IVF0004313 (gene) Melon (IVF77) v1

Overview
NameIVF0004313
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionDNA-directed DNA polymerase
Locationchr11: 7376435 .. 7376895 (+)
RNA-Seq ExpressionIVF0004313
SyntenyIVF0004313
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGACCCTGAAAGCTTCACGCTACCTTGCTCAATTGGCAGGATCGATCTAGGTCGTGCTCTATGTGACTTGGGAGCAAGCATTAATTTGATGCCTCTTTCTATATATTTAAGAAGTTGAAGACAAGGGAGCTGCAACCAACTCATACGAGAGTCCAATTTGTTCGTAGGTCCACTTTCAAACCTAAGGACGAGATTGAAGATGTTTTGGTTAAGGTGGACAAATTTTTACTTCTCACAAACTTTGTCAGTCTGGACTATGAAGCTAATCGGAAGGTACCTATCATTTTAGGGCGGCCATTCCAATCAACTGGTCGTGCCCTCATACATGTCCACCAAGGGGAACTTACAATGCTTTTTAATGACGAAAAAATTACATTTAATGTGGCTAACGCAATGAAGTTCCCTGATGATGTTGCGAGTTGCAATATAAAAGAGTTCCTGGGTTGGGACTATTAG

mRNA sequence

ATGGCAGACCCTGAAAGCTTCACGCTACCTTGCTCAATTGGCAGGATCGATCTAGGTCGTGCTCTATGTGACTTGGGAGCAAGCATTAATTTGATGCCTCTTTCTATATATTTAAGAATCCAATTTGTTCGTAGGTCCACTTTCAAACCTAAGGACGAGATTGAAGATGTTTTGGTTAAGGTGGACAAATTTTTACTTCTCACAAACTTTGTCAGTCTGGACTATGAAGCTAATCGGAAGGTACCTATCATTTTAGGGCGGCCATTCCAATCAACTGGTCGTGCCCTCATACATGTCCACCAAGGGGAACTTACAATGCTTTTTAATGACGAAAAAATTACATTTAATGTGGCTAACGCAATGAAGTTCCCTGATGATGTTGCGAGTTGCAATATAAAAGAGTTCCTGGGTTGGGACTATTAG

Coding sequence (CDS)

ATGGCAGACCCTGAAAGCTTCACGCTACCTTGCTCAATTGGCAGGATCGATCTAGGTCGTGCTCTATGTGACTTGGGAGCAAGCATTAATTTGATGCCTCTTTCTATATATTTAAGAATCCAATTTGTTCGTAGGTCCACTTTCAAACCTAAGGACGAGATTGAAGATGTTTTGGTTAAGGTGGACAAATTTTTACTTCTCACAAACTTTGTCAGTCTGGACTATGAAGCTAATCGGAAGGTACCTATCATTTTAGGGCGGCCATTCCAATCAACTGGTCGTGCCCTCATACATGTCCACCAAGGGGAACTTACAATGCTTTTTAATGACGAAAAAATTACATTTAATGTGGCTAACGCAATGAAGTTCCCTGATGATGTTGCGAGTTGCAATATAAAAGAGTTCCTGGGTTGGGACTATTAG

Protein sequence

MADPESFTLPCSIGRIDLGRALCDLGASINLMPLSIYLRIQFVRRSTFKPKDEIEDVLVKVDKFLLLTNFVSLDYEANRKVPIILGRPFQSTGRALIHVHQGELTMLFNDEKITFNVANAMKFPDDVASCNIKEFLGWDY
Homology
BLAST of IVF0004313 vs. ExPASy TrEMBL
Match: A0A5A7VJ95 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2484G00710 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 4.1e-40
Identity = 91/149 (61.07%), Postives = 107/149 (71.81%), Query Frame = 0

Query: 1   MADPESFTLPCSIGRIDLGRALCDLGASINLMPLSIY------------LRIQFVRRSTF 60
           M D  SFT+PCSI  +DLG  LCDLGASINLMPLSI+            +R+QFV RS  
Sbjct: 120 MTDCRSFTVPCSINNMDLGHVLCDLGASINLMPLSIFKKLEIEEVQPMHMRLQFVDRSIA 179

Query: 61  KPKDEIEDVLVKVDKFLLLTNFVSLDYEANRKVPIILGRPFQSTGRALIHVHQGELTMLF 120
           K + +IED+LVKVDKFL   +F+ LDYEAN++VPII GRPF STG ALI VHQGELTM F
Sbjct: 180 KHEGKIEDILVKVDKFLFHADFIILDYEANQEVPIIFGRPFLSTGHALIDVHQGELTMRF 239

Query: 121 NDEKITFNVANAMKFPDDVASCNIKEFLG 138
           NDE + FNV NAMKFP D  + ++ E LG
Sbjct: 240 NDE-VKFNVMNAMKFPTDDKNYSMIESLG 267

BLAST of IVF0004313 vs. ExPASy TrEMBL
Match: A0A1S3CN55 (uncharacterized protein LOC103502805 OS=Cucumis melo OX=3656 GN=LOC103502805 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 4.1e-40
Identity = 91/149 (61.07%), Postives = 107/149 (71.81%), Query Frame = 0

Query: 1   MADPESFTLPCSIGRIDLGRALCDLGASINLMPLSIY------------LRIQFVRRSTF 60
           M D  SFT+PCSI  +DLG  LCDLGASINLMPLSI+            +R+QFV RS  
Sbjct: 31  MTDCRSFTVPCSINNMDLGHVLCDLGASINLMPLSIFKKLEIEEVQPMHMRLQFVDRSIA 90

Query: 61  KPKDEIEDVLVKVDKFLLLTNFVSLDYEANRKVPIILGRPFQSTGRALIHVHQGELTMLF 120
           K + +IED+LVKVDKFL   +F+ LDYEAN++VPII GRPF STG ALI VHQGELTM F
Sbjct: 91  KHEGKIEDILVKVDKFLFHADFIILDYEANQEVPIIFGRPFLSTGHALIDVHQGELTMRF 150

Query: 121 NDEKITFNVANAMKFPDDVASCNIKEFLG 138
           NDE + FNV NAMKFP D  + ++ E LG
Sbjct: 151 NDE-VKFNVMNAMKFPTDDKNYSMIESLG 178

BLAST of IVF0004313 vs. ExPASy TrEMBL
Match: A0A5D3DPZ2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold862G00150 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 1.5e-37
Identity = 86/140 (61.43%), Postives = 100/140 (71.43%), Query Frame = 0

Query: 1   MADPESFTLPCSIGRIDLGRALCDLGASINLMPLSIYLRIQFVRRSTFKPKDEIEDVLVK 60
           M DP SFT+  S G +DLG ALCDLGASINLMPLSI+ ++          + +IEDVLVK
Sbjct: 42  MTDPRSFTVSYSKGGMDLGCALCDLGASINLMPLSIFKKVGI-------GEGKIEDVLVK 101

Query: 61  VDKFLLLTNFVSLDYEANRKVPIILGRPFQSTGRALIHVHQGELTMLFNDEKITFNVANA 120
           VDKFL   +FV LDY+A+RKVPIILGRPF ST   LI VHQGELTM FNDE+I FNV   
Sbjct: 102 VDKFLFSEDFVILDYKADRKVPIILGRPFLSTSCTLIGVHQGELTMHFNDEEIKFNVVKP 161

Query: 121 MKFPDDVASCNIKEFLGWDY 141
           MKFP DV + +  +  GWDY
Sbjct: 162 MKFPSDVENYSAIKSFGWDY 174

BLAST of IVF0004313 vs. ExPASy TrEMBL
Match: A0A1S3BHX3 (uncharacterized protein LOC103490055 OS=Cucumis melo OX=3656 GN=LOC103490055 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 5.6e-37
Identity = 86/148 (58.11%), Postives = 101/148 (68.24%), Query Frame = 0

Query: 1   MADPESFTLPCSIGRIDLGRALCDLGASINLMPLSIY------------LRIQFVRRSTF 60
           M  P SF +PCSI  +DLG  LCDLGASINLMPLSI+            +R Q   RS  
Sbjct: 42  MTYPGSFKVPCSIDGMDLGHVLCDLGASINLMPLSIFKKLKIKEVQPTHMRFQLADRSIT 101

Query: 61  KPKDEIEDVLVKVDKFLLLTNFVSLDYEANRKVPIILGRPFQSTGRALIHVHQGELTMLF 120
            PK +IEDVLVKVDKFL   +F+ LDYEA+ +V IIL R F STGRAL ++HQGELT+ F
Sbjct: 102 NPKGKIEDVLVKVDKFLFFADFIILDYEADEEVLIILRRLFLSTGRALTYIHQGELTVFF 161

Query: 121 NDEKITFNVANAMKFPDDVASCNIKEFL 137
           N+++I FNV NAMKFP D  SCN  E L
Sbjct: 162 NNKEIKFNVINAMKFPLDDESCNTIESL 189

BLAST of IVF0004313 vs. ExPASy TrEMBL
Match: A0A6J1DY39 (uncharacterized protein LOC111025653 OS=Momordica charantia OX=3673 GN=LOC111025653 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 2.1e-36
Identity = 80/144 (55.56%), Postives = 103/144 (71.53%), Query Frame = 0

Query: 1   MADPESFTLPCSIGRIDLGRALCDLGASINLMPLSIY------------LRIQFVRRSTF 60
           + DP SFT+PC IG  D+GRALCDLGASINLMPLSI+            + +Q   RS  
Sbjct: 612 LKDPGSFTIPCLIGGKDVGRALCDLGASINLMPLSIFKKFEIGKASPTTVTLQLADRSIT 671

Query: 61  KPKDEIEDVLVKVDKFLLLTNFVSLDYEANRKVPIILGRPFQSTGRALIHVHQGELTMLF 120
           KP+ +IEDVLVKVDKF+  T+F+ LD EA++ VPIILGRPF +TG  LI V +GELTM  
Sbjct: 672 KPEGKIEDVLVKVDKFIFPTDFIILDCEADKDVPIILGRPFLATGETLIDVKKGELTMRV 731

Query: 121 NDEKITFNVANAMKFPDDVASCNI 133
           +D+K+TFN+ +AMK+ DD+  C +
Sbjct: 732 DDQKVTFNMLDAMKYXDDMEECAV 755

BLAST of IVF0004313 vs. NCBI nr
Match: XP_008465121.1 (PREDICTED: uncharacterized protein LOC103502805 [Cucumis melo])

HSP 1 Score: 172 bits (435), Expect = 2.33e-51
Identity = 91/149 (61.07%), Postives = 107/149 (71.81%), Query Frame = 0

Query: 1   MADPESFTLPCSIGRIDLGRALCDLGASINLMPLSIY------------LRIQFVRRSTF 60
           M D  SFT+PCSI  +DLG  LCDLGASINLMPLSI+            +R+QFV RS  
Sbjct: 31  MTDCRSFTVPCSINNMDLGHVLCDLGASINLMPLSIFKKLEIEEVQPMHMRLQFVDRSIA 90

Query: 61  KPKDEIEDVLVKVDKFLLLTNFVSLDYEANRKVPIILGRPFQSTGRALIHVHQGELTMLF 120
           K + +IED+LVKVDKFL   +F+ LDYEAN++VPII GRPF STG ALI VHQGELTM F
Sbjct: 91  KHEGKIEDILVKVDKFLFHADFIILDYEANQEVPIIFGRPFLSTGHALIDVHQGELTMRF 150

Query: 121 NDEKITFNVANAMKFPDDVASCNIKEFLG 137
           NDE + FNV NAMKFP D  + ++ E LG
Sbjct: 151 NDE-VKFNVMNAMKFPTDDKNYSMIESLG 178

BLAST of IVF0004313 vs. NCBI nr
Match: XP_030478287.1 (uncharacterized protein LOC115695357 [Cannabis sativa])

HSP 1 Score: 168 bits (426), Expect = 2.72e-49
Identity = 83/143 (58.04%), Postives = 104/143 (72.73%), Query Frame = 0

Query: 1   MADPESFTLPCSIGRIDLGRALCDLGASINLMPLSIYLRI------------QFVRRSTF 60
           + DP SFT+PCSIG  D+GRALCDLGASINLMP+SI+ ++            Q   RS  
Sbjct: 91  LKDPGSFTIPCSIGGRDVGRALCDLGASINLMPMSIFKKLGIGEARPTTVTLQLADRSMA 150

Query: 61  KPKDEIEDVLVKVDKFLLLTNFVSLDYEANRKVPIILGRPFQSTGRALIHVHQGELTMLF 120
            P+ +IEDVLV+VDKF+   +F+ LDYEA+R VPIILGRPF +TGR LI V  GELTM  
Sbjct: 151 HPEGKIEDVLVQVDKFIFPADFIILDYEADRDVPIILGRPFLATGRTLIDVQNGELTMRV 210

Query: 121 NDEKITFNVANAMKFPDDVASCN 131
           ND+K+TFNV NAM+FPD++  C+
Sbjct: 211 NDQKVTFNVFNAMRFPDEIEECS 233

BLAST of IVF0004313 vs. NCBI nr
Match: XP_030504924.1 (uncharacterized protein LOC115719886 [Cannabis sativa])

HSP 1 Score: 168 bits (426), Expect = 6.10e-49
Identity = 83/143 (58.04%), Postives = 104/143 (72.73%), Query Frame = 0

Query: 1   MADPESFTLPCSIGRIDLGRALCDLGASINLMPLSIYLRI------------QFVRRSTF 60
           + DP SFT+PCSIG  D+GRALCDLGASINLMP+SI+ ++            Q   RS  
Sbjct: 10  LKDPGSFTIPCSIGGRDVGRALCDLGASINLMPMSIFKKLGIGEARPTTVTLQLADRSMA 69

Query: 61  KPKDEIEDVLVKVDKFLLLTNFVSLDYEANRKVPIILGRPFQSTGRALIHVHQGELTMLF 120
            P+ +IEDVLV+VDKF+   +F+ LDYEA+R VPIILGRPF +TGR LI V  GELTM  
Sbjct: 70  HPEGKIEDVLVQVDKFIFPADFIILDYEADRDVPIILGRPFLATGRTLIDVQNGELTMRV 129

Query: 121 NDEKITFNVANAMKFPDDVASCN 131
           ND+K+TFNV NAM+FPD++  C+
Sbjct: 130 NDQKVTFNVFNAMRFPDEIEECS 152

BLAST of IVF0004313 vs. NCBI nr
Match: XP_030477929.1 (uncharacterized protein LOC115694963 [Cannabis sativa])

HSP 1 Score: 168 bits (426), Expect = 1.13e-48
Identity = 83/143 (58.04%), Postives = 104/143 (72.73%), Query Frame = 0

Query: 1   MADPESFTLPCSIGRIDLGRALCDLGASINLMPLSIYLRI------------QFVRRSTF 60
           + DP SFT+PCSIG  D+GRALCDLGASINLMP+SI+ ++            Q   RS  
Sbjct: 70  LKDPGSFTIPCSIGGRDVGRALCDLGASINLMPMSIFKKLGIGEARPTTVTLQLADRSMA 129

Query: 61  KPKDEIEDVLVKVDKFLLLTNFVSLDYEANRKVPIILGRPFQSTGRALIHVHQGELTMLF 120
            P+ +IEDVLV+VDKF+   +F+ LDYEA+R VPIILGRPF +TGR LI V  GELTM  
Sbjct: 130 HPEGKIEDVLVQVDKFIFPADFIILDYEADRDVPIILGRPFLATGRTLIDVQNGELTMRV 189

Query: 121 NDEKITFNVANAMKFPDDVASCN 131
           ND+K+TFNV NAM+FPD++  C+
Sbjct: 190 NDQKVTFNVFNAMRFPDEIEECS 212

BLAST of IVF0004313 vs. NCBI nr
Match: KAA0067858.1 (uncharacterized protein E6C27_scaffold2484G00710 [Cucumis melo var. makuwa])

HSP 1 Score: 172 bits (435), Expect = 1.15e-48
Identity = 91/149 (61.07%), Postives = 107/149 (71.81%), Query Frame = 0

Query: 1   MADPESFTLPCSIGRIDLGRALCDLGASINLMPLSIY------------LRIQFVRRSTF 60
           M D  SFT+PCSI  +DLG  LCDLGASINLMPLSI+            +R+QFV RS  
Sbjct: 120 MTDCRSFTVPCSINNMDLGHVLCDLGASINLMPLSIFKKLEIEEVQPMHMRLQFVDRSIA 179

Query: 61  KPKDEIEDVLVKVDKFLLLTNFVSLDYEANRKVPIILGRPFQSTGRALIHVHQGELTMLF 120
           K + +IED+LVKVDKFL   +F+ LDYEAN++VPII GRPF STG ALI VHQGELTM F
Sbjct: 180 KHEGKIEDILVKVDKFLFHADFIILDYEANQEVPIIFGRPFLSTGHALIDVHQGELTMRF 239

Query: 121 NDEKITFNVANAMKFPDDVASCNIKEFLG 137
           NDE + FNV NAMKFP D  + ++ E LG
Sbjct: 240 NDE-VKFNVMNAMKFPTDDKNYSMIESLG 267

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7VJ954.1e-4061.07Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A1S3CN554.1e-4061.07uncharacterized protein LOC103502805 OS=Cucumis melo OX=3656 GN=LOC103502805 PE=... [more]
A0A5D3DPZ21.5e-3761.43Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3BHX35.6e-3758.11uncharacterized protein LOC103490055 OS=Cucumis melo OX=3656 GN=LOC103490055 PE=... [more]
A0A6J1DY392.1e-3655.56uncharacterized protein LOC111025653 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
Match NameE-valueIdentityDescription
XP_008465121.12.33e-5161.07PREDICTED: uncharacterized protein LOC103502805 [Cucumis melo][more]
XP_030478287.12.72e-4958.04uncharacterized protein LOC115695357 [Cannabis sativa][more]
XP_030504924.16.10e-4958.04uncharacterized protein LOC115719886 [Cannabis sativa][more]
XP_030477929.11.13e-4858.04uncharacterized protein LOC115694963 [Cannabis sativa][more]
KAA0067858.11.15e-4861.07uncharacterized protein E6C27_scaffold2484G00710 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021109Aspartic peptidase domain superfamilyGENE3D2.40.70.10Acid Proteasescoord: 1..121
e-value: 1.3E-14
score: 56.0
NoneNo IPR availablePANTHERPTHR33067:SF28SUBFAMILY NOT NAMEDcoord: 3..132
NoneNo IPR availablePANTHERPTHR33067FAMILY NOT NAMEDcoord: 3..132

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0004313.1IVF0004313.1mRNA