IVF0003762 (gene) Melon (IVF77) v1

Overview


Name	IVF0003762
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr05: 22479152 .. 22479618 (+)
RNA-Seq Expression	IVF0003762
Synteny	IVF0003762

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCCGCGACCGCAGCCATTGCAATGAGGATTCTCAATTCCCTCTTCCTCTTGACCAATGGGCTATCTGGTGTTGTTGGTGGTCTACAGGAAGCCTCTCCTCTTGGTGCTGCTCATTCAGCCTTGACCATATCGGCATAGTCTTTCTGATTGAAGCAATAAATTGCCTGCACGAATGCCTGCCTGACCTGGCTTCAACCGATTCTGCAGGCCTCGAGAGCAGTTTTCGTTACTGGATCGTCAGTGCTGGCTTGAAGTTCAACAATGAACTGATAAGTTCTGGAAGTGTTTCTCAGCACTTGGTTATTTGCTATCAAGACCAAGCCAACGTCATCTGCTGGACCTTTCAGATTTTCATTGGAGGTTTTGTTGCAAAACCCATAATCCTCATTTTGATAGCATATTCGATCGATCCACTGCTGTGTTTCCGGGTTACCCAAAGCTGGGTGAACAACGAGGAGAATGA

mRNA sequence

ATGACCCGCGACCGCAGCCATTGCAATGAGGATTCTCAATTCCCTCTTCCTCTTGACCAATGGGCTATCTGGTGTTGTTGGTGGTCTACAGGAAGCCTCTCCTCTTGGTGCTGCTCATTCAGCCTTGACCATATCGGCATAGTCTTTCTGATTGAAGCAATAAATTGCCTGCACGAATGCCTGCCTGACCTGGCTTCAACCGATTCTGCAGGCCTCGAGAGCAGTTTTCGTTACTGGATCGTCAGTGCTGGCTTGAAGTTCAACAATGAACTGATAAATTTTCATTGGAGGTTTTGTTGCAAAACCCATAATCCTCATTTTGATAGCATATTCGATCGATCCACTGCTGTGTTTCCGGGTTACCCAAAGCTGGGTGAACAACGAGGAGAATGA

Coding sequence (CDS)

ATGACCCGCGACCGCAGCCATTGCAATGAGGATTCTCAATTCCCTCTTCCTCTTGACCAATGGGCTATCTGGTGTTGTTGGTGGTCTACAGGAAGCCTCTCCTCTTGGTGCTGCTCATTCAGCCTTGACCATATCGGCATAGTCTTTCTGATTGAAGCAATAAATTGCCTGCACGAATGCCTGCCTGACCTGGCTTCAACCGATTCTGCAGGCCTCGAGAGCAGTTTTCGTTACTGGATCGTCAGTGCTGGCTTGAAGTTCAACAATGAACTGATAAATTTTCATTGGAGGTTTTGTTGCAAAACCCATAATCCTCATTTTGATAGCATATTCGATCGATCCACTGCTGTGTTTCCGGGTTACCCAAAGCTGGGTGAACAACGAGGAGAATGA

Protein sequence

MTRDRSHCNEDSQFPLPLDQWAIWCCWWSTGSLSSWCCSFSLDHIGIVFLIEAINCLHECLPDLASTDSAGLESSFRYWIVSAGLKFNNELINFHWRFCCKTHNPHFDSIFDRSTAVFPGYPKLGEQRGE

Homology

[Close]

BLAST of IVF0003762 vs. ExPASy TrEMBL
Match: A0A0A0LH07 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G034710 PE=4 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 3.6e-54
Identity = 104/127 (81.89%), Postives = 107/127 (84.25%), Query Frame = 0


Query: 1   MTRDRSHCNEDSQFPLPLDQWAIWCCWWSTGSLSSWCCSFSLDHIGIVFLIEAINCLHEC 60
           MT DR HCNEDSQ PLPLDQWAIW CWWSTGSL SWCCSFSLDHIGIVFLIE  NCLH+C
Sbjct: 1   MTCDRIHCNEDSQVPLPLDQWAIW-CWWSTGSLFSWCCSFSLDHIGIVFLIEVRNCLHQC 60

Query: 61  LPDLASTDSAGLESSFRYWIVSAGLKFNNELINFHWRFCCKTHNPHFDSIFDRSTAVFPG 120
           LPDLASTDSA LESSFRY I+SAGLKFNNEL     RF CKTHNPHFD IFD S AV PG
Sbjct: 61  LPDLASTDSASLESSFRYCIISAGLKFNNEL-----RFYCKTHNPHFDGIFDLSAAVLPG 120

Query: 121 YPKLGEQ 128
           +PKL EQ
Sbjct: 121 HPKLDEQ 121

[Close]

BLAST of IVF0003762 vs. ExPASy TrEMBL
Match: A0A5D3B998 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G00740 PE=4 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 7.0e-50
Identity = 92/93 (98.92%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1  MTRDRSHCNEDSQFPLPLDQWAIWCCWWSTGSLSSWCCSFSLDHIGIVFLIEAINCLHEC 60
          MTRDRSHCNEDSQFPLPLDQWAIWCCWWSTGSLSSWCCSFSLDHIGIVFLIEAINCLHEC
Sbjct: 1  MTRDRSHCNEDSQFPLPLDQWAIWCCWWSTGSLSSWCCSFSLDHIGIVFLIEAINCLHEC 60

Query: 61 LPDLASTDSAGLESSFRYWIVSAGLKFNNELIN 94
          LPDLASTDSAGLESSFRYWIVSAGLKFNNELI+
Sbjct: 61 LPDLASTDSAGLESSFRYWIVSAGLKFNNELIS 93

[Close]

BLAST of IVF0003762 vs. ExPASy TrEMBL
Match: A0A5A7TX74 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G001910 PE=4 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 1.4e-47
Identity = 91/93 (97.85%), Postives = 92/93 (98.92%), Query Frame = 0


Query: 1  MTRDRSHCNEDSQFPLPLDQWAIWCCWWSTGSLSSWCCSFSLDHIGIVFLIEAINCLHEC 60
          MTRDRSHCNEDSQFPLPLDQWAIW CWWSTGSLSSWCCSFSLDHIGIVFLIEAINCLHEC
Sbjct: 1  MTRDRSHCNEDSQFPLPLDQWAIW-CWWSTGSLSSWCCSFSLDHIGIVFLIEAINCLHEC 60

Query: 61 LPDLASTDSAGLESSFRYWIVSAGLKFNNELIN 94
          LPDLASTDSAGLESSFRYWIVSAGLKFNNELI+
Sbjct: 61 LPDLASTDSAGLESSFRYWIVSAGLKFNNELIS 92

[Close]

BLAST of IVF0003762 vs. NCBI nr
Match: KGN61018.1 (hypothetical protein Csa_021204 [Cucumis sativus])

HSP 1 Score: 219 bits (557), Expect = 3.25e-71
Identity = 104/127 (81.89%), Postives = 107/127 (84.25%), Query Frame = 0


Query: 1   MTRDRSHCNEDSQFPLPLDQWAIWCCWWSTGSLSSWCCSFSLDHIGIVFLIEAINCLHEC 60
           MT DR HCNEDSQ PLPLDQWAIWC WWSTGSL SWCCSFSLDHIGIVFLIE  NCLH+C
Sbjct: 1   MTCDRIHCNEDSQVPLPLDQWAIWC-WWSTGSLFSWCCSFSLDHIGIVFLIEVRNCLHQC 60

Query: 61  LPDLASTDSAGLESSFRYWIVSAGLKFNNELINFHWRFCCKTHNPHFDSIFDRSTAVFPG 120
           LPDLASTDSA LESSFRY I+SAGLKFNNEL     RF CKTHNPHFD IFD S AV PG
Sbjct: 61  LPDLASTDSASLESSFRYCIISAGLKFNNEL-----RFYCKTHNPHFDGIFDLSAAVLPG 120

Query: 121 YPKLGEQ 127
           +PKL EQ
Sbjct: 121 HPKLDEQ 121

[Close]

BLAST of IVF0003762 vs. NCBI nr
Match: TYJ96440.1 (hypothetical protein E5676_scaffold546G00740 [Cucumis melo var. makuwa])

HSP 1 Score: 205 bits (521), Expect = 3.82e-65
Identity = 92/93 (98.92%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1  MTRDRSHCNEDSQFPLPLDQWAIWCCWWSTGSLSSWCCSFSLDHIGIVFLIEAINCLHEC 60
          MTRDRSHCNEDSQFPLPLDQWAIWCCWWSTGSLSSWCCSFSLDHIGIVFLIEAINCLHEC
Sbjct: 1  MTRDRSHCNEDSQFPLPLDQWAIWCCWWSTGSLSSWCCSFSLDHIGIVFLIEAINCLHEC 60

Query: 61 LPDLASTDSAGLESSFRYWIVSAGLKFNNELIN 93
          LPDLASTDSAGLESSFRYWIVSAGLKFNNELI+
Sbjct: 61 LPDLASTDSAGLESSFRYWIVSAGLKFNNELIS 93

[Close]

BLAST of IVF0003762 vs. NCBI nr
Match: KAA0048112.1 (hypothetical protein E6C27_scaffold385G001910 [Cucumis melo var. makuwa])

HSP 1 Score: 197 bits (501), Expect = 4.10e-62
Identity = 91/93 (97.85%), Postives = 92/93 (98.92%), Query Frame = 0


Query: 1  MTRDRSHCNEDSQFPLPLDQWAIWCCWWSTGSLSSWCCSFSLDHIGIVFLIEAINCLHEC 60
          MTRDRSHCNEDSQFPLPLDQWAIWC WWSTGSLSSWCCSFSLDHIGIVFLIEAINCLHEC
Sbjct: 1  MTRDRSHCNEDSQFPLPLDQWAIWC-WWSTGSLSSWCCSFSLDHIGIVFLIEAINCLHEC 60

Query: 61 LPDLASTDSAGLESSFRYWIVSAGLKFNNELIN 93
          LPDLASTDSAGLESSFRYWIVSAGLKFNNELI+
Sbjct: 61 LPDLASTDSAGLESSFRYWIVSAGLKFNNELIS 92

The following BLAST results are available for this feature:

BLAST of IVF0003762 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0003762 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LH07	3.6e-54	81.89	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G034710 PE=4 SV=1	[more]
A0A5D3B998	7.0e-50	98.92	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TX74	1.4e-47	97.85	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of IVF0003762 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN61018.1	3.25e-71	81.89	hypothetical protein Csa_021204 [Cucumis sativus]	[more]
TYJ96440.1	3.82e-65	98.92	hypothetical protein E5676_scaffold546G00740 [Cucumis melo var. makuwa]	[more]
KAA0048112.1	4.10e-62	97.85	hypothetical protein E6C27_scaffold385G001910 [Cucumis melo var. makuwa]	[more]

BLAST of IVF0003762 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0003762.1	IVF0003762.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane