IVF0003884 (gene) Melon (IVF77) v1

Overview


Name	IVF0003884
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	LINE-1 retrotransposable element ORF2 protein
Location	chr05: 23751502 .. 23752851 (-)
RNA-Seq Expression	IVF0003884
Synteny	IVF0003884

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACTACTTAAGCAGATTGCTATCCCATCTGGAAACAAAAGGGGCTATCAAAGGGGTCTCCTTCAACAACTTTTGCAACATATCACACCTTCTTTTTGCGGACGATGTACTCATCTTTGTTGAAGACAATGAAAAGTATTTAAATAATTTACAGATGGCGCTCACCCTCTTTGAGAAAGCCTCTGGGCTGACTTTCAACAACTCAAAGTCAACAATAAGCCCCATAAACATATCTGCTGATAGAACAGAACAGATAGCTAGCTTCTTCGGGTTTCAAACTAAATTCCTTCCAGTCAACTACCTAGGAGTTCCGCTGGGAGGAAACCCAAGATCCAGATCTTTTTGGGGACAAACAATTGAATGTATCCACAAAAAACTAAATGGTTGGAAATACTCACAAATTTCCAAAGGAGGAAGGCTTACCCTTTTAAAAGCTTCTCTATCGAGCCTTCCCACCTATCAGCTCTCAACATTCAAAGCTCCTATCTCTGTATACAAAGAAATTGAAAAACATTGGAGAGATTTCTTGTGGGGAGGAAGTGAGGACAAACAAAATGCTCACCTAATAAACTGGAGCATCTGTACCTCCCCTAAGGAGTTAGGAGGCCTGGGAATTAGTAAGCTAAAGGACACAAACCAAGCCCTCCTATGCAAATGGCTATGGAGATACCACAATGAGTCAAACTCTCTTTGGAAAAAGTGTATAGATGCAAAATACACAAAAAACCATCAAGGAGACATTCCGGTGGTAGGCAGAAACAGTAGTGCAAATTCTCCTTGGAATGCAATCAAAAAATGGAAAGATTGGTTTGAATCAAAAATCAGCTGGATACCCAACGATGGCTCCTCCCTCTCCTTTTGGCACAGCAAGTGGCAAAACAATATCCCTCTGTCCCTACAAATTCCCAGACTTTATGCTCTCTCGAATATACAATCAGCTACTGTAAAGGAAGTTTGGGACCAAGGTTCTGATGAATGGAACATTAAACCAAGACGACCTTTAAATGAGAGGGAACAACAAATATGGGACTCCATCAAAATGAGTTTGCCTCGGGTTCACAACAACAGAGGGATGAGCAAGCCTTCTTGGAATCCAAGTGACAGCAATAAGTACACGGTGGCTTCAGCAAAAGATAATGCATTCAAGGAAACCTCAATTCCAAAGGAGACAAACTGGGAAAAGGAGCTGAAACACCTCTGGAGGTCTCACATTCCGCAAAAATGTAAATTCTTCATTTGGACCATGGTTCATCAGAAACTCAACACAATGTTATCCAAAAGAGGAACCCAAGCATGTGCCTCAACCCAAACTGGTGCATATCCTGCCGATCCTCAAACGAAGACATGA

mRNA sequence

ATGGACTACTTAAGCAGATTGCTATCCCATCTGGAAACAAAAGGGGCTATCAAAGGGGTCTCCTTCAACAACTTTTGCAACATATCACACCTTCTTTTTGCGGACGATGTACTCATCTTTGTTGAAGACAATGAAAAGTATTTAAATAATTTACAGATGGCGCTCACCCTCTTTGAGAAAGCCTCTGGGCTGACTTTCAACAACTCAAAGTCAACAATAAGCCCCATAAACATATCTGCTGATAGAACAGAACAGATAGCTAGCTTCTTCGGGTTTCAAACTAAATTCCTTCCAGTCAACTACCTAGGAGTTCCGCTGGGAGGAAACCCAAGATCCAGATCTTTTTGGGGACAAACAATTGAATGTATCCACAAAAAACTAAATGGTTGGAAATACTCACAAATTTCCAAAGGAGGAAGGCTTACCCTTTTAAAAGCTTCTCTATCGAGCCTTCCCACCTATCAGCTCTCAACATTCAAAGCTCCTATCTCTGTATACAAAGAAATTGAAAAACATTGGAGAGATTTCTTGTGGGGAGGAAGTGAGGACAAACAAAATGCTCACCTAATAAACTGGAGCATCTGTACCTCCCCTAAGGAGTTAGGAGGCCTGGGAATTAGTAAGCTAAAGGACACAAACCAAGCCCTCCTATGCAAATGGCTATGGAGATACCACAATGAGTCAAACTCTCTTTGGAAAAAGTGTATAGATGCAAAATACACAAAAAACCATCAAGGAGACATTCCGGTGGTAGGCAGAAACAGTAGTGCAAATTCTCCTTGGAATGCAATCAAAAAATGGAAAGATTGGTTTGAATCAAAAATCAGCTGGATACCCAACGATGGCTCCTCCCTCTCCTTTTGGCACAGCAAGTGGCAAAACAATATCCCTCTGTCCCTACAAATTCCCAGACTTTATGCTCTCTCGAATATACAATCAGCTACTGTAAAGGAAGTTTGGGACCAAGGTTCTGATGAATGGAACATTAAACCAAGACGACCTTTAAATGAGAGGGAACAACAAATATGGGACTCCATCAAAATGAGTTTGCCTCGGGTTCACAACAACAGAGGGATGAGCAAGCCTTCTTGGAATCCAAGTGACAGCAATAAGTACACGGTGGCTTCAGCAAAAGATAATGCATTCAAGGAAACCTCAATTCCAAAGGAGACAAACTGGGAAAAGGAGCTGAAACACCTCTGGAGGTCTCACATTCCGCAAAAATGTAAATTCTTCATTTGGACCATGGTTCATCAGAAACTCAACACAATGTTATCCAAAAGAGGAACCCAAGCATGTGCCTCAACCCAAACTGGTGCATATCCTGCCGATCCTCAAACGAAGACATGA

Coding sequence (CDS)

ATGGACTACTTAAGCAGATTGCTATCCCATCTGGAAACAAAAGGGGCTATCAAAGGGGTCTCCTTCAACAACTTTTGCAACATATCACACCTTCTTTTTGCGGACGATGTACTCATCTTTGTTGAAGACAATGAAAAGTATTTAAATAATTTACAGATGGCGCTCACCCTCTTTGAGAAAGCCTCTGGGCTGACTTTCAACAACTCAAAGTCAACAATAAGCCCCATAAACATATCTGCTGATAGAACAGAACAGATAGCTAGCTTCTTCGGGTTTCAAACTAAATTCCTTCCAGTCAACTACCTAGGAGTTCCGCTGGGAGGAAACCCAAGATCCAGATCTTTTTGGGGACAAACAATTGAATGTATCCACAAAAAACTAAATGGTTGGAAATACTCACAAATTTCCAAAGGAGGAAGGCTTACCCTTTTAAAAGCTTCTCTATCGAGCCTTCCCACCTATCAGCTCTCAACATTCAAAGCTCCTATCTCTGTATACAAAGAAATTGAAAAACATTGGAGAGATTTCTTGTGGGGAGGAAGTGAGGACAAACAAAATGCTCACCTAATAAACTGGAGCATCTGTACCTCCCCTAAGGAGTTAGGAGGCCTGGGAATTAGTAAGCTAAAGGACACAAACCAAGCCCTCCTATGCAAATGGCTATGGAGATACCACAATGAGTCAAACTCTCTTTGGAAAAAGTGTATAGATGCAAAATACACAAAAAACCATCAAGGAGACATTCCGGTGGTAGGCAGAAACAGTAGTGCAAATTCTCCTTGGAATGCAATCAAAAAATGGAAAGATTGGTTTGAATCAAAAATCAGCTGGATACCCAACGATGGCTCCTCCCTCTCCTTTTGGCACAGCAAGTGGCAAAACAATATCCCTCTGTCCCTACAAATTCCCAGACTTTATGCTCTCTCGAATATACAATCAGCTACTGTAAAGGAAGTTTGGGACCAAGGTTCTGATGAATGGAACATTAAACCAAGACGACCTTTAAATGAGAGGGAACAACAAATATGGGACTCCATCAAAATGAGTTTGCCTCGGGTTCACAACAACAGAGGGATGAGCAAGCCTTCTTGGAATCCAAGTGACAGCAATAAGTACACGGTGGCTTCAGCAAAAGATAATGCATTCAAGGAAACCTCAATTCCAAAGGAGACAAACTGGGAAAAGGAGCTGAAACACCTCTGGAGGTCTCACATTCCGCAAAAATGTAAATTCTTCATTTGGACCATGGTTCATCAGAAACTCAACACAATGTTATCCAAAAGAGGAACCCAAGCATGTGCCTCAACCCAAACTGGTGCATATCCTGCCGATCCTCAAACGAAGACATGA

Protein sequence

MDYLSRLLSHLETKGAIKGVSFNNFCNISHLLFADDVLIFVEDNEKYLNNLQMALTLFEKASGLTFNNSKSTISPINISADRTEQIASFFGFQTKFLPVNYLGVPLGGNPRSRSFWGQTIECIHKKLNGWKYSQISKGGRLTLLKASLSSLPTYQLSTFKAPISVYKEIEKHWRDFLWGGSEDKQNAHLINWSICTSPKELGGLGISKLKDTNQALLCKWLWRYHNESNSLWKKCIDAKYTKNHQGDIPVVGRNSSANSPWNAIKKWKDWFESKISWIPNDGSSLSFWHSKWQNNIPLSLQIPRLYALSNIQSATVKEVWDQGSDEWNIKPRRPLNEREQQIWDSIKMSLPRVHNNRGMSKPSWNPSDSNKYTVASAKDNAFKETSIPKETNWEKELKHLWRSHIPQKCKFFIWTMVHQKLNTMLSKRGTQACASTQTGAYPADPQTKT

Homology

[Close]

BLAST of IVF0003884 vs. ExPASy Swiss-Prot
Match: P0C2F6 (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.7e-36
Identity = 92/313 (29.39%), Postives = 154/313 (49.20%), Query Frame = 0


Query: 112 SRSFWGQTIECIHKKLNGWKYSQISKGGRLTLLKASLSSLPTYQLSTFKAPISVYKEIEK 171
           ++  +G+ +E +  +++GW+   +S  GRLTL KA LSS+P + +ST   P S+   +++
Sbjct: 9   NKDTFGEILERVSSRMSGWREKTLSFAGRLTLTKAVLSSMPVHSMSTILLPQSILNRLDQ 68

Query: 172 HWRDFLWGGSEDKQNAHLINWSICTSPKELGGLGISKLKDTNQALLCKWLWRYHNESNSL 231
             R FLWG + +K+  HL+ WS   SPK+ GGLG+   K  N+AL+ K  WR   E NSL
Sbjct: 69  LSRTFLWGSTAEKKKQHLVKWSKVCSPKKEGGLGVRAAKSMNRALISKVGWRLLQEKNSL 128

Query: 232 WKKCIDAKYTKNHQGDIPVVGRNSSANSPWNAIK-KWKDWFESKISWIPNDGSSLSFWHS 291
           W   +  KY      D   +    S +S W +I    +D     + WIP DG  + FW  
Sbjct: 129 WTLVLQKKYHVGEIRDSRWLIPKGSWSSTWRSIAIGLRDVVSHGVGWIPGDGQQIRFWTD 188

Query: 292 KWQNNIPLSLQIPRLYALSNIQSATVKEVWDQGSDEWNIKPRRPLNEREQQIWDSIKMSL 351
           +W +  PL L++      ++  +   K++W  G   W+     P      ++ +   + L
Sbjct: 189 RWVSGKPL-LELDNGERPTDCDTVVAKDLWIPGRG-WDFAKIDPYTTNNTRL-ELRAVVL 248

Query: 352 PRVHNNRGMSKPSWNPSDSNKYTVASAKDNAFKETSIPKETNWEKELKHLWRSHIPQKCK 411
             V   R   + SW  S   +++V SA +       +P+  N       LW+  +P++ K
Sbjct: 249 DLVTGAR--DRLSWKFSQDGQFSVRSAYE-MLTVDEVPR-PNMASFFNCLWKVRVPERVK 308

Query: 412 FFIWTMVHQKLNT 424
            F+W + +Q + T
Sbjct: 309 TFLWLVGNQAVMT 314

[Close]

BLAST of IVF0003884 vs. ExPASy Swiss-Prot
Match: O00370 (LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens OX=9606 PE=1 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 9.5e-11
Identity = 56/224 (25.00%), Postives = 95/224 (42.41%), Query Frame = 0


Query: 17  IKGVSFNNFCNISHLLFADDVLIFVEDNEKYLNNLQMALTLFEKASGLTFNNSKSTISPI 76
           IKG+       +   LFADD+++++E+      NL   ++ F K SG   N  KS     
Sbjct: 685 IKGIQLGKE-EVKLSLFADDMIVYLENPIVSAQNLLKLISNFSKVSGYKINVQKSQAFLY 744

Query: 77  NISADRTEQIASFFGFQTKFLPVNYLGVPLGGNPRS--RSFWGQTIECIHKKLNGWKYSQ 136
           N +     QI     F      + YLG+ L  + +   +  +   ++ I +  N WK   
Sbjct: 745 NNNRQTESQIMGELPFTIASKRIKYLGIQLTRDVKDLFKENYKPLLKEIKEDTNKWKNIP 804

Query: 137 ISKGGRLTLLKASLSSLPTYQLST--FKAPISVYKEIEKHWRDFLWGGSEDKQNAHLINW 196
            S  GR+ ++K ++     Y+ +    K P++ + E+EK    F+W      Q    I  
Sbjct: 805 CSWVGRINIVKMAILPKVIYRFNAIPIKLPMTFFTELEKTTLKFIW-----NQKRARIAK 864

Query: 197 SICTSPKELGGLGISKLKDTNQALLCK--WLWRYHNESNSLWKK 235
           SI +   + GG+ +   K   +A + K  W W Y N     W +
Sbjct: 865 SILSQKNKAGGITLPDFKLYYKATVTKTAWYW-YQNRDIDQWNR 901

[Close]

BLAST of IVF0003884 vs. ExPASy Swiss-Prot
Match: P93295 (Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana OX=3702 GN=AtMg00310 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 6.4e-07
Identity = 36/144 (25.00%), Postives = 64/144 (44.44%), Query Frame = 0


Query: 150 SLPTYQLSTFKAPISVYKEIEKHWRDFLWGGSEDKQNAHLINW-SICTSPKELGGLGISK 209
           +LP Y +S F+    + K++     +F W   E+K+    + W  +C S ++ GGLG   
Sbjct: 2   ALPVYAMSCFRLSKLLCKKLTSAMTEFWWSSCENKRKISWVAWQKLCKSKEDDGGLGFRD 61

Query: 210 LKDTNQALLCKWLWRYHNESNSLWKKCIDAKYTKNHQGDIPVVGRNSSANSPWNAIKKWK 269
           L   NQALL K  +R  ++ ++L  + + ++Y  +       VG   S    W +I   +
Sbjct: 62  LGWFNQALLAKQSFRIIHQPHTLLSRLLRSRYFPHSSMMECSVGTRPS--YAWRSIIHGR 121

Query: 270 DWFESKISWIPNDGSSLSFWHSKW 293
           +     +     DG     W  +W
Sbjct: 122 ELLSRGLLRTIGDGIHTKVWLDRW 143

[Close]

BLAST of IVF0003884 vs. ExPASy TrEMBL
Match: A0A5D3CA17 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1503G00050 PE=4 SV=1)

HSP 1 Score: 862.4 bits (2227), Expect = 8.1e-247
Identity = 402/424 (94.81%), Postives = 417/424 (98.35%), Query Frame = 0


Query: 1    MDYLSRLLSHLETKGAIKGVSFNNFCNISHLLFADDVLIFVEDNEKYLNNLQMALTLFEK 60
            MDYLSRLLSHLE+KGAIKGVSFNN+CNISHLLFADDVLIFVEDNE+YLNNLQMALTLFEK
Sbjct: 1261 MDYLSRLLSHLESKGAIKGVSFNNYCNISHLLFADDVLIFVEDNERYLNNLQMALTLFEK 1320

Query: 61   ASGLTFNNSKSTISPINISADRTEQIASFFGFQTKFLPVNYLGVPLGGNPRSRSFWGQTI 120
            ASGLTFNNSKSTISPINISA RT+QIASFFGFQTKFLPVNYLGVPLGGNPRSRSFW QTI
Sbjct: 1321 ASGLTFNNSKSTISPINISAGRTDQIASFFGFQTKFLPVNYLGVPLGGNPRSRSFWDQTI 1380

Query: 121  ECIHKKLNGWKYSQISKGGRLTLLKASLSSLPTYQLSTFKAPISVYKEIEKHWRDFLWGG 180
            ECIHKKLNGWKYSQISKGGRLTLLKASLSSLPTYQLSTFKAP+SVYKEIEKHWRDFLWGG
Sbjct: 1381 ECIHKKLNGWKYSQISKGGRLTLLKASLSSLPTYQLSTFKAPVSVYKEIEKHWRDFLWGG 1440

Query: 181  SEDKQNAHLINWSICTSPKELGGLGISKLKDTNQALLCKWLWRYHNESNSLWKKCIDAKY 240
            SEDKQNAHLINW+ICTSPKELGGLGISKLKDTNQALLCKWLWRYHNESNSLWKKCIDAKY
Sbjct: 1441 SEDKQNAHLINWNICTSPKELGGLGISKLKDTNQALLCKWLWRYHNESNSLWKKCIDAKY 1500

Query: 241  TKNHQGDIPVVGRNSSANSPWNAIKKWKDWFESKISWIPNDGSSLSFWHSKWQNNIPLSL 300
            TKNHQGDIPVVGRNSSANSPWNAIKKWKDW+ESKISW+PNDGSSLSFWHSKW NNIPLSL
Sbjct: 1501 TKNHQGDIPVVGRNSSANSPWNAIKKWKDWYESKISWLPNDGSSLSFWHSKWHNNIPLSL 1560

Query: 301  QIPRLYALSNIQSATVKEVWDQGSDEWNIKPRRPLNEREQQIWDSIKMSLPRVHNNRGMS 360
            QIPRLYALSN+QSATVKE+WDQGSD+WN+KPRRPLNEREQQ WDSIKMSLPR+HNNRGM 
Sbjct: 1561 QIPRLYALSNMQSATVKEIWDQGSDDWNMKPRRPLNEREQQTWDSIKMSLPRIHNNRGMC 1620

Query: 361  KPSWNPSDSNKYTVASAKDNAFKETSIPKETNWEKELKHLWRSHIPQKCKFFIWTMVHQK 420
            KP+WNPSDS KYTVASAKD AFKE+SIPKETNWEKELKHLWRSHIPQKCKFFIWTMVHQK
Sbjct: 1621 KPTWNPSDSKKYTVASAKDIAFKESSIPKETNWEKELKHLWRSHIPQKCKFFIWTMVHQK 1680

Query: 421  LNTM 425
            LNTM
Sbjct: 1681 LNTM 1684

[Close]

BLAST of IVF0003884 vs. ExPASy TrEMBL
Match: A0A5D3DZM5 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold303G00720 PE=4 SV=1)

HSP 1 Score: 862.4 bits (2227), Expect = 8.1e-247
Identity = 402/424 (94.81%), Postives = 417/424 (98.35%), Query Frame = 0


Query: 1   MDYLSRLLSHLETKGAIKGVSFNNFCNISHLLFADDVLIFVEDNEKYLNNLQMALTLFEK 60
           MDYLSRLLSHLE+KGAIKGVSFNN+CNISHLLFADDVLIFVEDNE+YLNNLQMALTLFEK
Sbjct: 129 MDYLSRLLSHLESKGAIKGVSFNNYCNISHLLFADDVLIFVEDNERYLNNLQMALTLFEK 188

Query: 61  ASGLTFNNSKSTISPINISADRTEQIASFFGFQTKFLPVNYLGVPLGGNPRSRSFWGQTI 120
           ASGLTFNNSKSTISPINISA RT+QIASFFGFQTKFLPVNYLGVPLGGNPRSRSFW QTI
Sbjct: 189 ASGLTFNNSKSTISPINISAGRTDQIASFFGFQTKFLPVNYLGVPLGGNPRSRSFWDQTI 248

Query: 121 ECIHKKLNGWKYSQISKGGRLTLLKASLSSLPTYQLSTFKAPISVYKEIEKHWRDFLWGG 180
           ECIHKKLNGWKYSQISKGGRLTLLKASLSSLPTYQLSTFKAP+SVYKEIEKHWRDFLWGG
Sbjct: 249 ECIHKKLNGWKYSQISKGGRLTLLKASLSSLPTYQLSTFKAPVSVYKEIEKHWRDFLWGG 308

Query: 181 SEDKQNAHLINWSICTSPKELGGLGISKLKDTNQALLCKWLWRYHNESNSLWKKCIDAKY 240
           SEDKQNAHLINW+ICTSPKELGG+GISKLKDTNQALLCKWLWRYHNESNSLWKKCIDAKY
Sbjct: 309 SEDKQNAHLINWNICTSPKELGGMGISKLKDTNQALLCKWLWRYHNESNSLWKKCIDAKY 368

Query: 241 TKNHQGDIPVVGRNSSANSPWNAIKKWKDWFESKISWIPNDGSSLSFWHSKWQNNIPLSL 300
           TKNHQGDIPVVGRNSSANSPWNAIKKWKDW+ESKISWIPNDGSSLSFWHSKW NNIPLSL
Sbjct: 369 TKNHQGDIPVVGRNSSANSPWNAIKKWKDWYESKISWIPNDGSSLSFWHSKWHNNIPLSL 428

Query: 301 QIPRLYALSNIQSATVKEVWDQGSDEWNIKPRRPLNEREQQIWDSIKMSLPRVHNNRGMS 360
           QIPRLYALSN+QSATVKE+WDQGSD+WN+KPRRPLNEREQQ WDSIKMSLPR+HNNRGM 
Sbjct: 429 QIPRLYALSNMQSATVKEIWDQGSDDWNMKPRRPLNEREQQTWDSIKMSLPRIHNNRGMC 488

Query: 361 KPSWNPSDSNKYTVASAKDNAFKETSIPKETNWEKELKHLWRSHIPQKCKFFIWTMVHQK 420
           KP+WNPSDS KYTVASAKD AFKE+SIPKETNWEKELKHLWRSHIPQKCKFFIWTMVHQK
Sbjct: 489 KPTWNPSDSKKYTVASAKDIAFKESSIPKETNWEKELKHLWRSHIPQKCKFFIWTMVHQK 548

Query: 421 LNTM 425
           LNTM
Sbjct: 549 LNTM 552

[Close]

BLAST of IVF0003884 vs. ExPASy TrEMBL
Match: A0A5A7US62 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold280G003960 PE=4 SV=1)

HSP 1 Score: 860.5 bits (2222), Expect = 3.1e-246
Identity = 402/424 (94.81%), Postives = 416/424 (98.11%), Query Frame = 0


Query: 1    MDYLSRLLSHLETKGAIKGVSFNNFCNISHLLFADDVLIFVEDNEKYLNNLQMALTLFEK 60
            MDYLSRLLSHLE+KGAIKGVSFNN CNISHLLFADDVLIFVEDNE+YLNNLQMALTLFEK
Sbjct: 1261 MDYLSRLLSHLESKGAIKGVSFNNCCNISHLLFADDVLIFVEDNERYLNNLQMALTLFEK 1320

Query: 61   ASGLTFNNSKSTISPINISADRTEQIASFFGFQTKFLPVNYLGVPLGGNPRSRSFWGQTI 120
            ASGLTFNNSKSTISPINISA RT+QIASFFGFQTKFLPVNYLGVPLGGNPRSRSFW QTI
Sbjct: 1321 ASGLTFNNSKSTISPINISAGRTDQIASFFGFQTKFLPVNYLGVPLGGNPRSRSFWDQTI 1380

Query: 121  ECIHKKLNGWKYSQISKGGRLTLLKASLSSLPTYQLSTFKAPISVYKEIEKHWRDFLWGG 180
            ECIHKKLNGWKYSQISKGGRLTLLKASLSSLPTYQLSTFKAP+SVYKEIEKHWRDFLWGG
Sbjct: 1381 ECIHKKLNGWKYSQISKGGRLTLLKASLSSLPTYQLSTFKAPVSVYKEIEKHWRDFLWGG 1440

Query: 181  SEDKQNAHLINWSICTSPKELGGLGISKLKDTNQALLCKWLWRYHNESNSLWKKCIDAKY 240
            SEDKQNAHLINW+ICTSPKELGGLGISKLKDTNQALLCKWLWRYHNESNSLWKKCIDAKY
Sbjct: 1441 SEDKQNAHLINWNICTSPKELGGLGISKLKDTNQALLCKWLWRYHNESNSLWKKCIDAKY 1500

Query: 241  TKNHQGDIPVVGRNSSANSPWNAIKKWKDWFESKISWIPNDGSSLSFWHSKWQNNIPLSL 300
            TKNHQGDIPVVGRNSSANSPWNAIKKWKDW+ESKISW+PNDGSSLSFWHSKW NNIPLSL
Sbjct: 1501 TKNHQGDIPVVGRNSSANSPWNAIKKWKDWYESKISWLPNDGSSLSFWHSKWHNNIPLSL 1560

Query: 301  QIPRLYALSNIQSATVKEVWDQGSDEWNIKPRRPLNEREQQIWDSIKMSLPRVHNNRGMS 360
            QIPRLYALSN+QSATVKE+WDQGSD+WN+KPRRPLNEREQQ WDSIKMSLPR+HNNRGM 
Sbjct: 1561 QIPRLYALSNMQSATVKEIWDQGSDDWNMKPRRPLNEREQQTWDSIKMSLPRIHNNRGMC 1620

Query: 361  KPSWNPSDSNKYTVASAKDNAFKETSIPKETNWEKELKHLWRSHIPQKCKFFIWTMVHQK 420
            KP+WNPSDS KYTVASAKD AFKE+SIPKETNWEKELKHLWRSHIPQKCKFFIWTMVHQK
Sbjct: 1621 KPTWNPSDSKKYTVASAKDIAFKESSIPKETNWEKELKHLWRSHIPQKCKFFIWTMVHQK 1680

Query: 421  LNTM 425
            LNTM
Sbjct: 1681 LNTM 1684

[Close]

BLAST of IVF0003884 vs. ExPASy TrEMBL
Match: A0A5A7TQA8 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G00190 PE=4 SV=1)

HSP 1 Score: 860.5 bits (2222), Expect = 3.1e-246
Identity = 402/424 (94.81%), Postives = 416/424 (98.11%), Query Frame = 0


Query: 1   MDYLSRLLSHLETKGAIKGVSFNNFCNISHLLFADDVLIFVEDNEKYLNNLQMALTLFEK 60
           MDYLSRLLSHLE+KGAIKGVSFNN CNISHLLFADDVLIFVEDNE+YLNNLQMALTLFEK
Sbjct: 129 MDYLSRLLSHLESKGAIKGVSFNNCCNISHLLFADDVLIFVEDNERYLNNLQMALTLFEK 188

Query: 61  ASGLTFNNSKSTISPINISADRTEQIASFFGFQTKFLPVNYLGVPLGGNPRSRSFWGQTI 120
           ASGLTFNNSKSTISPINISA RT+QIASFFGFQTKFLPVNYLGVPLGGNPRSRSFW QTI
Sbjct: 189 ASGLTFNNSKSTISPINISAGRTDQIASFFGFQTKFLPVNYLGVPLGGNPRSRSFWDQTI 248

Query: 121 ECIHKKLNGWKYSQISKGGRLTLLKASLSSLPTYQLSTFKAPISVYKEIEKHWRDFLWGG 180
           ECIHKKLNGWKYSQISKGGRLTLLKASLSSLPTYQLSTFKAP+SVYKEIEKHWRDFLWGG
Sbjct: 249 ECIHKKLNGWKYSQISKGGRLTLLKASLSSLPTYQLSTFKAPVSVYKEIEKHWRDFLWGG 308

Query: 181 SEDKQNAHLINWSICTSPKELGGLGISKLKDTNQALLCKWLWRYHNESNSLWKKCIDAKY 240
           SEDKQNAHLINW+ICTSPKELGG+GISKLKDTNQALLCKWLWRYHNESNSLWKKCIDAKY
Sbjct: 309 SEDKQNAHLINWNICTSPKELGGMGISKLKDTNQALLCKWLWRYHNESNSLWKKCIDAKY 368

Query: 241 TKNHQGDIPVVGRNSSANSPWNAIKKWKDWFESKISWIPNDGSSLSFWHSKWQNNIPLSL 300
           TKNHQGDIPVVGRNSSANSPWNAIKKWKDW+ESKISWIPNDGSSLSFWHSKW NNIPLSL
Sbjct: 369 TKNHQGDIPVVGRNSSANSPWNAIKKWKDWYESKISWIPNDGSSLSFWHSKWHNNIPLSL 428

Query: 301 QIPRLYALSNIQSATVKEVWDQGSDEWNIKPRRPLNEREQQIWDSIKMSLPRVHNNRGMS 360
           QIPRLYALSN+QSATVKE+WDQGSD+WN+KPRRPLNEREQQ WDSIKMSLPR+HNNRGM 
Sbjct: 429 QIPRLYALSNMQSATVKEIWDQGSDDWNMKPRRPLNEREQQTWDSIKMSLPRIHNNRGMC 488

Query: 361 KPSWNPSDSNKYTVASAKDNAFKETSIPKETNWEKELKHLWRSHIPQKCKFFIWTMVHQK 420
           KP+WNPSDS KYTVASAKD AFKE+SIPKETNWEKELKHLWRSHIPQKCKFFIWTMVHQK
Sbjct: 489 KPTWNPSDSKKYTVASAKDIAFKESSIPKETNWEKELKHLWRSHIPQKCKFFIWTMVHQK 548

Query: 421 LNTM 425
           LNTM
Sbjct: 549 LNTM 552

[Close]

BLAST of IVF0003884 vs. ExPASy TrEMBL
Match: A0A5A7UTI6 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005580 PE=4 SV=1)

HSP 1 Score: 856.3 bits (2211), Expect = 5.8e-245
Identity = 399/424 (94.10%), Postives = 415/424 (97.88%), Query Frame = 0


Query: 1   MDYLSRLLSHLETKGAIKGVSFNNFCNISHLLFADDVLIFVEDNEKYLNNLQMALTLFEK 60
           MDYLSRLLSHLE+KGAIKGVSFNN+CNISHLLFADDVLIFVEDNE+YLNNLQMALTLFEK
Sbjct: 208 MDYLSRLLSHLESKGAIKGVSFNNYCNISHLLFADDVLIFVEDNERYLNNLQMALTLFEK 267

Query: 61  ASGLTFNNSKSTISPINISADRTEQIASFFGFQTKFLPVNYLGVPLGGNPRSRSFWGQTI 120
           ASGLTFNNSKSTISPINISA RT+QIASFFGFQTKFLPVNYLGVPLGGNPRSRSFW QTI
Sbjct: 268 ASGLTFNNSKSTISPINISAGRTDQIASFFGFQTKFLPVNYLGVPLGGNPRSRSFWSQTI 327

Query: 121 ECIHKKLNGWKYSQISKGGRLTLLKASLSSLPTYQLSTFKAPISVYKEIEKHWRDFLWGG 180
           ECIHKKLNGWKYSQISKGGRLTLLKASLSSLPTYQLSTFKAP+SVYKEIEKHWRDFLWGG
Sbjct: 328 ECIHKKLNGWKYSQISKGGRLTLLKASLSSLPTYQLSTFKAPVSVYKEIEKHWRDFLWGG 387

Query: 181 SEDKQNAHLINWSICTSPKELGGLGISKLKDTNQALLCKWLWRYHNESNSLWKKCIDAKY 240
           SEDKQNAHLINW+ICTSPKELGGLGISK+KDTNQALLCKWLWRYHNESNSLWKKCIDAKY
Sbjct: 388 SEDKQNAHLINWNICTSPKELGGLGISKVKDTNQALLCKWLWRYHNESNSLWKKCIDAKY 447

Query: 241 TKNHQGDIPVVGRNSSANSPWNAIKKWKDWFESKISWIPNDGSSLSFWHSKWQNNIPLSL 300
           TKNHQGDIPVVGRNSSANSPWNAIKKWKDW+ESKISW+ NDGSSLSFWHSKW NNIPLSL
Sbjct: 448 TKNHQGDIPVVGRNSSANSPWNAIKKWKDWYESKISWMANDGSSLSFWHSKWHNNIPLSL 507

Query: 301 QIPRLYALSNIQSATVKEVWDQGSDEWNIKPRRPLNEREQQIWDSIKMSLPRVHNNRGMS 360
           Q PRLYALSN+QSATVKE+WDQGSD+WN++PRRPLNEREQQ WDSIKMSLPR+HNNRGM 
Sbjct: 508 QFPRLYALSNMQSATVKEIWDQGSDDWNMEPRRPLNEREQQTWDSIKMSLPRIHNNRGMC 567

Query: 361 KPSWNPSDSNKYTVASAKDNAFKETSIPKETNWEKELKHLWRSHIPQKCKFFIWTMVHQK 420
           KPSWNPSDS KYTVASAKD AFKE+SIPKETNWEKELKHLWRSHIPQKCKFFIWTMVHQK
Sbjct: 568 KPSWNPSDSKKYTVASAKDIAFKESSIPKETNWEKELKHLWRSHIPQKCKFFIWTMVHQK 627

Query: 421 LNTM 425
           LNTM
Sbjct: 628 LNTM 631

[Close]

BLAST of IVF0003884 vs. NCBI nr
Match: TYK28859.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 860 bits (2222), Expect = 1.32e-310
Identity = 402/424 (94.81%), Postives = 417/424 (98.35%), Query Frame = 0


Query: 1   MDYLSRLLSHLETKGAIKGVSFNNFCNISHLLFADDVLIFVEDNEKYLNNLQMALTLFEK 60
           MDYLSRLLSHLE+KGAIKGVSFNN+CNISHLLFADDVLIFVEDNE+YLNNLQMALTLFEK
Sbjct: 129 MDYLSRLLSHLESKGAIKGVSFNNYCNISHLLFADDVLIFVEDNERYLNNLQMALTLFEK 188

Query: 61  ASGLTFNNSKSTISPINISADRTEQIASFFGFQTKFLPVNYLGVPLGGNPRSRSFWGQTI 120
           ASGLTFNNSKSTISPINISA RT+QIASFFGFQTKFLPVNYLGVPLGGNPRSRSFW QTI
Sbjct: 189 ASGLTFNNSKSTISPINISAGRTDQIASFFGFQTKFLPVNYLGVPLGGNPRSRSFWDQTI 248

Query: 121 ECIHKKLNGWKYSQISKGGRLTLLKASLSSLPTYQLSTFKAPISVYKEIEKHWRDFLWGG 180
           ECIHKKLNGWKYSQISKGGRLTLLKASLSSLPTYQLSTFKAP+SVYKEIEKHWRDFLWGG
Sbjct: 249 ECIHKKLNGWKYSQISKGGRLTLLKASLSSLPTYQLSTFKAPVSVYKEIEKHWRDFLWGG 308

Query: 181 SEDKQNAHLINWSICTSPKELGGLGISKLKDTNQALLCKWLWRYHNESNSLWKKCIDAKY 240
           SEDKQNAHLINW+ICTSPKELGG+GISKLKDTNQALLCKWLWRYHNESNSLWKKCIDAKY
Sbjct: 309 SEDKQNAHLINWNICTSPKELGGMGISKLKDTNQALLCKWLWRYHNESNSLWKKCIDAKY 368

Query: 241 TKNHQGDIPVVGRNSSANSPWNAIKKWKDWFESKISWIPNDGSSLSFWHSKWQNNIPLSL 300
           TKNHQGDIPVVGRNSSANSPWNAIKKWKDW+ESKISWIPNDGSSLSFWHSKW NNIPLSL
Sbjct: 369 TKNHQGDIPVVGRNSSANSPWNAIKKWKDWYESKISWIPNDGSSLSFWHSKWHNNIPLSL 428

Query: 301 QIPRLYALSNIQSATVKEVWDQGSDEWNIKPRRPLNEREQQIWDSIKMSLPRVHNNRGMS 360
           QIPRLYALSN+QSATVKE+WDQGSD+WN+KPRRPLNEREQQ WDSIKMSLPR+HNNRGM 
Sbjct: 429 QIPRLYALSNMQSATVKEIWDQGSDDWNMKPRRPLNEREQQTWDSIKMSLPRIHNNRGMC 488

Query: 361 KPSWNPSDSNKYTVASAKDNAFKETSIPKETNWEKELKHLWRSHIPQKCKFFIWTMVHQK 420
           KP+WNPSDS KYTVASAKD AFKE+SIPKETNWEKELKHLWRSHIPQKCKFFIWTMVHQK
Sbjct: 489 KPTWNPSDSKKYTVASAKDIAFKESSIPKETNWEKELKHLWRSHIPQKCKFFIWTMVHQK 548

Query: 421 LNTM 424
           LNTM
Sbjct: 549 LNTM 552

[Close]

BLAST of IVF0003884 vs. NCBI nr
Match: KAA0045532.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 858 bits (2217), Expect = 7.58e-310
Identity = 402/424 (94.81%), Postives = 416/424 (98.11%), Query Frame = 0


Query: 1   MDYLSRLLSHLETKGAIKGVSFNNFCNISHLLFADDVLIFVEDNEKYLNNLQMALTLFEK 60
           MDYLSRLLSHLE+KGAIKGVSFNN CNISHLLFADDVLIFVEDNE+YLNNLQMALTLFEK
Sbjct: 129 MDYLSRLLSHLESKGAIKGVSFNNCCNISHLLFADDVLIFVEDNERYLNNLQMALTLFEK 188

Query: 61  ASGLTFNNSKSTISPINISADRTEQIASFFGFQTKFLPVNYLGVPLGGNPRSRSFWGQTI 120
           ASGLTFNNSKSTISPINISA RT+QIASFFGFQTKFLPVNYLGVPLGGNPRSRSFW QTI
Sbjct: 189 ASGLTFNNSKSTISPINISAGRTDQIASFFGFQTKFLPVNYLGVPLGGNPRSRSFWDQTI 248

Query: 121 ECIHKKLNGWKYSQISKGGRLTLLKASLSSLPTYQLSTFKAPISVYKEIEKHWRDFLWGG 180
           ECIHKKLNGWKYSQISKGGRLTLLKASLSSLPTYQLSTFKAP+SVYKEIEKHWRDFLWGG
Sbjct: 249 ECIHKKLNGWKYSQISKGGRLTLLKASLSSLPTYQLSTFKAPVSVYKEIEKHWRDFLWGG 308

Query: 181 SEDKQNAHLINWSICTSPKELGGLGISKLKDTNQALLCKWLWRYHNESNSLWKKCIDAKY 240
           SEDKQNAHLINW+ICTSPKELGG+GISKLKDTNQALLCKWLWRYHNESNSLWKKCIDAKY
Sbjct: 309 SEDKQNAHLINWNICTSPKELGGMGISKLKDTNQALLCKWLWRYHNESNSLWKKCIDAKY 368

Query: 241 TKNHQGDIPVVGRNSSANSPWNAIKKWKDWFESKISWIPNDGSSLSFWHSKWQNNIPLSL 300
           TKNHQGDIPVVGRNSSANSPWNAIKKWKDW+ESKISWIPNDGSSLSFWHSKW NNIPLSL
Sbjct: 369 TKNHQGDIPVVGRNSSANSPWNAIKKWKDWYESKISWIPNDGSSLSFWHSKWHNNIPLSL 428

Query: 301 QIPRLYALSNIQSATVKEVWDQGSDEWNIKPRRPLNEREQQIWDSIKMSLPRVHNNRGMS 360
           QIPRLYALSN+QSATVKE+WDQGSD+WN+KPRRPLNEREQQ WDSIKMSLPR+HNNRGM 
Sbjct: 429 QIPRLYALSNMQSATVKEIWDQGSDDWNMKPRRPLNEREQQTWDSIKMSLPRIHNNRGMC 488

Query: 361 KPSWNPSDSNKYTVASAKDNAFKETSIPKETNWEKELKHLWRSHIPQKCKFFIWTMVHQK 420
           KP+WNPSDS KYTVASAKD AFKE+SIPKETNWEKELKHLWRSHIPQKCKFFIWTMVHQK
Sbjct: 489 KPTWNPSDSKKYTVASAKDIAFKESSIPKETNWEKELKHLWRSHIPQKCKFFIWTMVHQK 548

Query: 421 LNTM 424
           LNTM
Sbjct: 549 LNTM 552

[Close]

BLAST of IVF0003884 vs. NCBI nr
Match: KAA0056839.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYJ99342.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 854 bits (2206), Expect = 1.44e-306
Identity = 399/424 (94.10%), Postives = 415/424 (97.88%), Query Frame = 0


Query: 1   MDYLSRLLSHLETKGAIKGVSFNNFCNISHLLFADDVLIFVEDNEKYLNNLQMALTLFEK 60
           MDYLSRLLSHLE+KGAIKGVSFNN+CNISHLLFADDVLIFVEDNE+YLNNLQMALTLFEK
Sbjct: 208 MDYLSRLLSHLESKGAIKGVSFNNYCNISHLLFADDVLIFVEDNERYLNNLQMALTLFEK 267

Query: 61  ASGLTFNNSKSTISPINISADRTEQIASFFGFQTKFLPVNYLGVPLGGNPRSRSFWGQTI 120
           ASGLTFNNSKSTISPINISA RT+QIASFFGFQTKFLPVNYLGVPLGGNPRSRSFW QTI
Sbjct: 268 ASGLTFNNSKSTISPINISAGRTDQIASFFGFQTKFLPVNYLGVPLGGNPRSRSFWSQTI 327

Query: 121 ECIHKKLNGWKYSQISKGGRLTLLKASLSSLPTYQLSTFKAPISVYKEIEKHWRDFLWGG 180
           ECIHKKLNGWKYSQISKGGRLTLLKASLSSLPTYQLSTFKAP+SVYKEIEKHWRDFLWGG
Sbjct: 328 ECIHKKLNGWKYSQISKGGRLTLLKASLSSLPTYQLSTFKAPVSVYKEIEKHWRDFLWGG 387

Query: 181 SEDKQNAHLINWSICTSPKELGGLGISKLKDTNQALLCKWLWRYHNESNSLWKKCIDAKY 240
           SEDKQNAHLINW+ICTSPKELGGLGISK+KDTNQALLCKWLWRYHNESNSLWKKCIDAKY
Sbjct: 388 SEDKQNAHLINWNICTSPKELGGLGISKVKDTNQALLCKWLWRYHNESNSLWKKCIDAKY 447

Query: 241 TKNHQGDIPVVGRNSSANSPWNAIKKWKDWFESKISWIPNDGSSLSFWHSKWQNNIPLSL 300
           TKNHQGDIPVVGRNSSANSPWNAIKKWKDW+ESKISW+ NDGSSLSFWHSKW NNIPLSL
Sbjct: 448 TKNHQGDIPVVGRNSSANSPWNAIKKWKDWYESKISWMANDGSSLSFWHSKWHNNIPLSL 507

Query: 301 QIPRLYALSNIQSATVKEVWDQGSDEWNIKPRRPLNEREQQIWDSIKMSLPRVHNNRGMS 360
           Q PRLYALSN+QSATVKE+WDQGSD+WN++PRRPLNEREQQ WDSIKMSLPR+HNNRGM 
Sbjct: 508 QFPRLYALSNMQSATVKEIWDQGSDDWNMEPRRPLNEREQQTWDSIKMSLPRIHNNRGMC 567

Query: 361 KPSWNPSDSNKYTVASAKDNAFKETSIPKETNWEKELKHLWRSHIPQKCKFFIWTMVHQK 420
           KPSWNPSDS KYTVASAKD AFKE+SIPKETNWEKELKHLWRSHIPQKCKFFIWTMVHQK
Sbjct: 568 KPSWNPSDSKKYTVASAKDIAFKESSIPKETNWEKELKHLWRSHIPQKCKFFIWTMVHQK 627

Query: 421 LNTM 424
           LNTM
Sbjct: 628 LNTM 631

[Close]

BLAST of IVF0003884 vs. NCBI nr
Match: TYK08190.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 860 bits (2222), Expect = 4.17e-295
Identity = 402/424 (94.81%), Postives = 417/424 (98.35%), Query Frame = 0


Query: 1    MDYLSRLLSHLETKGAIKGVSFNNFCNISHLLFADDVLIFVEDNEKYLNNLQMALTLFEK 60
            MDYLSRLLSHLE+KGAIKGVSFNN+CNISHLLFADDVLIFVEDNE+YLNNLQMALTLFEK
Sbjct: 1261 MDYLSRLLSHLESKGAIKGVSFNNYCNISHLLFADDVLIFVEDNERYLNNLQMALTLFEK 1320

Query: 61   ASGLTFNNSKSTISPINISADRTEQIASFFGFQTKFLPVNYLGVPLGGNPRSRSFWGQTI 120
            ASGLTFNNSKSTISPINISA RT+QIASFFGFQTKFLPVNYLGVPLGGNPRSRSFW QTI
Sbjct: 1321 ASGLTFNNSKSTISPINISAGRTDQIASFFGFQTKFLPVNYLGVPLGGNPRSRSFWDQTI 1380

Query: 121  ECIHKKLNGWKYSQISKGGRLTLLKASLSSLPTYQLSTFKAPISVYKEIEKHWRDFLWGG 180
            ECIHKKLNGWKYSQISKGGRLTLLKASLSSLPTYQLSTFKAP+SVYKEIEKHWRDFLWGG
Sbjct: 1381 ECIHKKLNGWKYSQISKGGRLTLLKASLSSLPTYQLSTFKAPVSVYKEIEKHWRDFLWGG 1440

Query: 181  SEDKQNAHLINWSICTSPKELGGLGISKLKDTNQALLCKWLWRYHNESNSLWKKCIDAKY 240
            SEDKQNAHLINW+ICTSPKELGGLGISKLKDTNQALLCKWLWRYHNESNSLWKKCIDAKY
Sbjct: 1441 SEDKQNAHLINWNICTSPKELGGLGISKLKDTNQALLCKWLWRYHNESNSLWKKCIDAKY 1500

Query: 241  TKNHQGDIPVVGRNSSANSPWNAIKKWKDWFESKISWIPNDGSSLSFWHSKWQNNIPLSL 300
            TKNHQGDIPVVGRNSSANSPWNAIKKWKDW+ESKISW+PNDGSSLSFWHSKW NNIPLSL
Sbjct: 1501 TKNHQGDIPVVGRNSSANSPWNAIKKWKDWYESKISWLPNDGSSLSFWHSKWHNNIPLSL 1560

Query: 301  QIPRLYALSNIQSATVKEVWDQGSDEWNIKPRRPLNEREQQIWDSIKMSLPRVHNNRGMS 360
            QIPRLYALSN+QSATVKE+WDQGSD+WN+KPRRPLNEREQQ WDSIKMSLPR+HNNRGM 
Sbjct: 1561 QIPRLYALSNMQSATVKEIWDQGSDDWNMKPRRPLNEREQQTWDSIKMSLPRIHNNRGMC 1620

Query: 361  KPSWNPSDSNKYTVASAKDNAFKETSIPKETNWEKELKHLWRSHIPQKCKFFIWTMVHQK 420
            KP+WNPSDS KYTVASAKD AFKE+SIPKETNWEKELKHLWRSHIPQKCKFFIWTMVHQK
Sbjct: 1621 KPTWNPSDSKKYTVASAKDIAFKESSIPKETNWEKELKHLWRSHIPQKCKFFIWTMVHQK 1680

Query: 421  LNTM 424
            LNTM
Sbjct: 1681 LNTM 1684

[Close]

BLAST of IVF0003884 vs. NCBI nr
Match: KAA0057507.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 858 bits (2217), Expect = 2.32e-294
Identity = 402/424 (94.81%), Postives = 416/424 (98.11%), Query Frame = 0


Query: 1    MDYLSRLLSHLETKGAIKGVSFNNFCNISHLLFADDVLIFVEDNEKYLNNLQMALTLFEK 60
            MDYLSRLLSHLE+KGAIKGVSFNN CNISHLLFADDVLIFVEDNE+YLNNLQMALTLFEK
Sbjct: 1261 MDYLSRLLSHLESKGAIKGVSFNNCCNISHLLFADDVLIFVEDNERYLNNLQMALTLFEK 1320

Query: 61   ASGLTFNNSKSTISPINISADRTEQIASFFGFQTKFLPVNYLGVPLGGNPRSRSFWGQTI 120
            ASGLTFNNSKSTISPINISA RT+QIASFFGFQTKFLPVNYLGVPLGGNPRSRSFW QTI
Sbjct: 1321 ASGLTFNNSKSTISPINISAGRTDQIASFFGFQTKFLPVNYLGVPLGGNPRSRSFWDQTI 1380

Query: 121  ECIHKKLNGWKYSQISKGGRLTLLKASLSSLPTYQLSTFKAPISVYKEIEKHWRDFLWGG 180
            ECIHKKLNGWKYSQISKGGRLTLLKASLSSLPTYQLSTFKAP+SVYKEIEKHWRDFLWGG
Sbjct: 1381 ECIHKKLNGWKYSQISKGGRLTLLKASLSSLPTYQLSTFKAPVSVYKEIEKHWRDFLWGG 1440

Query: 181  SEDKQNAHLINWSICTSPKELGGLGISKLKDTNQALLCKWLWRYHNESNSLWKKCIDAKY 240
            SEDKQNAHLINW+ICTSPKELGGLGISKLKDTNQALLCKWLWRYHNESNSLWKKCIDAKY
Sbjct: 1441 SEDKQNAHLINWNICTSPKELGGLGISKLKDTNQALLCKWLWRYHNESNSLWKKCIDAKY 1500

Query: 241  TKNHQGDIPVVGRNSSANSPWNAIKKWKDWFESKISWIPNDGSSLSFWHSKWQNNIPLSL 300
            TKNHQGDIPVVGRNSSANSPWNAIKKWKDW+ESKISW+PNDGSSLSFWHSKW NNIPLSL
Sbjct: 1501 TKNHQGDIPVVGRNSSANSPWNAIKKWKDWYESKISWLPNDGSSLSFWHSKWHNNIPLSL 1560

Query: 301  QIPRLYALSNIQSATVKEVWDQGSDEWNIKPRRPLNEREQQIWDSIKMSLPRVHNNRGMS 360
            QIPRLYALSN+QSATVKE+WDQGSD+WN+KPRRPLNEREQQ WDSIKMSLPR+HNNRGM 
Sbjct: 1561 QIPRLYALSNMQSATVKEIWDQGSDDWNMKPRRPLNEREQQTWDSIKMSLPRIHNNRGMC 1620

Query: 361  KPSWNPSDSNKYTVASAKDNAFKETSIPKETNWEKELKHLWRSHIPQKCKFFIWTMVHQK 420
            KP+WNPSDS KYTVASAKD AFKE+SIPKETNWEKELKHLWRSHIPQKCKFFIWTMVHQK
Sbjct: 1621 KPTWNPSDSKKYTVASAKDIAFKESSIPKETNWEKELKHLWRSHIPQKCKFFIWTMVHQK 1680

Query: 421  LNTM 424
            LNTM
Sbjct: 1681 LNTM 1684

[Close]

BLAST of IVF0003884 vs. TAIR 10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 81.3 bits (199), Expect = 2.2e-15
Identity = 71/295 (24.07%), Postives = 116/295 (39.32%), Query Frame = 0


Query: 150 SLPTYQLSTFKAPISVYKEIEKHWRDFLWGGSEDKQNAHLINWSICTSPKELGGLGISKL 209
           +LPTY ++ F  P +V K+I     DF W   ++ +  H   W   +  K  GG+G   +
Sbjct: 2   ALPTYTMACFLLPKTVCKQIISVLADFWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKDI 61

Query: 210 KDTNQALLCKWLWRYHNESNSLWKKCIDAKYTKNHQGDIPVVGRNSSANSPWNAIKKWKD 269
           +  N ALL K +WR  +   SL  K   ++Y   H+ D       S  +  W +I   ++
Sbjct: 62  EAFNLALLGKQMWRMLSRPESLMAKVFKSRYF--HKSDPLNAPLGSRPSFVWKSIHASQE 121

Query: 270 WFESKISWIPNDGSSLSFWHSKWQNNIPLSLQI------PRLYALSNIQSATVKEVWDQG 329
                   +  +G  +  W  KW ++ P S  +      P+ YA S      V ++ D+ 
Sbjct: 122 ILRQGARAVVGNGEDIIIWRHKWLDSKPASAALRMQRVPPQEYA-SVSSILKVSDLIDES 181

Query: 330 SDEWNIKPRRPLNEREQQIWDSIKMSLPRVH----------NNRGMSKPSWNPSDSNKYT 389
             EW                D I+M  P V             R +   +W+ + S  YT
Sbjct: 182 GREWR--------------KDVIEMLFPEVERKLIGELRPGGRRILDSYTWDYTSSGDYT 241

Query: 390 VAS---AKDNAFKETSIPKETNWEKEL----KHLWRSHIPQKCKFFIWTMVHQKL 422
           V S          + S P+E + E  L    + +W+S    K + F+W  +   L
Sbjct: 242 VKSGYWVLTQIINKRSSPQEVS-EPSLNPIYQKIWKSQTSPKIQHFLWKCLSNSL 278

[Close]

BLAST of IVF0003884 vs. TAIR 10
Match: ATMG00310.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 57.0 bits (136), Expect = 4.5e-08
Identity = 36/144 (25.00%), Postives = 64/144 (44.44%), Query Frame = 0


Query: 150 SLPTYQLSTFKAPISVYKEIEKHWRDFLWGGSEDKQNAHLINW-SICTSPKELGGLGISK 209
           +LP Y +S F+    + K++     +F W   E+K+    + W  +C S ++ GGLG   
Sbjct: 2   ALPVYAMSCFRLSKLLCKKLTSAMTEFWWSSCENKRKISWVAWQKLCKSKEDDGGLGFRD 61

Query: 210 LKDTNQALLCKWLWRYHNESNSLWKKCIDAKYTKNHQGDIPVVGRNSSANSPWNAIKKWK 269
           L   NQALL K  +R  ++ ++L  + + ++Y  +       VG   S    W +I   +
Sbjct: 62  LGWFNQALLAKQSFRIIHQPHTLLSRLLRSRYFPHSSMMECSVGTRPS--YAWRSIIHGR 121

Query: 270 DWFESKISWIPNDGSSLSFWHSKW 293
           +     +     DG     W  +W
Sbjct: 122 ELLSRGLLRTIGDGIHTKVWLDRW 143

The following BLAST results are available for this feature:

BLAST of IVF0003884 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0C2F6	1.7e-36	29.39	Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1...	[more]
O00370	9.5e-11	25.00	LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens OX=9606 PE=1 SV=1	[more]
P93295	6.4e-07	25.00	Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of IVF0003884 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CA17	8.1e-247	94.81	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5D3DZM5	8.1e-247	94.81	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7US62	3.1e-246	94.81	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7TQA8	3.1e-246	94.81	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7UTI6	5.8e-245	94.10	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]

BLAST of IVF0003884 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK28859.1	1.32e-310	94.81	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
KAA0045532.1	7.58e-310	94.81	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
KAA0056839.1	1.44e-306	94.10	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYJ993...	[more]
TYK08190.1	4.17e-295	94.81	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
KAA0057507.1	2.32e-294	94.81	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0003884 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G29090.1	2.2e-15	24.07	Ribonuclease H-like superfamily protein	[more]
ATMG00310.1	4.5e-08	25.00	RNA-directed DNA polymerase (reverse transcriptase)-related family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 26..106 e-value: 1.8E-7 score: 30.9
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 1..94 score: 9.2241
None	No IPR available	PANTHER	PTHR33116	REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED	coord: 13..401
None	No IPR available	PANTHER	PTHR33116:SF33	OS01G0885550 PROTEIN	coord: 13..401

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0003884.2	IVF0003884.2	mRNA