IVF0003835 (gene) Melon (IVF77) v1

Overview


Name	IVF0003835
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	PMD domain-containing protein
Location	chr10: 20514271 .. 20514671 (-)
RNA-Seq Expression	IVF0003835
Synteny	IVF0003835

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGCATGGGACCTATTTTGAGGATAACAGACACCATTTGGTGAGTAATGCCATTCCTCCTCCTTCACAGCCTAGACTACCCAAGAACCGAGGGAGCAACCTGGGTGGTAAAGAAATTCGATTGGTTGAGATGATGGCTCCTAATCTTGAGGAGGAGGTAAAGGAGCATAAAGATGAGAGCGATAGCAGCAAAAGTGACCATCATTGGAAGAGACCTTTGAAGAAAGCGAAGGTATCAGGTGATAATCCCGACGGAAGCGGTTTAAGCGGTTTGGGAGTTCCTGATGTTCCACTACTGGTTTGCACATTTTCCCTTAATTTTTTTTGTTTTGTTCATCTTCTTCATAAGTGACTTATTAATTGTTTACTTCTGCAGTCACCATTGAACGATCATCTTGA

mRNA sequence

ATGAGGCATGGGACCTATTTTGAGGATAACAGACACCATTTGGTGAGTAATGCCATTCCTCCTCCTTCACAGCCTAGACTACCCAAGAACCGAGGGAGCAACCTGGGTGGTAAAGAAATTCGATTGGTTGAGATGATGGCTCCTAATCTTGAGGAGGAGGTAAAGGAGCATAAAGATGAGAGCGATAGCAGCAAAAGTGACCATCATTGGAAGAGACCTTTGAAGAAAGCGAAGGTATCAGGTGATAATCCCGACGGAAGCGGTTTAAGCGTCACCATTGAACGATCATCTTGA

Coding sequence (CDS)

ATGAGGCATGGGACCTATTTTGAGGATAACAGACACCATTTGGTGAGTAATGCCATTCCTCCTCCTTCACAGCCTAGACTACCCAAGAACCGAGGGAGCAACCTGGGTGGTAAAGAAATTCGATTGGTTGAGATGATGGCTCCTAATCTTGAGGAGGAGGTAAAGGAGCATAAAGATGAGAGCGATAGCAGCAAAAGTGACCATCATTGGAAGAGACCTTTGAAGAAAGCGAAGGTATCAGGTGATAATCCCGACGGAAGCGGTTTAAGCGTCACCATTGAACGATCATCTTGA

Protein sequence

MRHGTYFEDNRHHLVSNAIPPPSQPRLPKNRGSNLGGKEIRLVEMMAPNLEEEVKEHKDESDSSKSDHHWKRPLKKAKVSGDNPDGSGLSVTIERSS

Homology

[Close]

BLAST of IVF0003835 vs. ExPASy TrEMBL
Match: A0A5D3C7E7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold157G00340 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 5.6e-44
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 1  MRHGTYFEDNRHHLVSNAIPPPSQPRLPKNRGSNLGGKEIRLVEMMAPNLEEEVKEHKDE 60
          MRHGTYFEDNRHHLVSNAIPPPSQPRLPKNRGSNLGGKEIRLVEMMAPNLEEEVKEHKDE
Sbjct: 1  MRHGTYFEDNRHHLVSNAIPPPSQPRLPKNRGSNLGGKEIRLVEMMAPNLEEEVKEHKDE 60

Query: 61 SDSSKSDHHWKRPLKKAKVSGDNPDGSGLS 91
          SDSSKSDHHWKRPLKKAKVSGDNPDGSGLS
Sbjct: 61 SDSSKSDHHWKRPLKKAKVSGDNPDGSGLS 90

[Close]

BLAST of IVF0003835 vs. ExPASy TrEMBL
Match: A0A5A7UVX0 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold970G00390 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.4e-39
Identity = 84/93 (90.32%), Postives = 86/93 (92.47%), Query Frame = 0


Query: 1   MRHGTYFEDNRHHLVSNAIPPPSQPRLPKNRGSNLGGKEIRLVEMMAPNLEEEVKEHKDE 60
           MRH TYFE+NRHHLVS+AIPPPSQPRLPKNRGSNLGGKEIRLVE MAPNLEEEV EHKDE
Sbjct: 219 MRHMTYFEENRHHLVSSAIPPPSQPRLPKNRGSNLGGKEIRLVEAMAPNLEEEVNEHKDE 278

Query: 61  SDSSKSDHHWKRPLKKAKVSGDNPDGSGLSVTI 94
           SDSSKSD HWKRPLKKAKVSGDNPDG GLS  I
Sbjct: 279 SDSSKSDRHWKRPLKKAKVSGDNPDGRGLSALI 311

[Close]

BLAST of IVF0003835 vs. ExPASy TrEMBL
Match: A0A5A7SQC9 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold506G00140 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 4.1e-39
Identity = 82/89 (92.13%), Postives = 85/89 (95.51%), Query Frame = 0


Query: 2   RHGTYFEDNRHHLVSNAIPPPSQPRLPKNRGSNLGGKEIRLVEMMAPNLEEEVKEHKDES 61
           +HGTYFEDNRHHLVS+ IPPPSQPRLPKNRGSNLGGKEIRLVE MAPNLEEEVKEHKDES
Sbjct: 214 KHGTYFEDNRHHLVSSVIPPPSQPRLPKNRGSNLGGKEIRLVEAMAPNLEEEVKEHKDES 273

Query: 62  DSSKSDHHWKRPLKKAKVSGDNPDGSGLS 91
           DSSKSD HWKRPLKKAKVSGD+PDG GLS
Sbjct: 274 DSSKSDRHWKRPLKKAKVSGDHPDGRGLS 302

[Close]

BLAST of IVF0003835 vs. ExPASy TrEMBL
Match: A0A5D3E2X8 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold595G00690 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 4.6e-38
Identity = 82/89 (92.13%), Postives = 84/89 (94.38%), Query Frame = 0


Query: 2   RHGTYFEDNRHHLVSNAIPPPSQPRLPKNRGSNLGGKEIRLVEMMAPNLEEEVKEHKDES 61
           RH TYFEDNRHHLVS+AIPPPSQPRLPKNRGSNLGGKEIRLVE+MAPNLEEEV EHKDES
Sbjct: 344 RHMTYFEDNRHHLVSSAIPPPSQPRLPKNRGSNLGGKEIRLVEVMAPNLEEEVNEHKDES 403

Query: 62  DSSKSDHHWKRPLKKAKVSGDNPDGSGLS 91
           DSSKSD HWKR LKKAKVSGDNPDG GLS
Sbjct: 404 DSSKSDRHWKRHLKKAKVSGDNPDGRGLS 432

[Close]

BLAST of IVF0003835 vs. ExPASy TrEMBL
Match: A0A5D3CXA5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G003220 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 4.6e-38
Identity = 80/89 (89.89%), Postives = 85/89 (95.51%), Query Frame = 0


Query: 2   RHGTYFEDNRHHLVSNAIPPPSQPRLPKNRGSNLGGKEIRLVEMMAPNLEEEVKEHKDES 61
           RHGTYFEDNRHHL+S+AIPPPSQP+LPKNRGSNLGGK+IRLVE+M PNLEEEVKEHKDES
Sbjct: 115 RHGTYFEDNRHHLMSSAIPPPSQPKLPKNRGSNLGGKKIRLVEVMTPNLEEEVKEHKDES 174

Query: 62  DSSKSDHHWKRPLKKAKVSGDNPDGSGLS 91
           DSSKSD HWKRPLKKAKVS DNPDG GLS
Sbjct: 175 DSSKSDRHWKRPLKKAKVSCDNPDGRGLS 203

[Close]

BLAST of IVF0003835 vs. NCBI nr
Match: KAA0061211.1 (hypothetical protein E6C27_scaffold455G00380 [Cucumis melo var. makuwa] >TYK06259.1 hypothetical protein E5676_scaffold157G00340 [Cucumis melo var. makuwa])

HSP 1 Score: 187 bits (474), Expect = 2.86e-59
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 1  MRHGTYFEDNRHHLVSNAIPPPSQPRLPKNRGSNLGGKEIRLVEMMAPNLEEEVKEHKDE 60
          MRHGTYFEDNRHHLVSNAIPPPSQPRLPKNRGSNLGGKEIRLVEMMAPNLEEEVKEHKDE
Sbjct: 1  MRHGTYFEDNRHHLVSNAIPPPSQPRLPKNRGSNLGGKEIRLVEMMAPNLEEEVKEHKDE 60

Query: 61 SDSSKSDHHWKRPLKKAKVSGDNPDGSGLS 90
          SDSSKSDHHWKRPLKKAKVSGDNPDGSGLS
Sbjct: 61 SDSSKSDHHWKRPLKKAKVSGDNPDGSGLS 90

[Close]

BLAST of IVF0003835 vs. NCBI nr
Match: KAA0057699.1 (hypothetical protein E6C27_scaffold126G00510 [Cucumis melo var. makuwa] >TYK27485.1 hypothetical protein E5676_scaffold970G00390 [Cucumis melo var. makuwa])

HSP 1 Score: 172 bits (437), Expect = 3.76e-49
Identity = 84/93 (90.32%), Postives = 86/93 (92.47%), Query Frame = 0


Query: 1   MRHGTYFEDNRHHLVSNAIPPPSQPRLPKNRGSNLGGKEIRLVEMMAPNLEEEVKEHKDE 60
           MRH TYFE+NRHHLVS+AIPPPSQPRLPKNRGSNLGGKEIRLVE MAPNLEEEV EHKDE
Sbjct: 219 MRHMTYFEENRHHLVSSAIPPPSQPRLPKNRGSNLGGKEIRLVEAMAPNLEEEVNEHKDE 278

Query: 61  SDSSKSDHHWKRPLKKAKVSGDNPDGSGLSVTI 93
           SDSSKSD HWKRPLKKAKVSGDNPDG GLS  I
Sbjct: 279 SDSSKSDRHWKRPLKKAKVSGDNPDGRGLSALI 311

[Close]

BLAST of IVF0003835 vs. NCBI nr
Match: TYK16513.1 (hypothetical protein E5676_scaffold21G003220 [Cucumis melo var. makuwa])

HSP 1 Score: 167 bits (424), Expect = 9.35e-49
Identity = 80/90 (88.89%), Postives = 85/90 (94.44%), Query Frame = 0


Query: 2   RHGTYFEDNRHHLVSNAIPPPSQPRLPKNRGSNLGGKEIRLVEMMAPNLEEEVKEHKDES 61
           RHGTYFEDNRHHL+S+AIPPPSQP+LPKNRGSNLGGK+IRLVE+M PNLEEEVKEHKDES
Sbjct: 115 RHGTYFEDNRHHLMSSAIPPPSQPKLPKNRGSNLGGKKIRLVEVMTPNLEEEVKEHKDES 174

Query: 62  DSSKSDHHWKRPLKKAKVSGDNPDGSGLSV 91
           DSSKSD HWKRPLKKAKVS DNPDG GLS 
Sbjct: 175 DSSKSDRHWKRPLKKAKVSCDNPDGRGLSA 204

[Close]

BLAST of IVF0003835 vs. NCBI nr
Match: KAA0031751.1 (hypothetical protein E6C27_scaffold506G00140 [Cucumis melo var. makuwa])

HSP 1 Score: 171 bits (433), Expect = 8.82e-48
Identity = 82/90 (91.11%), Postives = 85/90 (94.44%), Query Frame = 0


Query: 2   RHGTYFEDNRHHLVSNAIPPPSQPRLPKNRGSNLGGKEIRLVEMMAPNLEEEVKEHKDES 61
           +HGTYFEDNRHHLVS+ IPPPSQPRLPKNRGSNLGGKEIRLVE MAPNLEEEVKEHKDES
Sbjct: 214 KHGTYFEDNRHHLVSSVIPPPSQPRLPKNRGSNLGGKEIRLVEAMAPNLEEEVKEHKDES 273

Query: 62  DSSKSDHHWKRPLKKAKVSGDNPDGSGLSV 91
           DSSKSD HWKRPLKKAKVSGD+PDG GLS 
Sbjct: 274 DSSKSDRHWKRPLKKAKVSGDHPDGRGLSA 303

[Close]

BLAST of IVF0003835 vs. NCBI nr
Match: KAA0066963.1 (putative mitochondrial protein [Cucumis melo var. makuwa] >TYK30242.1 putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 167 bits (424), Expect = 2.04e-47
Identity = 82/90 (91.11%), Postives = 84/90 (93.33%), Query Frame = 0


Query: 2   RHGTYFEDNRHHLVSNAIPPPSQPRLPKNRGSNLGGKEIRLVEMMAPNLEEEVKEHKDES 61
           RH TYFEDNRHHLVS+AIPPPSQPRLPKNRGSNLGGKEIRLVE+MAPNLEEEV EHKDES
Sbjct: 344 RHMTYFEDNRHHLVSSAIPPPSQPRLPKNRGSNLGGKEIRLVEVMAPNLEEEVNEHKDES 403

Query: 62  DSSKSDHHWKRPLKKAKVSGDNPDGSGLSV 91
           DSSKSD HWKR LKKAKVSGDNPDG GLS 
Sbjct: 404 DSSKSDRHWKRHLKKAKVSGDNPDGRGLSA 433

The following BLAST results are available for this feature:

BLAST of IVF0003835 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0003835 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C7E7	5.6e-44	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UVX0	1.4e-39	90.32	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5A7SQC9	4.1e-39	92.13	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5D3E2X8	4.6e-38	92.13	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5D3CXA5	4.6e-38	89.89	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of IVF0003835 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0061211.1	2.86e-59	100.00	hypothetical protein E6C27_scaffold455G00380 [Cucumis melo var. makuwa] >TYK0625...	[more]
KAA0057699.1	3.76e-49	90.32	hypothetical protein E6C27_scaffold126G00510 [Cucumis melo var. makuwa] >TYK2748...	[more]
TYK16513.1	9.35e-49	88.89	hypothetical protein E5676_scaffold21G003220 [Cucumis melo var. makuwa]	[more]
KAA0031751.1	8.82e-48	91.11	hypothetical protein E6C27_scaffold506G00140 [Cucumis melo var. makuwa]	[more]
KAA0066963.1	2.04e-47	91.11	putative mitochondrial protein [Cucumis melo var. makuwa] >TYK30242.1 putative m...	[more]

BLAST of IVF0003835 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 40..67
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..69
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..97

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0003835.1	IVF0003835.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane