IVF0003457 (gene) Melon (IVF77) v1

Overview


Name	IVF0003457
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Kinesin-like protein KIN12B
Location	chr03: 20166574 .. 20166768 (-)
RNA-Seq Expression	IVF0003457
Synteny	IVF0003457

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCACCCAGGAAACCCTATTTTGCTATATACCCATGTCGCCGATCCACTGCCATCTTCTATTCCTAGCGCTAACGGCGCCGGAATCAAGGGCGACAGACCCCTCGGAAACCTACGTCGTCTTCCAAAGAAAATGCTTCACCGTCCGATCCCAATTCCATGGTTCCCGATTCCAAACCCTCGCCGACTAAGTTGA

mRNA sequence

ATGCACCCAGGAAACCCTATTTTGCTATATACCCATGTCGCCGATCCACTGCCATCTTCTATTCCTAGCGCTAACGGCGCCGGAATCAAGGGCGACAGACCCCTCGGAAACCTACGTCGTCTTCCAAAGAAAATGCTTCACCGTCCGATCCCAATTCCATGGTTCCCGATTCCAAACCCTCGCCGACTAAGTTGA

Coding sequence (CDS)

ATGCACCCAGGAAACCCTATTTTGCTATATACCCATGTCGCCGATCCACTGCCATCTTCTATTCCTAGCGCTAACGGCGCCGGAATCAAGGGCGACAGACCCCTCGGAAACCTACGTCGTCTTCCAAAGAAAATGCTTCACCGTCCGATCCCAATTCCATGGTTCCCGATTCCAAACCCTCGCCGACTAAGTTGA

Protein sequence

MHPGNPILLYTHVADPLPSSIPSANGAGIKGDRPLGNLRRLPKKMLHRPIPIPWFPIPNPRRLS

Homology

[Close]

BLAST of IVF0003457 vs. ExPASy TrEMBL
Match: A0A5A7TWJ0 (Kinesin-like protein KIN12B OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold149G001820 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 4.1e-27
Identity = 59/63 (93.65%), Postives = 60/63 (95.24%), Query Frame = 0


Query: 1  MHPGNPILLYTHVADPLPSSIPSANGAGIKGDRPLGNLRRLPKKMLHRPIPIPWFPIPNP 60
          MHP NPILLYTHVADPLPSSIPSANGAGIKG RPLGNLRRLPKKMLHRP+PIPWFPIP P
Sbjct: 1  MHPRNPILLYTHVADPLPSSIPSANGAGIKGGRPLGNLRRLPKKMLHRPVPIPWFPIPKP 60

Query: 61 RRL 64
          RRL
Sbjct: 61 RRL 63

[Close]

BLAST of IVF0003457 vs. ExPASy TrEMBL
Match: A0A5A7TTI5 (Kinesin-like protein KIN12B OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold149G001120 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 2.6e-26
Identity = 60/63 (95.24%), Postives = 60/63 (95.24%), Query Frame = 0


Query: 1  MHPGNPILLYTHVADPLPSSIPSANGAGIKGDRPLGNLRRLPKKMLHRPIPIPWFPIPNP 60
          MHP NPILLYTHVADPLPSSIPSANGAGIKG RPLGNLRRLPKKMLHRPIPIP FPIPNP
Sbjct: 1  MHPRNPILLYTHVADPLPSSIPSANGAGIKGGRPLGNLRRLPKKMLHRPIPIPRFPIPNP 60

Query: 61 RRL 64
          RRL
Sbjct: 61 RRL 63

[Close]

BLAST of IVF0003457 vs. ExPASy TrEMBL
Match: A0A5D3D6M1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold75377G00020 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 7.7e-26
Identity = 59/64 (92.19%), Postives = 59/64 (92.19%), Query Frame = 0


Query: 1  MHPGNPILLYTHVADPLPSSIPSANGAGIKGDRPLGNLRRLPKKMLHRPIPIPWFPIPNP 60
          MHP NPILL THVADPLPSSIPSANGAGIK  RPLGNLRRLPKKMLHRPIPIPWFPIPNP
Sbjct: 1  MHPRNPILLCTHVADPLPSSIPSANGAGIKSGRPLGNLRRLPKKMLHRPIPIPWFPIPNP 60

Query: 61 RRLS 65
           RLS
Sbjct: 61 CRLS 64

[Close]

BLAST of IVF0003457 vs. ExPASy TrEMBL
Match: A0A5D3C3G4 (Kinesin-like protein KIN12B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1465G00260 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.0e-14
Identity = 42/51 (82.35%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 1  MHPGNPILLYTHVADPLPSSIPSANGAGIKGDRPLGNLRRLPKKMLHRPIP 52
          +HP NPILL TH+ADPLP SIP ANGAGIKG RPLGNL RLPKKMLHR IP
Sbjct: 4  IHPRNPILLNTHLADPLPFSIPCANGAGIKGGRPLGNLCRLPKKMLHRQIP 54

[Close]

BLAST of IVF0003457 vs. ExPASy TrEMBL
Match: A0A5A7UMK9 (Kinesin-like protein KIN12B OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold406G00630 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 3.1e-11
Identity = 41/64 (64.06%), Postives = 45/64 (70.31%), Query Frame = 0


Query: 1  MHPGNPILLYTHVADPLPSSIPSANGAGIKGDRPLGNLRR-------LPKKMLHRPIP-- 55
          MHP NPILL THVADPLPSSIPSANGAGIK  RPLGNLR+       L +K+    +P  
Sbjct: 1  MHPRNPILLCTHVADPLPSSIPSANGAGIKSGRPLGNLRQPAPSSNPLKRKLSMETVPEN 60

[Close]

BLAST of IVF0003457 vs. NCBI nr
Match: KAA0046426.1 (kinesin-like protein KIN12B [Cucumis melo var. makuwa])

HSP 1 Score: 127 bits (319), Expect = 7.68e-37
Identity = 59/63 (93.65%), Postives = 60/63 (95.24%), Query Frame = 0


Query: 1  MHPGNPILLYTHVADPLPSSIPSANGAGIKGDRPLGNLRRLPKKMLHRPIPIPWFPIPNP 60
          MHP NPILLYTHVADPLPSSIPSANGAGIKG RPLGNLRRLPKKMLHRP+PIPWFPIP P
Sbjct: 1  MHPRNPILLYTHVADPLPSSIPSANGAGIKGGRPLGNLRRLPKKMLHRPVPIPWFPIPKP 60

Query: 61 RRL 63
          RRL
Sbjct: 61 RRL 63

[Close]

BLAST of IVF0003457 vs. NCBI nr
Match: KAA0046374.1 (kinesin-like protein KIN12B [Cucumis melo var. makuwa] >KAA0046381.1 kinesin-like protein KIN12B [Cucumis melo var. makuwa])

HSP 1 Score: 124 bits (312), Expect = 8.99e-36
Identity = 60/63 (95.24%), Postives = 60/63 (95.24%), Query Frame = 0


Query: 1  MHPGNPILLYTHVADPLPSSIPSANGAGIKGDRPLGNLRRLPKKMLHRPIPIPWFPIPNP 60
          MHP NPILLYTHVADPLPSSIPSANGAGIKG RPLGNLRRLPKKMLHRPIPIP FPIPNP
Sbjct: 1  MHPRNPILLYTHVADPLPSSIPSANGAGIKGGRPLGNLRRLPKKMLHRPIPIPRFPIPNP 60

Query: 61 RRL 63
          RRL
Sbjct: 61 RRL 63

[Close]

BLAST of IVF0003457 vs. NCBI nr
Match: TYK19211.1 (hypothetical protein E5676_scaffold75377G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 123 bits (308), Expect = 3.67e-35
Identity = 59/64 (92.19%), Postives = 59/64 (92.19%), Query Frame = 0


Query: 1  MHPGNPILLYTHVADPLPSSIPSANGAGIKGDRPLGNLRRLPKKMLHRPIPIPWFPIPNP 60
          MHP NPILL THVADPLPSSIPSANGAGIK  RPLGNLRRLPKKMLHRPIPIPWFPIPNP
Sbjct: 1  MHPRNPILLCTHVADPLPSSIPSANGAGIKSGRPLGNLRRLPKKMLHRPIPIPWFPIPNP 60

Query: 61 RRLS 64
           RLS
Sbjct: 61 CRLS 64

[Close]

BLAST of IVF0003457 vs. NCBI nr
Match: TYK05870.1 (kinesin-like protein KIN12B [Cucumis melo var. makuwa])

HSP 1 Score: 85.9 bits (211), Expect = 7.64e-20
Identity = 42/51 (82.35%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 1  MHPGNPILLYTHVADPLPSSIPSANGAGIKGDRPLGNLRRLPKKMLHRPIP 51
          +HP NPILL TH+ADPLP SIP ANGAGIKG RPLGNL RLPKKMLHR IP
Sbjct: 4  IHPRNPILLNTHLADPLPFSIPCANGAGIKGGRPLGNLCRLPKKMLHRQIP 54

[Close]

BLAST of IVF0003457 vs. NCBI nr
Match: KAA0031762.1 (kinesin-like protein KIN12B [Cucumis melo var. makuwa] >KAA0054855.1 kinesin-like protein KIN12B [Cucumis melo var. makuwa])

HSP 1 Score: 74.7 bits (182), Expect = 2.15e-15
Identity = 41/65 (63.08%), Postives = 45/65 (69.23%), Query Frame = 0


Query: 1  MHPGNPILLYTHVADPLPSSIPSANGAGIKGDRPLGNLRR-------LPKKMLHRPIP-- 55
          MHP NPILL THVADPLPSSIPSANGAGIK  RPLGNLR+       L +K+    +P  
Sbjct: 1  MHPRNPILLCTHVADPLPSSIPSANGAGIKSGRPLGNLRQPAPSSNPLKRKLSMETVPEN 60

The following BLAST results are available for this feature:

BLAST of IVF0003457 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0003457 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TWJ0	4.1e-27	93.65	Kinesin-like protein KIN12B OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A5A7TTI5	2.6e-26	95.24	Kinesin-like protein KIN12B OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A5D3D6M1	7.7e-26	92.19	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3C3G4	1.0e-14	82.35	Kinesin-like protein KIN12B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5A7UMK9	3.1e-11	64.06	Kinesin-like protein KIN12B OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]

BLAST of IVF0003457 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0046426.1	7.68e-37	93.65	kinesin-like protein KIN12B [Cucumis melo var. makuwa]	[more]
KAA0046374.1	8.99e-36	95.24	kinesin-like protein KIN12B [Cucumis melo var. makuwa] >KAA0046381.1 kinesin-lik...	[more]
TYK19211.1	3.67e-35	92.19	hypothetical protein E5676_scaffold75377G00020 [Cucumis melo var. makuwa]	[more]
TYK05870.1	7.64e-20	82.35	kinesin-like protein KIN12B [Cucumis melo var. makuwa]	[more]
KAA0031762.1	2.15e-15	63.08	kinesin-like protein KIN12B [Cucumis melo var. makuwa] >KAA0054855.1 kinesin-lik...	[more]

BLAST of IVF0003457 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0003457.1	IVF0003457.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006096	glycolytic process
biological_process	GO:0007018	microtubule-based movement
cellular_component	GO:0005871	kinesin complex
cellular_component	GO:0005874	microtubule
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016887	ATP hydrolysis activity
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0000287	magnesium ion binding
molecular_function	GO:0008017	microtubule binding
molecular_function	GO:0008574	plus-end-directed microtubule motor activity
molecular_function	GO:0030955	potassium ion binding
molecular_function	GO:0004743	pyruvate kinase activity