IVF0003553 (gene) Melon (IVF77) v1

Overview


Name	IVF0003553
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	GATA zinc finger domain-containing protein 10-like isoform X2
Location	chr10: 6749503 .. 6749889 (+)
RNA-Seq Expression	IVF0003553
Synteny	IVF0003553

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAACATTTGGAACGATATATTATGATTCAGGAGTCGGTCAATCGTCATACTTTGGAAGAAGATATTACAATTCAGAGGTAGGTCCATCATCAACGGACTTTGGGCAGCAATACTATGATTTAGGGAGCGATCCATCGTCTTCATACATGCATGATCACGGGCGTGGTCGTGGAGAACATAATGAATATTTGTACTACGAAGTGCCTGCAGCGGTACCCGAGCAATCAGATGAGCAACAGCAACAAGAGAATGCCGCGGTACCCGAGCAATCAGATGAGCAACAACAACAAGAGAATCAGGAGGAAATACAACAACAAAGAGTTCAAAGTCGACGACGACAACCAGCTAGAAACCGTCGACGTCCAGGTTGTGGAACACATTGA

mRNA sequence

ATGCCAACATTTGGAACGATATATTATGATTCAGGAGTCGGTCAATCGTCATACTTTGGAAGAAGATATTACAATTCAGAGGTAGGTCCATCATCAACGGACTTTGGGCAGCAATACTATGATTTAGGGAGCGATCCATCGTCTTCATACATGCATGATCACGGGCGTGGTCGTGGAGAACATAATGAATATTTGTACTACGAAGTGCCTGCAGCGGTACCCGAGCAATCAGATGAGCAACAGCAACAAGAGAATGCCGCGGTACCCGAGCAATCAGATGAGCAACAACAACAAGAGAATCAGGAGGAAATACAACAACAAAGAGTTCAAAGTCGACGACGACAACCAGCTAGAAACCGTCGACGTCCAGGTTGTGGAACACATTGA

Coding sequence (CDS)

ATGCCAACATTTGGAACGATATATTATGATTCAGGAGTCGGTCAATCGTCATACTTTGGAAGAAGATATTACAATTCAGAGGTAGGTCCATCATCAACGGACTTTGGGCAGCAATACTATGATTTAGGGAGCGATCCATCGTCTTCATACATGCATGATCACGGGCGTGGTCGTGGAGAACATAATGAATATTTGTACTACGAAGTGCCTGCAGCGGTACCCGAGCAATCAGATGAGCAACAGCAACAAGAGAATGCCGCGGTACCCGAGCAATCAGATGAGCAACAACAACAAGAGAATCAGGAGGAAATACAACAACAAAGAGTTCAAAGTCGACGACGACAACCAGCTAGAAACCGTCGACGTCCAGGTTGTGGAACACATTGA

Protein sequence

MPTFGTIYYDSGVGQSSYFGRRYYNSEVGPSSTDFGQQYYDLGSDPSSSYMHDHGRGRGEHNEYLYYEVPAAVPEQSDEQQQQENAAVPEQSDEQQQQENQEEIQQQRVQSRRRQPARNRRRPGCGTH

Homology

[Close]

BLAST of IVF0003553 vs. ExPASy TrEMBL
Match: A0A5D3BX46 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2679G00120 PE=4 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 3.0e-61
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MPTFGTIYYDSGVGQSSYFGRRYYNSEVGPSSTDFGQQYYDLGSDPSSSYMHDHGRGRGE 60
           MPTFGTIYYDSGVGQSSYFGRRYYNSEVGPSSTDFGQQYYDLGSDPSSSYMHDHGRGRGE
Sbjct: 116 MPTFGTIYYDSGVGQSSYFGRRYYNSEVGPSSTDFGQQYYDLGSDPSSSYMHDHGRGRGE 175

Query: 61  HNEYLYYEVPAAVPEQSDEQQQQENAAVPEQSDEQQQQENQEEIQQQRVQSRRRQPARNR 120
           HNEYLYYEVPAAVPEQSDEQQQQENAAVPEQSDEQQQQENQEEIQQQRVQSRRRQPARNR
Sbjct: 176 HNEYLYYEVPAAVPEQSDEQQQQENAAVPEQSDEQQQQENQEEIQQQRVQSRRRQPARNR 235

Query: 121 RRPGCGTH 129
           RRPGCGTH
Sbjct: 236 RRPGCGTH 243

[Close]

BLAST of IVF0003553 vs. ExPASy TrEMBL
Match: A0A5A7U3A2 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold88G001210 PE=4 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 3.0e-61
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MPTFGTIYYDSGVGQSSYFGRRYYNSEVGPSSTDFGQQYYDLGSDPSSSYMHDHGRGRGE 60
           MPTFGTIYYDSGVGQSSYFGRRYYNSEVGPSSTDFGQQYYDLGSDPSSSYMHDHGRGRGE
Sbjct: 121 MPTFGTIYYDSGVGQSSYFGRRYYNSEVGPSSTDFGQQYYDLGSDPSSSYMHDHGRGRGE 180

Query: 61  HNEYLYYEVPAAVPEQSDEQQQQENAAVPEQSDEQQQQENQEEIQQQRVQSRRRQPARNR 120
           HNEYLYYEVPAAVPEQSDEQQQQENAAVPEQSDEQQQQENQEEIQQQRVQSRRRQPARNR
Sbjct: 181 HNEYLYYEVPAAVPEQSDEQQQQENAAVPEQSDEQQQQENQEEIQQQRVQSRRRQPARNR 240

Query: 121 RRPGCGTH 129
           RRPGCGTH
Sbjct: 241 RRPGCGTH 248

[Close]

BLAST of IVF0003553 vs. ExPASy TrEMBL
Match: A0A5A7U5S8 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1250G00410 PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 2.2e-56
Identity = 121/128 (94.53%), Postives = 122/128 (95.31%), Query Frame = 0


Query: 1   MPTFGTIYYDSGVGQSSYFGRRYYNSEVGPSSTDFGQQYYDLGSDPSSSYMHDHGRGRGE 60
           MPTFGT YYDSGVGQSS FGR YYNSE G SSTDFGQQYYDLGSDPSSSYMHDHGRGRGE
Sbjct: 201 MPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHDHGRGRGE 260

Query: 61  HNEYLYYEVPAAVPEQSDEQQQQENAAVPEQSDEQQQQENQEEIQQQRVQSRRRQPARNR 120
           HNEYLYYEVPAAVP+QSDEQQQQENA VPEQSDEQQQQENQEEIQQQRVQSRRRQPARNR
Sbjct: 261 HNEYLYYEVPAAVPKQSDEQQQQENAVVPEQSDEQQQQENQEEIQQQRVQSRRRQPARNR 320

Query: 121 RRPGCGTH 129
           RRPGCGTH
Sbjct: 321 RRPGCGTH 328

[Close]

BLAST of IVF0003553 vs. ExPASy TrEMBL
Match: A0A5D3BSU2 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1418G00180 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 2.7e-54
Identity = 119/128 (92.97%), Postives = 120/128 (93.75%), Query Frame = 0


Query: 1   MPTFGTIYYDSGVGQSSYFGRRYYNSEVGPSSTDFGQQYYDLGSDPSSSYMHDHGRGRGE 60
           MPTFGT YYDSGVGQSS FGR YYNSE G SSTDFGQQYYDLGSDPSSSYMH HGRGRGE
Sbjct: 3   MPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGE 62

Query: 61  HNEYLYYEVPAAVPEQSDEQQQQENAAVPEQSDEQQQQENQEEIQQQRVQSRRRQPARNR 120
           HNEYLYYEVPAAVPEQS+E QQQENAAVP QSDEQQQQENQEEIQQQRVQSRRRQPARNR
Sbjct: 63  HNEYLYYEVPAAVPEQSNELQQQENAAVPGQSDEQQQQENQEEIQQQRVQSRRRQPARNR 122

Query: 121 RRPGCGTH 129
           RRPGCGTH
Sbjct: 123 RRPGCGTH 130

[Close]

BLAST of IVF0003553 vs. ExPASy TrEMBL
Match: A0A5A7SU33 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold400G00810 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 2.7e-54
Identity = 119/128 (92.97%), Postives = 120/128 (93.75%), Query Frame = 0


Query: 1   MPTFGTIYYDSGVGQSSYFGRRYYNSEVGPSSTDFGQQYYDLGSDPSSSYMHDHGRGRGE 60
           MPTFGT YYDSGVGQSS FGR YYNSE G SSTDFGQQYYDLGSDPSSSYMH HGRGRGE
Sbjct: 649 MPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGE 708

Query: 61  HNEYLYYEVPAAVPEQSDEQQQQENAAVPEQSDEQQQQENQEEIQQQRVQSRRRQPARNR 120
           HNEYLYYEVPAAVPEQS+E QQQENAAVP QSDEQQQQENQEEIQQQRVQSRRRQPARNR
Sbjct: 709 HNEYLYYEVPAAVPEQSNELQQQENAAVPGQSDEQQQQENQEEIQQQRVQSRRRQPARNR 768

Query: 121 RRPGCGTH 129
           RRPGCGTH
Sbjct: 769 RRPGCGTH 776

[Close]

BLAST of IVF0003553 vs. NCBI nr
Match: TYK03402.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 241 bits (616), Expect = 1.74e-78
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MPTFGTIYYDSGVGQSSYFGRRYYNSEVGPSSTDFGQQYYDLGSDPSSSYMHDHGRGRGE 60
           MPTFGTIYYDSGVGQSSYFGRRYYNSEVGPSSTDFGQQYYDLGSDPSSSYMHDHGRGRGE
Sbjct: 116 MPTFGTIYYDSGVGQSSYFGRRYYNSEVGPSSTDFGQQYYDLGSDPSSSYMHDHGRGRGE 175

Query: 61  HNEYLYYEVPAAVPEQSDEQQQQENAAVPEQSDEQQQQENQEEIQQQRVQSRRRQPARNR 120
           HNEYLYYEVPAAVPEQSDEQQQQENAAVPEQSDEQQQQENQEEIQQQRVQSRRRQPARNR
Sbjct: 176 HNEYLYYEVPAAVPEQSDEQQQQENAAVPEQSDEQQQQENQEEIQQQRVQSRRRQPARNR 235

Query: 121 RRPGCGTH 128
           RRPGCGTH
Sbjct: 236 RRPGCGTH 243

[Close]

BLAST of IVF0003553 vs. NCBI nr
Match: KAA0050383.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 241 bits (616), Expect = 2.04e-78
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MPTFGTIYYDSGVGQSSYFGRRYYNSEVGPSSTDFGQQYYDLGSDPSSSYMHDHGRGRGE 60
           MPTFGTIYYDSGVGQSSYFGRRYYNSEVGPSSTDFGQQYYDLGSDPSSSYMHDHGRGRGE
Sbjct: 121 MPTFGTIYYDSGVGQSSYFGRRYYNSEVGPSSTDFGQQYYDLGSDPSSSYMHDHGRGRGE 180

Query: 61  HNEYLYYEVPAAVPEQSDEQQQQENAAVPEQSDEQQQQENQEEIQQQRVQSRRRQPARNR 120
           HNEYLYYEVPAAVPEQSDEQQQQENAAVPEQSDEQQQQENQEEIQQQRVQSRRRQPARNR
Sbjct: 181 HNEYLYYEVPAAVPEQSDEQQQQENAAVPEQSDEQQQQENQEEIQQQRVQSRRRQPARNR 240

Query: 121 RRPGCGTH 128
           RRPGCGTH
Sbjct: 241 RRPGCGTH 248

[Close]

BLAST of IVF0003553 vs. NCBI nr
Match: TYK02811.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 218 bits (556), Expect = 5.72e-71
Identity = 119/128 (92.97%), Postives = 120/128 (93.75%), Query Frame = 0


Query: 1   MPTFGTIYYDSGVGQSSYFGRRYYNSEVGPSSTDFGQQYYDLGSDPSSSYMHDHGRGRGE 60
           MPTFGT YYDSGVGQSS FGR YYNSE G SSTDFGQQYYDLGSDPSSSYMH HGRGRGE
Sbjct: 3   MPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGE 62

Query: 61  HNEYLYYEVPAAVPEQSDEQQQQENAAVPEQSDEQQQQENQEEIQQQRVQSRRRQPARNR 120
           HNEYLYYEVPAAVPEQS+E QQQENAAVP QSDEQQQQENQEEIQQQRVQSRRRQPARNR
Sbjct: 63  HNEYLYYEVPAAVPEQSNELQQQENAAVPGQSDEQQQQENQEEIQQQRVQSRRRQPARNR 122

Query: 121 RRPGCGTH 128
           RRPGCGTH
Sbjct: 123 RRPGCGTH 130

[Close]

BLAST of IVF0003553 vs. NCBI nr
Match: KAA0051233.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 225 bits (574), Expect = 5.75e-71
Identity = 121/128 (94.53%), Postives = 122/128 (95.31%), Query Frame = 0


Query: 1   MPTFGTIYYDSGVGQSSYFGRRYYNSEVGPSSTDFGQQYYDLGSDPSSSYMHDHGRGRGE 60
           MPTFGT YYDSGVGQSS FGR YYNSE G SSTDFGQQYYDLGSDPSSSYMHDHGRGRGE
Sbjct: 201 MPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHDHGRGRGE 260

Query: 61  HNEYLYYEVPAAVPEQSDEQQQQENAAVPEQSDEQQQQENQEEIQQQRVQSRRRQPARNR 120
           HNEYLYYEVPAAVP+QSDEQQQQENA VPEQSDEQQQQENQEEIQQQRVQSRRRQPARNR
Sbjct: 261 HNEYLYYEVPAAVPKQSDEQQQQENAVVPEQSDEQQQQENQEEIQQQRVQSRRRQPARNR 320

Query: 121 RRPGCGTH 128
           RRPGCGTH
Sbjct: 321 RRPGCGTH 328

[Close]

BLAST of IVF0003553 vs. NCBI nr
Match: TYK18891.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 218 bits (556), Expect = 3.03e-68
Identity = 119/128 (92.97%), Postives = 120/128 (93.75%), Query Frame = 0


Query: 1   MPTFGTIYYDSGVGQSSYFGRRYYNSEVGPSSTDFGQQYYDLGSDPSSSYMHDHGRGRGE 60
           MPTFGT YYDSGVGQSS FGR YYNSE G SSTDFGQQYYDLGSDPSSSYMH HGRGRGE
Sbjct: 201 MPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGE 260

Query: 61  HNEYLYYEVPAAVPEQSDEQQQQENAAVPEQSDEQQQQENQEEIQQQRVQSRRRQPARNR 120
           HNEYLYYEVPAAVPEQS+E QQQENAAVP QSDEQQQQENQEEIQQQRVQSRRRQPARNR
Sbjct: 261 HNEYLYYEVPAAVPEQSNELQQQENAAVPGQSDEQQQQENQEEIQQQRVQSRRRQPARNR 320

Query: 121 RRPGCGTH 128
           RRPGCGTH
Sbjct: 321 RRPGCGTH 328

The following BLAST results are available for this feature:

BLAST of IVF0003553 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0003553 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BX46	3.0e-61	100.00	GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va...	[more]
A0A5A7U3A2	3.0e-61	100.00	GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va...	[more]
A0A5A7U5S8	2.2e-56	94.53	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]
A0A5D3BSU2	2.7e-54	92.97	GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va...	[more]
A0A5A7SU33	2.7e-54	92.97	Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va...	[more]

BLAST of IVF0003553 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK03402.1	1.74e-78	100.00	GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var....	[more]
KAA0050383.1	2.04e-78	100.00	GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var....	[more]
TYK02811.1	5.72e-71	92.97	GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var....	[more]
KAA0051233.1	5.75e-71	94.53	mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ...	[more]
TYK18891.1	3.03e-68	92.97	mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ...	[more]

BLAST of IVF0003553 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 25..128
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 25..45
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 75..105

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0003553.1	IVF0003553.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010073	meristem maintenance
molecular_function	GO:0008270	zinc ion binding