IVF0003994 (gene) Melon (IVF77) v1

Overview


Name	IVF0003994
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrotransposon protein
Location	chr05: 17827158 .. 17827325 (+)
RNA-Seq Expression	IVF0003994
Synteny	IVF0003994

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACATATTGCGATGACGTTTACGACGTGGACGAGGGAGACTCTGCGTACGCGACAACCACCACTTCAGAAGACATTCACGACATTGAGACGACAAACGAGTGGTCTCAGTGGTGTGACGAACTAACTGAATTGATGTTCACAGATTGGCAGTTGTGTAACGCTTAG

mRNA sequence

ATGACATATTGCGATGACGTTTACGACGTGGACGAGGGAGACTCTGCGTACGCGACAACCACCACTTCAGAAGACATTCACGACATTGAGACGACAAACGAGTGGTCTCAGTGGTGTGACGAACTAACTGAATTGATGTTCACAGATTGGCAGTTGTGTAACGCTTAG

Coding sequence (CDS)

ATGACATATTGCGATGACGTTTACGACGTGGACGAGGGAGACTCTGCGTACGCGACAACCACCACTTCAGAAGACATTCACGACATTGAGACGACAAACGAGTGGTCTCAGTGGTGTGACGAACTAACTGAATTGATGTTCACAGATTGGCAGTTGTGTAACGCTTAG

Protein sequence

MTYCDDVYDVDEGDSAYATTTTSEDIHDIETTNEWSQWCDELTELMFTDWQLCNA

Homology

[Close]

BLAST of IVF0003994 vs. ExPASy TrEMBL
Match: A0A5A7TXJ0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G001690 PE=3 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.6e-24
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1   MTYCDDVYDVDEGDSAYATTTTSEDIHDIETTNEWSQWCDELTELMFTDWQLCNA 56
           MTYCDDVYDVDEGDSAYATTTTSEDIHDIETTNEWSQWCDELTELMFTDWQLCNA
Sbjct: 92  MTYCDDVYDVDEGDSAYATTTTSEDIHDIETTNEWSQWCDELTELMFTDWQLCNA 146

[Close]

BLAST of IVF0003994 vs. ExPASy TrEMBL
Match: A0A5A7SNH9 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G001990 PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.1e-17
Identity = 47/55 (85.45%), Postives = 48/55 (87.27%), Query Frame = 0


Query: 1   MTYCDDVYDVDEGDSAYATTTTSEDIHDIETTNEWSQWCDELTELMFTDWQLCNA 56
           MTYCDDVYDVDEGDSAYATTT SEDIH IET NEWSQW DEL E MFTDW+L NA
Sbjct: 246 MTYCDDVYDVDEGDSAYATTTASEDIHYIETKNEWSQWRDELAESMFTDWKLRNA 300

[Close]

BLAST of IVF0003994 vs. ExPASy TrEMBL
Match: A0A5D3D656 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold6384G00040 PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.1e-17
Identity = 47/55 (85.45%), Postives = 48/55 (87.27%), Query Frame = 0


Query: 1   MTYCDDVYDVDEGDSAYATTTTSEDIHDIETTNEWSQWCDELTELMFTDWQLCNA 56
           MTYCDDVYDVDEGDSAYATTT SEDIH IET NEWSQW DEL E MFTDW+L NA
Sbjct: 232 MTYCDDVYDVDEGDSAYATTTASEDIHYIETKNEWSQWRDELAESMFTDWKLRNA 286

[Close]

BLAST of IVF0003994 vs. ExPASy TrEMBL
Match: A0A1S4DU05 (uncharacterized protein LOC107990543 OS=Cucumis melo OX=3656 GN=LOC107990543 PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.1e-17
Identity = 47/55 (85.45%), Postives = 48/55 (87.27%), Query Frame = 0


Query: 1   MTYCDDVYDVDEGDSAYATTTTSEDIHDIETTNEWSQWCDELTELMFTDWQLCNA 56
           MTYCDDVYDVDEGDSAYATTT SEDIH IET NEWSQW DEL E MFTDW+L NA
Sbjct: 143 MTYCDDVYDVDEGDSAYATTTASEDIHYIETKNEWSQWRDELAESMFTDWKLRNA 197

[Close]

BLAST of IVF0003994 vs. ExPASy TrEMBL
Match: A0A5D3BDZ0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold10G00280 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.5e-17
Identity = 47/55 (85.45%), Postives = 48/55 (87.27%), Query Frame = 0


Query: 1  MTYCDDVYDVDEGDSAYATTTTSEDIHDIETTNEWSQWCDELTELMFTDWQLCNA 56
          MTYCDD+ DVDEGDSAYATTT SEDIH IETTNEWSQW DEL E MFTDWQL NA
Sbjct: 1  MTYCDDIDDVDEGDSAYATTTASEDIHYIETTNEWSQWRDELAESMFTDWQLRNA 55

[Close]

BLAST of IVF0003994 vs. NCBI nr
Match: KAA0047704.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK08358.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 120 bits (300), Expect = 4.48e-33
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1   MTYCDDVYDVDEGDSAYATTTTSEDIHDIETTNEWSQWCDELTELMFTDWQLCNA 55
           MTYCDDVYDVDEGDSAYATTTTSEDIHDIETTNEWSQWCDELTELMFTDWQLCNA
Sbjct: 92  MTYCDDVYDVDEGDSAYATTTTSEDIHDIETTNEWSQWCDELTELMFTDWQLCNA 146

[Close]

BLAST of IVF0003994 vs. NCBI nr
Match: KAA0054051.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ96871.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 97.1 bits (240), Expect = 4.78e-25
Identity = 47/55 (85.45%), Postives = 48/55 (87.27%), Query Frame = 0


Query: 1  MTYCDDVYDVDEGDSAYATTTTSEDIHDIETTNEWSQWCDELTELMFTDWQLCNA 55
          MTYCDD+ DVDEGDSAYATTT SEDIH IETTNEWSQW DEL E MFTDWQL NA
Sbjct: 1  MTYCDDIDDVDEGDSAYATTTASEDIHYIETTNEWSQWRDELAESMFTDWQLRNA 55

[Close]

BLAST of IVF0003994 vs. NCBI nr
Match: KAA0059918.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK24865.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 96.7 bits (239), Expect = 2.80e-24
Identity = 45/55 (81.82%), Postives = 49/55 (89.09%), Query Frame = 0


Query: 1   MTYCDDVYDVDEGDSAYATTTTSEDIHDIETTNEWSQWCDELTELMFTDWQLCNA 55
           MTYCDDV DVDEG+SAYATTTT+ED+H IET NEWSQW DEL + MFTDWQLCNA
Sbjct: 53  MTYCDDVDDVDEGNSAYATTTTTEDVHYIETKNEWSQWHDELAKSMFTDWQLCNA 107

[Close]

BLAST of IVF0003994 vs. NCBI nr
Match: XP_016899482.1 (PREDICTED: uncharacterized protein LOC107990543 [Cucumis melo])

HSP 1 Score: 97.4 bits (241), Expect = 1.47e-23
Identity = 47/55 (85.45%), Postives = 48/55 (87.27%), Query Frame = 0


Query: 1   MTYCDDVYDVDEGDSAYATTTTSEDIHDIETTNEWSQWCDELTELMFTDWQLCNA 55
           MTYCDDVYDVDEGDSAYATTT SEDIH IET NEWSQW DEL E MFTDW+L NA
Sbjct: 143 MTYCDDVYDVDEGDSAYATTTASEDIHYIETKNEWSQWRDELAESMFTDWKLRNA 197

[Close]

BLAST of IVF0003994 vs. NCBI nr
Match: TYK19044.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 97.4 bits (241), Expect = 8.94e-23
Identity = 47/55 (85.45%), Postives = 48/55 (87.27%), Query Frame = 0


Query: 1   MTYCDDVYDVDEGDSAYATTTTSEDIHDIETTNEWSQWCDELTELMFTDWQLCNA 55
           MTYCDDVYDVDEGDSAYATTT SEDIH IET NEWSQW DEL E MFTDW+L NA
Sbjct: 232 MTYCDDVYDVDEGDSAYATTTASEDIHYIETKNEWSQWRDELAESMFTDWKLRNA 286

The following BLAST results are available for this feature:

BLAST of IVF0003994 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0003994 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TXJ0	1.6e-24	100.00	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7SNH9	1.1e-17	85.45	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]
A0A5D3D656	1.1e-17	85.45	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A1S4DU05	1.1e-17	85.45	uncharacterized protein LOC107990543 OS=Cucumis melo OX=3656 GN=LOC107990543 PE=...	[more]
A0A5D3BDZ0	1.5e-17	85.45	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of IVF0003994 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0047704.1	4.48e-33	100.00	retrotransposon protein [Cucumis melo var. makuwa] >TYK08358.1 retrotransposon p...	[more]
KAA0054051.1	4.78e-25	85.45	retrotransposon protein [Cucumis melo var. makuwa] >TYJ96871.1 retrotransposon p...	[more]
KAA0059918.1	2.80e-24	81.82	retrotransposon protein [Cucumis melo var. makuwa] >TYK24865.1 retrotransposon p...	[more]
XP_016899482.1	1.47e-23	85.45	PREDICTED: uncharacterized protein LOC107990543 [Cucumis melo]	[more]
TYK19044.1	8.94e-23	85.45	putative nuclease HARBI1 [Cucumis melo var. makuwa]	[more]

BLAST of IVF0003994 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0003994.1	IVF0003994.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding