGGCGGCGATGGTGGTGGTGGAGGTGGTTGTGGTGGCGGAGGCTGTGGTGGAGGAGGTTGTGGTGGTGGAGATTGA

mRNA sequence

ATGGGGAGGCCAATTGTTGCTACTATTGGAGATGTCACCATGTCCAGCTCGGGGGTCTTATGCTTGTTTTCTCTCATTCTTCTATCCATCTCTCTCTTATCAATGATATTATTTGCTTGTAACGACTTCTTTAAAATTCGAAGGAGAAGAGGTGGCGGCGATGGTGGTGGTGGAGGTGGTTGTGGTGGCGGAGGCTGTGGTGGAGGAGGTTGTGGTGGTGGAGATTGA

Coding sequence (CDS)

ATGGGGAGGCCAATTGTTGCTACTATTGGAGATGTCACCATGTCCAGCTCGGGGGTCTTATGCTTGTTTTCTCTCATTCTTCTATCCATCTCTCTCTTATCAATGATATTATTTGCTTGTAACGACTTCTTTAAAATTCGAAGGAGAAGAGGTGGCGGCGATGGTGGTGGTGGAGGTGGTTGTGGTGGCGGAGGCTGTGGTGGAGGAGGTTGTGGTGGTGGAGATTGA

Protein sequence

MGRPIVATIGDVTMSSSGVLCLFSLILLSISLLSMILFACNDFFKIRRRRGGGDGGGGGGCGGGGCGGGGCGGGD

Homology

[Close]

BLAST of IVF0004332 vs. ExPASy TrEMBL
Match: A0A0A0LJD5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G062640 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 2.1e-14
Identity = 60/76 (78.95%), Postives = 63/76 (82.89%), Query Frame = 0


Query: 1  MGRPIVATIGDVTMSSSGVLCLFSLILLSISLLSMILFACNDFFKIRRRRGGGDGGGGG- 60
          MGRPI ATIGDVT S  G L L SLILLSISLLSMI+FAC++FF  RRRRGG DGG GG 
Sbjct: 1  MGRPIAATIGDVTTSIPGGLSLLSLILLSISLLSMIIFACSNFFNTRRRRGGDDGGAGGC 60

Query: 61 GCGGGGCGGGGCGGGD 76
           CGGGGCGGGGCGGGD
Sbjct: 61 ACGGGGCGGGGCGGGD 76

[Close]

BLAST of IVF0004332 vs. NCBI nr
Match: KGN61189.1 (hypothetical protein Csa_006542 [Cucumis sativus])

HSP 1 Score: 85.5 bits (210), Expect = 7.13e-20
Identity = 60/76 (78.95%), Postives = 63/76 (82.89%), Query Frame = 0


Query: 1  MGRPIVATIGDVTMSSSGVLCLFSLILLSISLLSMILFACNDFFKIRRRRGGGDGGGGG- 60
          MGRPI ATIGDVT S  G L L SLILLSISLLSMI+FAC++FF  RRRRGG DGG GG 
Sbjct: 1  MGRPIAATIGDVTTSIPGGLSLLSLILLSISLLSMIIFACSNFFNTRRRRGGDDGGAGGC 60

Query: 61 GCGGGGCGGGGCGGGD 75
           CGGGGCGGGGCGGGD
Sbjct: 61 ACGGGGCGGGGCGGGD 76

[Close]

BLAST of IVF0004332 vs. NCBI nr
Match: KAG6604774.1 (hypothetical protein SDJN03_02091, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 56.6 bits (135), Expect = 2.06e-08
Identity = 44/75 (58.67%), Postives = 51/75 (68.00%), Query Frame = 0


Query: 1  MGRPIVATIG------DVTMSSSGVLCLFSLILLSISLLSMILFACNDFFKIRRRRGGG- 60
          MGRPI+A  G      DVT+ SSG L L S ILLSISL+SMI+FAC +    +R+ GGG 
Sbjct: 1  MGRPILAAAGGGGGFQDVTLVSSGGLFLLSAILLSISLVSMIIFACGNSNDPKRKDGGGG 60

Query: 61 ----DGGGGGGCGGG 64
              DGGGGGGCGGG
Sbjct: 61 CGGGDGGGGGGCGGG 75

[Close]

BLAST of IVF0004332 vs. NCBI nr
Match: KAG6603229.1 (hypothetical protein SDJN03_03838, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 56.2 bits (134), Expect = 2.53e-08
Identity = 45/74 (60.81%), Postives = 54/74 (72.97%), Query Frame = 0


Query: 1  MGRPIVAT----IGDVTMSSSGVLCLFSLILLSISLLSMILFACNDFF-KIRRRRGGGDG 60
          MGRPI A     +GDVT+ SSG L L + IL+S+SL+SMI+FAC D   K +R+R GG  
Sbjct: 1  MGRPIPAADGGGLGDVTLFSSGGLLLLATILMSLSLVSMIIFACGDSSRKNKRKRNGG-- 60

Query: 61 GGGGGCGGGGCGGG 69
          GGG GCGGGGCGGG
Sbjct: 61 GGGAGCGGGGCGGG 72

[Close]

BLAST of IVF0004332 vs. NCBI nr
Match: KAG6603228.1 (hypothetical protein SDJN03_03837, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 50.1 bits (118), Expect = 1.28e-05
Identity = 40/70 (57.14%), Postives = 48/70 (68.57%), Query Frame = 0


Query: 1  MGRPIVAT----IGDVTMSSSGVLCLFSLILLSISLLSMILFACNDFFKI--RRRRGGG- 60
          MGR I A     +GDVT+ SSG L L + +LLS+SL+SMI+FAC D      R+R GGG 
Sbjct: 1  MGRSIPAADGGGLGDVTLFSSGGLLLLATVLLSLSLVSMIIFACGDSSSDNKRKRNGGGC 60

Query: 61 DGGGGGGCGG 63
           GGGGGGCGG
Sbjct: 61 GGGGGGGCGG 70

[Close]

BLAST of IVF0004332 vs. NCBI nr
Match: XP_034695771.1 (glycine-rich protein 5-like [Vitis riparia])

HSP 1 Score: 49.7 bits (117), Expect = 1.49e-05
Identity = 31/51 (60.78%), Postives = 39/51 (76.47%), Query Frame = 0


Query: 15 SSSGVLCLFSLILLSISLLSMILFACNDFFKIRRRRGGGDGGGGGGCGGGG 65
          SSSG L L  +I++S+S++SM++FAC D    RR  GGG GGGGGGCGGGG
Sbjct: 25 SSSGALLLLCMIIMSLSIISMVIFACGDSSTSRRGGGGGGGGGGGGCGGGG 75

The following BLAST results are available for this feature:

BLAST of IVF0004332 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0004332 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJD5	2.1e-14	78.95	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G062640 PE=4 SV=1	[more]

BLAST of IVF0004332 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN61189.1	7.13e-20	78.95	hypothetical protein Csa_006542 [Cucumis sativus]	[more]
KAG6604774.1	2.06e-08	58.67	hypothetical protein SDJN03_02091, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6603229.1	2.53e-08	60.81	hypothetical protein SDJN03_03838, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6603228.1	1.28e-05	57.14	hypothetical protein SDJN03_03837, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_034695771.1	1.49e-05	60.78	glycine-rich protein 5-like [Vitis riparia]	[more]

BLAST of IVF0004332 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..75

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0004332.2	IVF0004332.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane