IVF0003652 (gene) Melon (IVF77) v1

Overview


Name	IVF0003652
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	classical arabinogalactan protein 26
Location	chr01: 28218914 .. 28219579 (+)
RNA-Seq Expression	IVF0003652
Synteny	IVF0003652

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCTTTCTTCTTCCTCTCAATTTCTCTACTTTTTTAGAAATATAAAATCTCTCTCTCTCTCTCTCTCTCTCATCATTGAAAATGGCTTCCATTTTCTCTCTCTACATTCCCATTTTCATGGCCTACACAGCTTCCTTTTTCCCTTTCGCTTTCGCTTCTTATCCCAATTACTTCCCTACCCACCGGTACCTCATGACTTCTTCCATCTCCGCCGCCCCCGAATTTTCCCCGGCACCGGCGCCGTCGTCAGACATTTCTCCACTCTTTCCCACTCCCGGCGACGCTACCCTTCCGCCATCCTCCTTGCCTACCATACCCTCCAGTCCCAGCCCTCCGAACCCTGATTTTATGGACGTTGCGCCGGCGCCGGAGATGCCTCTTTCGCCGACTTGGTCCATGCCATTCTCTGCCGCTGCTGCTCTTAACTCCGTTGGGTGGTGTTGTTCGGTTTTTCTAGCTCTTATGACGGCTCTCGCTGCAGAGCTCCACCGGTGACGGGTGAGCCGCCGTTGCTCGGATTTTAGTGGACATTGGAGTGTAGTTATGTTTTATTGATTTGAGTAATTCTCTTGTCTTTTACTTTTGTGTTTTCTTGTTACTATATATATATACACACATATTTATTTAATTTTTGGATTCGAGTCTATTTTATTTTTTCAATTCCA

mRNA sequence

CTTCTTTCTTCTTCCTCTCAATTTCTCTACTTTTTTAGAAATATAAAATCTCTCTCTCTCTCTCTCTCTCTCATCATTGAAAATGGCTTCCATTTTCTCTCTCTACATTCCCATTTTCATGGCCTACACAGCTTCCTTTTTCCCTTTCGCTTTCGCTTCTTATCCCAATTACTTCCCTACCCACCGGTACCTCATGACTTCTTCCATCTCCGCCGCCCCCGAATTTTCCCCGGCACCGGCGCCGTCGTCAGACATTTCTCCACTCTTTCCCACTCCCGGCGACGCTACCCTTCCGCCATCCTCCTTGCCTACCATACCCTCCAGTCCCAGCCCTCCGAACCCTGATTTTATGGACGTTGCGCCGGCGCCGGAGATGCCTCTTTCGCCGACTTGGTCCATGCCATTCTCTGCCGCTGCTGCTCTTAACTCCGTTGGGTGGTGTTGTTCGGTTTTTCTAGCTCTTATGACGGCTCTCGCTGCAGAGCTCCACCGGTGACGGGTGAGCCGCCGTTGCTCGGATTTTAGTGGACATTGGAGTGTAGTTATGTTTTATTGATTTGAGTAATTCTCTTGTCTTTTACTTTTGTGTTTTCTTGTTACTATATATATATACACACATATTTATTTAATTTTTGGATTCGAGTCTATTTTATTTTTTCAATTCCA

Coding sequence (CDS)

ATGGCTTCCATTTTCTCTCTCTACATTCCCATTTTCATGGCCTACACAGCTTCCTTTTTCCCTTTCGCTTTCGCTTCTTATCCCAATTACTTCCCTACCCACCGGTACCTCATGACTTCTTCCATCTCCGCCGCCCCCGAATTTTCCCCGGCACCGGCGCCGTCGTCAGACATTTCTCCACTCTTTCCCACTCCCGGCGACGCTACCCTTCCGCCATCCTCCTTGCCTACCATACCCTCCAGTCCCAGCCCTCCGAACCCTGATTTTATGGACGTTGCGCCGGCGCCGGAGATGCCTCTTTCGCCGACTTGGTCCATGCCATTCTCTGCCGCTGCTGCTCTTAACTCCGTTGGGTGGTGTTGTTCGGTTTTTCTAGCTCTTATGACGGCTCTCGCTGCAGAGCTCCACCGGTGA

Protein sequence

MASIFSLYIPIFMAYTASFFPFAFASYPNYFPTHRYLMTSSISAAPEFSPAPAPSSDISPLFPTPGDATLPPSSLPTIPSSPSPPNPDFMDVAPAPEMPLSPTWSMPFSAAAALNSVGWCCSVFLALMTALAAELHR

Homology

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BLAST of IVF0003652 vs. ExPASy Swiss-Prot
Match: Q94F57 (Classical arabinogalactan protein 26 OS=Arabidopsis thaliana OX=3702 GN=AGP26 PE=2 SV=2)

HSP 1 Score: 51.2 bits (121), Expect = 1.1e-05
Identity = 48/108 (44.44%), Postives = 59/108 (54.63%), Query Frame = 0


Query: 40  SSISAAPEFSP---------APAPSSDISPLFPTPGDATLPPSS-----LPTIPSSPSPP 99
           S+ISAAP F P          PA S D SPLFPTPG + + PS      +PTIPSS SPP
Sbjct: 26  STISAAPSFLPEAPSSFSASTPAMSPDTSPLFPTPGSSEMSPSPSESSIMPTIPSSLSPP 85

Query: 100 NPDFMDVAPAPEMPLSPTWS-MPFSAAAALNSVGWCCSVFLALMTALA 133
           NPD   V P P + +SP  S +P S++  L S      + + LM  LA
Sbjct: 86  NPD--AVTPDPLLEVSPVGSPLPASSSVCLVSSQLSSLLLVLLMLLLA 131

[Close]

BLAST of IVF0003652 vs. ExPASy TrEMBL
Match: A0A5A7UQZ3 (Classical arabinogalactan protein 26 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G002010 PE=4 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 1.9e-66
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 1   MASIFSLYIPIFMAYTASFFPFAFASYPNYFPTHRYLMTSSISAAPEFSPAPAPSSDISP 60
           MASIFSLYIPIFMAYTASFFPFAFASYPNYFPTHRYLMTSSISAAPEFSPAPAPSSDISP
Sbjct: 1   MASIFSLYIPIFMAYTASFFPFAFASYPNYFPTHRYLMTSSISAAPEFSPAPAPSSDISP 60

Query: 61  LFPTPGDATLPPSSLPTIPSSPSPPNPDFMDVAPAPEMPLSPTWSMPFSAAAALNSVGWC 120
           LFPTPGDATLPPSSLPTIPSSPSPPNPDFMDVAPAPEMPLSPTWSMPFSAAAALNSVGWC
Sbjct: 61  LFPTPGDATLPPSSLPTIPSSPSPPNPDFMDVAPAPEMPLSPTWSMPFSAAAALNSVGWC 120

Query: 121 CSVFLALMTALAAELHR 138
           CSVFLALMTALAAELHR
Sbjct: 121 CSVFLALMTALAAELHR 137

[Close]

BLAST of IVF0003652 vs. ExPASy TrEMBL
Match: A0A1S3BRG9 (classical arabinogalactan protein 26 OS=Cucumis melo OX=3656 GN=LOC103492730 PE=4 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 1.9e-66
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 1   MASIFSLYIPIFMAYTASFFPFAFASYPNYFPTHRYLMTSSISAAPEFSPAPAPSSDISP 60
           MASIFSLYIPIFMAYTASFFPFAFASYPNYFPTHRYLMTSSISAAPEFSPAPAPSSDISP
Sbjct: 1   MASIFSLYIPIFMAYTASFFPFAFASYPNYFPTHRYLMTSSISAAPEFSPAPAPSSDISP 60

Query: 61  LFPTPGDATLPPSSLPTIPSSPSPPNPDFMDVAPAPEMPLSPTWSMPFSAAAALNSVGWC 120
           LFPTPGDATLPPSSLPTIPSSPSPPNPDFMDVAPAPEMPLSPTWSMPFSAAAALNSVGWC
Sbjct: 61  LFPTPGDATLPPSSLPTIPSSPSPPNPDFMDVAPAPEMPLSPTWSMPFSAAAALNSVGWC 120

Query: 121 CSVFLALMTALAAELHR 138
           CSVFLALMTALAAELHR
Sbjct: 121 CSVFLALMTALAAELHR 137

[Close]

BLAST of IVF0003652 vs. ExPASy TrEMBL
Match: A0A0A0K510 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G390090 PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 7.8e-52
Identity = 116/137 (84.67%), Postives = 123/137 (89.78%), Query Frame = 0


Query: 1   MASIFSLYIPIFMAYTASFFPFAFASYPNYFPTHRYLMTSSISAAPEFSPAPAPSSDISP 60
           MASIFSLYIPIFMAYTAS FPF+FASYPN FPTH   + SSISAAPEFSP+PAP+SDISP
Sbjct: 1   MASIFSLYIPIFMAYTASVFPFSFASYPNDFPTH---LISSISAAPEFSPSPAPASDISP 60

Query: 61  LFPTPGDATLPPSSLPTIPSSPSPPNPDFMDVAPAPEMPLSPTWSMPFSAAAALNSVGWC 120
           LFPTPGDATLPPSSLPTIPSSPSPPNPDFMD APAPEMPLSP+ S+PFS AAALNS GWC
Sbjct: 61  LFPTPGDATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLSPSQSLPFSTAAALNSGGWC 120

Query: 121 CSVFLALMTALAAELHR 138
           CSVF+AL T L AEL R
Sbjct: 121 CSVFVALTTTLVAELRR 134

[Close]

BLAST of IVF0003652 vs. ExPASy TrEMBL
Match: A0A6J1GPB2 (classical arabinogalactan protein 26 OS=Cucurbita moschata OX=3662 GN=LOC111456234 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 7.8e-44
Identity = 105/139 (75.54%), Postives = 118/139 (84.89%), Query Frame = 0


Query: 1   MASIFSLYIPIFMAYTASFFPFAFASYPNYFPTHRYLMTSSISAAPEFSPAPAPS--SDI 60
           MASIFSLYIPIFMAYTAS  PF+FASYPN+FP     + SSISAAPEFSP+P+PS  SDI
Sbjct: 1   MASIFSLYIPIFMAYTASILPFSFASYPNHFPP----LISSISAAPEFSPSPSPSPASDI 60

Query: 61  SPLFPTPGDATLPPSSLPTIPSSPSPPNPDFMDVAPAPEMPLSPTWSMPFSAAAALNSVG 120
           +PLFPTPG ATLPPSSLPTIPSSPSPPNPDFMD APAPEMPL P+ S+PFSAAA LNS G
Sbjct: 61  APLFPTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLPPSQSLPFSAAATLNSGG 120

Query: 121 WCCSVFLALMTALAAELHR 138
           WC S+++AL  A+ AE+ R
Sbjct: 121 WCWSIWVALTAAIVAEVCR 135

[Close]

BLAST of IVF0003652 vs. ExPASy TrEMBL
Match: A0A6J1JX46 (classical arabinogalactan protein 26 OS=Cucurbita maxima OX=3661 GN=LOC111488263 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 6.6e-43
Identity = 104/139 (74.82%), Postives = 116/139 (83.45%), Query Frame = 0


Query: 1   MASIFSLYIPIFMAYTASFFPFAFASYPNYFPTHRYLMTSSISAAPEFSPAPAPS--SDI 60
           MASIFSLYIPIFMAYTAS F F+FASYPN+FP     + SSISAAPEFSP+P+PS  SDI
Sbjct: 1   MASIFSLYIPIFMAYTASIFAFSFASYPNHFPP----LISSISAAPEFSPSPSPSPASDI 60

Query: 61  SPLFPTPGDATLPPSSLPTIPSSPSPPNPDFMDVAPAPEMPLSPTWSMPFSAAAALNSVG 120
           SPLFPTPG ATLPPSSLPTIPSSPSPPNPDFMD  PAPEMPL P+ S+PFSAAA LNS G
Sbjct: 61  SPLFPTPGGATLPPSSLPTIPSSPSPPNPDFMDATPAPEMPLPPSQSLPFSAAATLNSGG 120

Query: 121 WCCSVFLALMTALAAELHR 138
           WC S+++AL  A+  E+ R
Sbjct: 121 WCWSIWVALTAAIVEEVCR 135

[Close]

BLAST of IVF0003652 vs. NCBI nr
Match: XP_008451434.1 (PREDICTED: classical arabinogalactan protein 26 [Cucumis melo] >KAA0057538.1 classical arabinogalactan protein 26 [Cucumis melo var. makuwa] >TYK18260.1 classical arabinogalactan protein 26 [Cucumis melo var. makuwa])

HSP 1 Score: 259 bits (663), Expect = 5.03e-87
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 1   MASIFSLYIPIFMAYTASFFPFAFASYPNYFPTHRYLMTSSISAAPEFSPAPAPSSDISP 60
           MASIFSLYIPIFMAYTASFFPFAFASYPNYFPTHRYLMTSSISAAPEFSPAPAPSSDISP
Sbjct: 1   MASIFSLYIPIFMAYTASFFPFAFASYPNYFPTHRYLMTSSISAAPEFSPAPAPSSDISP 60

Query: 61  LFPTPGDATLPPSSLPTIPSSPSPPNPDFMDVAPAPEMPLSPTWSMPFSAAAALNSVGWC 120
           LFPTPGDATLPPSSLPTIPSSPSPPNPDFMDVAPAPEMPLSPTWSMPFSAAAALNSVGWC
Sbjct: 61  LFPTPGDATLPPSSLPTIPSSPSPPNPDFMDVAPAPEMPLSPTWSMPFSAAAALNSVGWC 120

Query: 121 CSVFLALMTALAAELHR 137
           CSVFLALMTALAAELHR
Sbjct: 121 CSVFLALMTALAAELHR 137

[Close]

BLAST of IVF0003652 vs. NCBI nr
Match: XP_011659314.1 (classical arabinogalactan protein 26 [Cucumis sativus])

HSP 1 Score: 211 bits (537), Expect = 7.39e-68
Identity = 116/137 (84.67%), Postives = 123/137 (89.78%), Query Frame = 0


Query: 1   MASIFSLYIPIFMAYTASFFPFAFASYPNYFPTHRYLMTSSISAAPEFSPAPAPSSDISP 60
           MASIFSLYIPIFMAYTAS FPF+FASYPN FPTH   + SSISAAPEFSP+PAP+SDISP
Sbjct: 1   MASIFSLYIPIFMAYTASVFPFSFASYPNDFPTH---LISSISAAPEFSPSPAPASDISP 60

Query: 61  LFPTPGDATLPPSSLPTIPSSPSPPNPDFMDVAPAPEMPLSPTWSMPFSAAAALNSVGWC 120
           LFPTPGDATLPPSSLPTIPSSPSPPNPDFMD APAPEMPLSP+ S+PFS AAALNS GWC
Sbjct: 61  LFPTPGDATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLSPSQSLPFSTAAALNSGGWC 120

Query: 121 CSVFLALMTALAAELHR 137
           CSVF+AL T L AEL R
Sbjct: 121 CSVFVALTTTLVAELRR 134

[Close]

BLAST of IVF0003652 vs. NCBI nr
Match: XP_023548939.1 (classical arabinogalactan protein 26-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 186 bits (473), Expect = 4.29e-58
Identity = 106/139 (76.26%), Postives = 118/139 (84.89%), Query Frame = 0


Query: 1   MASIFSLYIPIFMAYTASFFPFAFASYPNYFPTHRYLMTSSISAAPEFSPAPAPS--SDI 60
           MASIFSLYIPIFMAYTAS FPF+FASYPN+FP     + SSISAAPEFSP+P+PS  SDI
Sbjct: 1   MASIFSLYIPIFMAYTASIFPFSFASYPNHFPP----LISSISAAPEFSPSPSPSPASDI 60

Query: 61  SPLFPTPGDATLPPSSLPTIPSSPSPPNPDFMDVAPAPEMPLSPTWSMPFSAAAALNSVG 120
           SPLFPTPG ATLPPSSLPTIPSSPSPPNPDFMD APAPEMPL P+ S+PFSA A LNS G
Sbjct: 61  SPLFPTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLPPSQSLPFSATATLNSGG 120

Query: 121 WCCSVFLALMTALAAELHR 137
           WC S+++AL  A+ AE+ R
Sbjct: 121 WCWSIWVALTAAIVAEVCR 135

[Close]

BLAST of IVF0003652 vs. NCBI nr
Match: KAG6575865.1 (hypothetical protein SDJN03_26504, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 186 bits (471), Expect = 8.65e-58
Identity = 106/139 (76.26%), Postives = 118/139 (84.89%), Query Frame = 0


Query: 1   MASIFSLYIPIFMAYTASFFPFAFASYPNYFPTHRYLMTSSISAAPEFSPAPAPS--SDI 60
           MASIFSLYIPIFMAYTAS  PF+FASYPN+FP     + SSISAAPEFSP+P+PS  SDI
Sbjct: 1   MASIFSLYIPIFMAYTASILPFSFASYPNHFPP----LISSISAAPEFSPSPSPSPASDI 60

Query: 61  SPLFPTPGDATLPPSSLPTIPSSPSPPNPDFMDVAPAPEMPLSPTWSMPFSAAAALNSVG 120
           SPLFPTPG ATLPPSSLPTIPSSPSPPNPDFMD APAPEMPL P+ S+PFSAAA LNS G
Sbjct: 61  SPLFPTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLPPSQSLPFSAAATLNSGG 120

Query: 121 WCCSVFLALMTALAAELHR 137
           WC S+++AL  A+ AE+ R
Sbjct: 121 WCWSIWVALTAAIVAEVCR 135

[Close]

BLAST of IVF0003652 vs. NCBI nr
Match: XP_022953817.1 (classical arabinogalactan protein 26 [Cucurbita moschata])

HSP 1 Score: 184 bits (468), Expect = 2.48e-57
Identity = 105/139 (75.54%), Postives = 118/139 (84.89%), Query Frame = 0


Query: 1   MASIFSLYIPIFMAYTASFFPFAFASYPNYFPTHRYLMTSSISAAPEFSPAPAPS--SDI 60
           MASIFSLYIPIFMAYTAS  PF+FASYPN+FP     + SSISAAPEFSP+P+PS  SDI
Sbjct: 1   MASIFSLYIPIFMAYTASILPFSFASYPNHFPP----LISSISAAPEFSPSPSPSPASDI 60

Query: 61  SPLFPTPGDATLPPSSLPTIPSSPSPPNPDFMDVAPAPEMPLSPTWSMPFSAAAALNSVG 120
           +PLFPTPG ATLPPSSLPTIPSSPSPPNPDFMD APAPEMPL P+ S+PFSAAA LNS G
Sbjct: 61  APLFPTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLPPSQSLPFSAAATLNSGG 120

Query: 121 WCCSVFLALMTALAAELHR 137
           WC S+++AL  A+ AE+ R
Sbjct: 121 WCWSIWVALTAAIVAEVCR 135

[Close]

BLAST of IVF0003652 vs. TAIR 10
Match: AT2G47930.1 (arabinogalactan protein 26 )

HSP 1 Score: 51.2 bits (121), Expect = 7.6e-07
Identity = 48/108 (44.44%), Postives = 59/108 (54.63%), Query Frame = 0


Query: 40  SSISAAPEFSP---------APAPSSDISPLFPTPGDATLPPSS-----LPTIPSSPSPP 99
           S+ISAAP F P          PA S D SPLFPTPG + + PS      +PTIPSS SPP
Sbjct: 26  STISAAPSFLPEAPSSFSASTPAMSPDTSPLFPTPGSSEMSPSPSESSIMPTIPSSLSPP 85

Query: 100 NPDFMDVAPAPEMPLSPTWS-MPFSAAAALNSVGWCCSVFLALMTALA 133
           NPD   V P P + +SP  S +P S++  L S      + + LM  LA
Sbjct: 86  NPD--AVTPDPLLEVSPVGSPLPASSSVCLVSSQLSSLLLVLLMLLLA 131

The following BLAST results are available for this feature:

BLAST of IVF0003652 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94F57	1.1e-05	44.44	Classical arabinogalactan protein 26 OS=Arabidopsis thaliana OX=3702 GN=AGP26 PE...	[more]

BLAST of IVF0003652 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UQZ3	1.9e-66	100.00	Classical arabinogalactan protein 26 OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A1S3BRG9	1.9e-66	100.00	classical arabinogalactan protein 26 OS=Cucumis melo OX=3656 GN=LOC103492730 PE=...	[more]
A0A0A0K510	7.8e-52	84.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G390090 PE=4 SV=1	[more]
A0A6J1GPB2	7.8e-44	75.54	classical arabinogalactan protein 26 OS=Cucurbita moschata OX=3662 GN=LOC1114562...	[more]
A0A6J1JX46	6.6e-43	74.82	classical arabinogalactan protein 26 OS=Cucurbita maxima OX=3661 GN=LOC111488263...	[more]

BLAST of IVF0003652 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008451434.1	5.03e-87	100.00	PREDICTED: classical arabinogalactan protein 26 [Cucumis melo] >KAA0057538.1 cla...	[more]
XP_011659314.1	7.39e-68	84.67	classical arabinogalactan protein 26 [Cucumis sativus]	[more]
XP_023548939.1	4.29e-58	76.26	classical arabinogalactan protein 26-like [Cucurbita pepo subsp. pepo]	[more]
KAG6575865.1	8.65e-58	76.26	hypothetical protein SDJN03_26504, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022953817.1	2.48e-57	75.54	classical arabinogalactan protein 26 [Cucurbita moschata]	[more]

BLAST of IVF0003652 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G47930.1	7.6e-07	44.44	arabinogalactan protein 26	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 48..94
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..92
IPR039346	Classical arabinogalactan protein 25/26	PANTHER	PTHR35725	CLASSICAL ARABINOGALACTAN PROTEIN 26	coord: 1..129

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0003652.1	IVF0003652.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane