IVF0003292 (gene) Melon (IVF77) v1

Overview


Name	IVF0003292
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	30S ribosomal protein S21
Location	chr12: 23110201 .. 23111904 (-)
RNA-Seq Expression	IVF0003292
Synteny	IVF0003292

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCAAAACCTACGTTTCACCAACGCGACTTAGGCCCGGCCACCGGTCCGAAGAGGAAGTGGAAGACGGACCACCGGTGAGTCGCCATGGCCGCCGCTGCAACTTCATCTATCACGAATTTCTTCTCCTTCCTCTCCATCTCGAAATCATCACAAATACACCATAACTCCGTCTCTATAAACTTCCAGTCTCTTCCAAAGTCTAAACAGACCCGGTTGTTTGCCTCCAGGGGTAATGTTGCATCTTCTTCCCAAGAACCTAAGGGTGTTTCCTCACGCATTTTAAATTATAATGTTCTGATCACCGTGGGTGAGAACGAGTCTGAAGACCAGGTGGTGAATCGGTTTAGGACACAGGTCTTGAGAGCAGGAATTTTGCAGGAGTGTAAGAGGAGAAGATTTTTCGAAAATAGCCAGGCAAAGAGAAAGAGGAAAGCTAGGGAAGCTGCTAAGAGGAATCGCAAGAGGTTAGCTGATCTCATTTCTAAAGCAAAATCAGATGAGTTTTTCATGGCTGAATTTGGTTTCTGTGAGATTGTGTTGTTTTTAATCTTCTTTCTTCTTCACTATGGTTGAATGGTCTATTTTCTTTCATTTTCTTTGCAACCAAATAGTTGATTTCGATATCAACTTCTTAGTTGTCTCCCTCTTTCAAATGCTGAATACAAATCTTGGGGTTCCTTGATCCACGAGCATCACCACTGTTCTTCTTGATTTCATTTTCCCCTCTTCCTTTTTTAATCTTCCGTAACATTTTCTAGAACTCAGAAGCCAGCTTCAGATTGATCAATATCAATTCAAAGAATTAGTCTACTCAAAATTTCTTCCATTTTAGTGGGAAAGGGAAACAGGGGATAGTGAAGATTGTTCAATTACAGGTTGAAACTTGAGTAAAAGTTATCATAAAAAAGGGAAACTAGATGGTTGAAAATATCTGAAATTAGCTGTGAAGAAACAGCTTAAAGTGAAAGATGCTGCTTAGTTACAATACAAGGTGACCCATGATTGGTATTGAGGTTATTGGTACAGAAAGCCACTTCTATGATTAGTGAGAGTTTTTCAGCTCTAATTTGAATTGTCTAAATAATTCTGATGTAAGGAAGAAAATTTCTTATGATGCCCCATAAAATCATGTAAACTGGATTTCAATGTTATTCAGATCTGCTCCTCTTGCGGGTTGTGTTGCTTGCTGCAAACATCCCAAATTGTTGCGACTTGATTGAATCTGTCTTAACTCTCCTTGGGTTCTGTGTTTTAAAATAATGGAGAATGGAAAAAATGTAGATTATTTCATTCAGATTTTTGTGTTGCCATTTTTTAATGCAAGCAATGGTTTAAAGTATATGTGATTCTCCAACTGCAGAAGGTTTAGGAGGCCTCAGTCAACAACTGAGAAGCAGCCAGACAAGAAAACCCCTGAGAGTAAGAATAAAGATGAGGAAGATGACAACTGGGACTTTTACCAAGTAGACCTTCCATACAGTTCATAAAGGTCGCTCTGCCTTGAAAGAATGAAACTAATATCTGTAATGGATGAGAGGAATTATTAGATGTTTAGTGTATTTTACTTGATATTATTTAGTTTAGTTGGTAATTTAGAATTAGTTAGTAAATTGTCAAAGCTATAAATAGCTACTTTAGGTTGTAATGTGAAGCTTTTTAAATACCGTTTGGAAAATAGAATTGTTCTTAGAGAACTCTCTTTG

mRNA sequence

CTCAAAACCTACGTTTCACCAACGCGACTTAGGCCCGGCCACCGGTCCGAAGAGGAAGTGGAAGACGGACCACCGGTGAGTCGCCATGGCCGCCGCTGCAACTTCATCTATCACGAATTTCTTCTCCTTCCTCTCCATCTCGAAATCATCACAAATACACCATAACTCCGTCTCTATAAACTTCCAGTCTCTTCCAAAGTCTAAACAGACCCGGTTGTTTGCCTCCAGGGGTAATGTTGCATCTTCTTCCCAAGAACCTAAGGGTGTTTCCTCACGCATTTTAAATTATAATGTTCTGATCACCGTGGGTGAGAACGAGTCTGAAGACCAGGTGGTGAATCGGTTTAGGACACAGGTCTTGAGAGCAGGAATTTTGCAGGAGTGTAAGAGGAGAAGATTTTTCGAAAATAGCCAGGCAAAGAGAAAGAGGAAAGCTAGGGAAGCTGCTAAGAGGAATCGCAAGAGAAGGTTTAGGAGGCCTCAGTCAACAACTGAGAAGCAGCCAGACAAGAAAACCCCTGAGAGTAAGAATAAAGATGAGGAAGATGACAACTGGGACTTTTACCAAGTAGACCTTCCATACAGTTCATAAAGGTCGCTCTGCCTTGAAAGAATGAAACTAATATCTGTAATGGATGAGAGGAATTATTAGATGTTTAGTGTATTTTACTTGATATTATTTAGTTTAGTTGGTAATTTAGAATTAGTTAGTAAATTGTCAAAGCTATAAATAGCTACTTTAGGTTGTAATGTGAAGCTTTTTAAATACCGTTTGGAAAATAGAATTGTTCTTAGAGAACTCTCTTTG

Coding sequence (CDS)

ATGGCCGCCGCTGCAACTTCATCTATCACGAATTTCTTCTCCTTCCTCTCCATCTCGAAATCATCACAAATACACCATAACTCCGTCTCTATAAACTTCCAGTCTCTTCCAAAGTCTAAACAGACCCGGTTGTTTGCCTCCAGGGGTAATGTTGCATCTTCTTCCCAAGAACCTAAGGGTGTTTCCTCACGCATTTTAAATTATAATGTTCTGATCACCGTGGGTGAGAACGAGTCTGAAGACCAGGTGGTGAATCGGTTTAGGACACAGGTCTTGAGAGCAGGAATTTTGCAGGAGTGTAAGAGGAGAAGATTTTTCGAAAATAGCCAGGCAAAGAGAAAGAGGAAAGCTAGGGAAGCTGCTAAGAGGAATCGCAAGAGAAGGTTTAGGAGGCCTCAGTCAACAACTGAGAAGCAGCCAGACAAGAAAACCCCTGAGAGTAAGAATAAAGATGAGGAAGATGACAACTGGGACTTTTACCAAGTAGACCTTCCATACAGTTCATAA

Protein sequence

MAAAATSSITNFFSFLSISKSSQIHHNSVSINFQSLPKSKQTRLFASRGNVASSSQEPKGVSSRILNYNVLITVGENESEDQVVNRFRTQVLRAGILQECKRRRFFENSQAKRKRKAREAAKRNRKRRFRRPQSTTEKQPDKKTPESKNKDEEDDNWDFYQVDLPYSS

Homology

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BLAST of IVF0003292 vs. ExPASy Swiss-Prot
Match: P82024 (30S ribosomal protein S21, chloroplastic OS=Spinacia oleracea OX=3562 GN=rps21 PE=1 SV=2)

HSP 1 Score: 75.5 bits (184), Expect = 6.5e-13
Identity = 67/185 (36.22%), Postives = 100/185 (54.05%), Query Frame = 0


Query: 4   AATSSITNFFSFLSISKSS---------------QIHHNSVSINFQSLPKSKQTRLFASR 63
           A+TSS+ NF S L  S +S                   NS+SI+ +    +   +     
Sbjct: 2   ASTSSLLNFLSPLFPSNTSLPPSSNPKFPNPNSLSSQQNSISISSKKHENAAIAKKEEYP 61

Query: 64  GNVASSSQEPKGVSSRIL---NYNVLITVGENESEDQVVNRFRTQVLRAGILQECKRRRF 123
           G++ +        S+ +     YNV + V +NE+E++++NRFR +V+RAG++QECKRRR+
Sbjct: 62  GDLMAVVCPSLAFSNTLYFRSAYNVQVLVDDNENEERLLNRFRREVMRAGVIQECKRRRY 121

Query: 124 FENSQAKRKRKAREAAKRNRKRR---FRRPQSTTEKQPDKKTPESKNKDEED-DNWDFYQ 167
           FEN Q ++KRK REAAKRN +RR   FR P       P K+     +K E+D DNWD  +
Sbjct: 122 FENKQEEKKRKHREAAKRNSRRRRGPFRGP------FPGKEEATKVDKKEDDGDNWDMPE 180

[Close]

BLAST of IVF0003292 vs. ExPASy Swiss-Prot
Match: Q7NHA1 (30S ribosomal protein S21 2 OS=Gloeobacter violaceus (strain ATCC 29082 / PCC 7421) OX=251221 GN=rpsU2 PE=3 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.9e-04
Identity = 26/54 (48.15%), Postives = 36/54 (66.67%), Query Frame = 0


Query: 72  ITVGENESEDQVVNRFRTQVLRAGILQECKRRRFFENSQAKRKRKAREAAKRNR 126
           + +GENES +  + RF+ ++ +AGIL E KRR  +E   A+RKRKA  A KR R
Sbjct: 4   VRLGENESIESALKRFKKKIQKAGILSEIKRRERYEKPSARRKRKAEAARKRRR 57

[Close]

BLAST of IVF0003292 vs. ExPASy Swiss-Prot
Match: Q8RB59 (30S ribosomal protein S21 OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) OX=273068 GN=rpsU PE=3 SV=2)

HSP 1 Score: 46.6 bits (109), Expect = 3.2e-04
Identity = 26/55 (47.27%), Postives = 35/55 (63.64%), Query Frame = 0


Query: 72  ITVGENESEDQVVNRFRTQVLRAGILQECKRRRFFENSQAKRKRKAREAAKRNRK 127
           + VGENES D  + RFR Q  +AG+L E ++R  +E+   KRK+KA  A KR  K
Sbjct: 4   VRVGENESLDSALRRFRRQCSKAGVLSELRKREHYESPSVKRKKKAEAARKRKYK 58

[Close]

BLAST of IVF0003292 vs. ExPASy Swiss-Prot
Match: Q8DMS3 (30S ribosomal protein S21 OS=Thermosynechococcus elongatus (strain BP-1) OX=197221 GN=rpsU PE=3 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 5.5e-04
Identity = 25/54 (46.30%), Postives = 35/54 (64.81%), Query Frame = 0


Query: 72  ITVGENESEDQVVNRFRTQVLRAGILQECKRRRFFENSQAKRKRKAREAAKRNR 126
           + +GENES +  + RF+ ++ +AGIL E KRR  +E    +RKRK   A KRNR
Sbjct: 4   VRLGENESIESALRRFKKKIQKAGILSEVKRRERYEKPSLRRKRKQEAARKRNR 57

[Close]

BLAST of IVF0003292 vs. ExPASy Swiss-Prot
Match: Q2JM43 (30S ribosomal protein S21 OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) OX=321332 GN=rpsU PE=3 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 7.2e-04
Identity = 26/56 (46.43%), Postives = 39/56 (69.64%), Query Frame = 0


Query: 72  ITVGENESEDQVVNRFRTQVLRAGILQECKRRRFFENSQAKRKRKAREAAKRNRKR 128
           +T+GENE  +  + RF+ QV +AGIL++ +  R FE +  KRKRKA  A +RNR++
Sbjct: 4   VTIGENEGIESALRRFKRQVSKAGILRDLRNHRHFETNLEKRKRKA-VAVRRNRRK 58

[Close]

BLAST of IVF0003292 vs. ExPASy TrEMBL
Match: E5GBW8 (Structural constituent of ribosome OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 305.1 bits (780), Expect = 1.9e-79
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 1   MAAAATSSITNFFSFLSISKSSQIHHNSVSINFQSLPKSKQTRLFASRGNVASSSQEPKG 60
           MAAAATSSITNFFSFLSISKSSQIHHNSVSINFQSLPKSKQTRLFASRGNVASSSQEPKG
Sbjct: 1   MAAAATSSITNFFSFLSISKSSQIHHNSVSINFQSLPKSKQTRLFASRGNVASSSQEPKG 60

Query: 61  VSSRILNYNVLITVGENESEDQVVNRFRTQVLRAGILQECKRRRFFENSQAKRKRKAREA 120
           VSSRILNYNVLITVGENESEDQVVNRFRTQVLRAGILQECKRRRFFENSQAKRKRKAREA
Sbjct: 61  VSSRILNYNVLITVGENESEDQVVNRFRTQVLRAGILQECKRRRFFENSQAKRKRKAREA 120

Query: 121 AKRNRKRRFRRPQSTTEKQPDKKTPESKNKDEEDDNWDFYQVDLPYSS 169
           AKRNRKRRFRRPQSTTEKQPDKKTPESKNKDEEDDNWDFYQVDLPYSS
Sbjct: 121 AKRNRKRRFRRPQSTTEKQPDKKTPESKNKDEEDDNWDFYQVDLPYSS 168

[Close]

BLAST of IVF0003292 vs. ExPASy TrEMBL
Match: A0A1S3AZ70 (uncharacterized protein LOC103484145 OS=Cucumis melo OX=3656 GN=LOC103484145 PE=3 SV=1)

HSP 1 Score: 305.1 bits (780), Expect = 1.9e-79
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 1   MAAAATSSITNFFSFLSISKSSQIHHNSVSINFQSLPKSKQTRLFASRGNVASSSQEPKG 60
           MAAAATSSITNFFSFLSISKSSQIHHNSVSINFQSLPKSKQTRLFASRGNVASSSQEPKG
Sbjct: 1   MAAAATSSITNFFSFLSISKSSQIHHNSVSINFQSLPKSKQTRLFASRGNVASSSQEPKG 60

Query: 61  VSSRILNYNVLITVGENESEDQVVNRFRTQVLRAGILQECKRRRFFENSQAKRKRKAREA 120
           VSSRILNYNVLITVGENESEDQVVNRFRTQVLRAGILQECKRRRFFENSQAKRKRKAREA
Sbjct: 61  VSSRILNYNVLITVGENESEDQVVNRFRTQVLRAGILQECKRRRFFENSQAKRKRKAREA 120

Query: 121 AKRNRKRRFRRPQSTTEKQPDKKTPESKNKDEEDDNWDFYQVDLPYSS 169
           AKRNRKRRFRRPQSTTEKQPDKKTPESKNKDEEDDNWDFYQVDLPYSS
Sbjct: 121 AKRNRKRRFRRPQSTTEKQPDKKTPESKNKDEEDDNWDFYQVDLPYSS 168

[Close]

BLAST of IVF0003292 vs. ExPASy TrEMBL
Match: A0A5A7UHJ6 (Ribosomal_S21 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold80G001450 PE=3 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 1.7e-72
Identity = 168/217 (77.42%), Postives = 168/217 (77.42%), Query Frame = 0


Query: 1   MAAAATSSITNFFSFLSISKSSQIHHNSVSINFQSLPKSKQTRLFASRGNVASSSQEPKG 60
           MAAAATSSITNFFSFLSISKSSQIHHNSVSINFQSLPKSKQTRLFASRGNVASSSQEPKG
Sbjct: 1   MAAAATSSITNFFSFLSISKSSQIHHNSVSINFQSLPKSKQTRLFASRGNVASSSQEPKG 60

Query: 61  VSSRILNYNVLITVGENESEDQVVNRFRTQVLRAGILQECKRRRFFENSQAKRKRKAREA 120
           VSSRILNYNVLITVGENESEDQVVNRFRTQVLRAGILQECKRRRFFENSQAKRKRKAREA
Sbjct: 61  VSSRILNYNVLITVGENESEDQVVNRFRTQVLRAGILQECKRRRFFENSQAKRKRKAREA 120

Query: 121 AKRNRKR-------------------------------------------------RFRR 169
           AKRNRKR                                                 RFRR
Sbjct: 121 AKRNRKRLADLISKEKSDEFFMAEFGFYLLLLRVVLLAANIPNCCDLIESVLTLLGRFRR 180

[Close]

BLAST of IVF0003292 vs. ExPASy TrEMBL
Match: A0A5D3BJF5 (Putative Ribosomal protein S21 family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G004370 PE=3 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 1.7e-72
Identity = 168/217 (77.42%), Postives = 168/217 (77.42%), Query Frame = 0


Query: 1   MAAAATSSITNFFSFLSISKSSQIHHNSVSINFQSLPKSKQTRLFASRGNVASSSQEPKG 60
           MAAAATSSITNFFSFLSISKSSQIHHNSVSINFQSLPKSKQTRLFASRGNVASSSQEPKG
Sbjct: 1   MAAAATSSITNFFSFLSISKSSQIHHNSVSINFQSLPKSKQTRLFASRGNVASSSQEPKG 60

Query: 61  VSSRILNYNVLITVGENESEDQVVNRFRTQVLRAGILQECKRRRFFENSQAKRKRKAREA 120
           VSSRILNYNVLITVGENESEDQVVNRFRTQVLRAGILQECKRRRFFENSQAKRKRKAREA
Sbjct: 61  VSSRILNYNVLITVGENESEDQVVNRFRTQVLRAGILQECKRRRFFENSQAKRKRKAREA 120

Query: 121 AKRNRKR-------------------------------------------------RFRR 169
           AKRNRKR                                                 RFRR
Sbjct: 121 AKRNRKRLADLISKAKSDEFFMAEFGFYLLLLRVVLLAANIPNCCDLIESVLTLLGRFRR 180

[Close]

BLAST of IVF0003292 vs. ExPASy TrEMBL
Match: A0A0A0LWJ6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050150 PE=3 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 4.9e-72
Identity = 155/167 (92.81%), Postives = 159/167 (95.21%), Query Frame = 0


Query: 1   MAAAATSSITNFFSFLSISKSSQIHHNSVSINFQSLPKSKQTRLFASRGNVASSSQEPKG 60
           MAAAATSSITNFFSFLSISKSSQIHHNSVSIN QSLP SK TRLFASRGNVASSSQEPKG
Sbjct: 1   MAAAATSSITNFFSFLSISKSSQIHHNSVSINLQSLPNSKLTRLFASRGNVASSSQEPKG 60

Query: 61  VSSRILNYNVLITVGENESEDQVVNRFRTQVLRAGILQECKRRRFFENSQAKRKRKAREA 120
           V  RILNYN+LITVGENESEDQVVNRFR QVLRAGILQECKRRRFFENSQAKRKRKAREA
Sbjct: 61  VPLRILNYNILITVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREA 120

Query: 121 AKRNRKRRFRRPQSTTEKQPDKKTPESKNKDEEDDNWDFYQVDLPYS 168
           AKRNRKRRFRRPQS T +QPD+KTPESKN+DEEDDNWDFYQVDLPYS
Sbjct: 121 AKRNRKRRFRRPQSITGEQPDQKTPESKNRDEEDDNWDFYQVDLPYS 167

[Close]

BLAST of IVF0003292 vs. NCBI nr
Match: XP_008439325.1 (PREDICTED: uncharacterized protein LOC103484145 [Cucumis melo] >ADN33967.1 structural constituent of ribosome [Cucumis melo subsp. melo])

HSP 1 Score: 305 bits (781), Expect = 5.22e-104
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 1   MAAAATSSITNFFSFLSISKSSQIHHNSVSINFQSLPKSKQTRLFASRGNVASSSQEPKG 60
           MAAAATSSITNFFSFLSISKSSQIHHNSVSINFQSLPKSKQTRLFASRGNVASSSQEPKG
Sbjct: 1   MAAAATSSITNFFSFLSISKSSQIHHNSVSINFQSLPKSKQTRLFASRGNVASSSQEPKG 60

Query: 61  VSSRILNYNVLITVGENESEDQVVNRFRTQVLRAGILQECKRRRFFENSQAKRKRKAREA 120
           VSSRILNYNVLITVGENESEDQVVNRFRTQVLRAGILQECKRRRFFENSQAKRKRKAREA
Sbjct: 61  VSSRILNYNVLITVGENESEDQVVNRFRTQVLRAGILQECKRRRFFENSQAKRKRKAREA 120

Query: 121 AKRNRKRRFRRPQSTTEKQPDKKTPESKNKDEEDDNWDFYQVDLPYSS 168
           AKRNRKRRFRRPQSTTEKQPDKKTPESKNKDEEDDNWDFYQVDLPYSS
Sbjct: 121 AKRNRKRRFRRPQSTTEKQPDKKTPESKNKDEEDDNWDFYQVDLPYSS 168

[Close]

BLAST of IVF0003292 vs. NCBI nr
Match: XP_004152510.2 (30S ribosomal protein S21, chloroplastic [Cucumis sativus] >KGN64376.1 hypothetical protein Csa_014065 [Cucumis sativus])

HSP 1 Score: 280 bits (717), Expect = 2.97e-94
Identity = 155/167 (92.81%), Postives = 159/167 (95.21%), Query Frame = 0


Query: 1   MAAAATSSITNFFSFLSISKSSQIHHNSVSINFQSLPKSKQTRLFASRGNVASSSQEPKG 60
           MAAAATSSITNFFSFLSISKSSQIHHNSVSIN QSLP SK TRLFASRGNVASSSQEPKG
Sbjct: 1   MAAAATSSITNFFSFLSISKSSQIHHNSVSINLQSLPNSKLTRLFASRGNVASSSQEPKG 60

Query: 61  VSSRILNYNVLITVGENESEDQVVNRFRTQVLRAGILQECKRRRFFENSQAKRKRKAREA 120
           V  RILNYN+LITVGENESEDQVVNRFR QVLRAGILQECKRRRFFENSQAKRKRKAREA
Sbjct: 61  VPLRILNYNILITVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREA 120

Query: 121 AKRNRKRRFRRPQSTTEKQPDKKTPESKNKDEEDDNWDFYQVDLPYS 167
           AKRNRKRRFRRPQS T +QPD+KTPESKN+DEEDDNWDFYQVDLPYS
Sbjct: 121 AKRNRKRRFRRPQSITGEQPDQKTPESKNRDEEDDNWDFYQVDLPYS 167

[Close]

BLAST of IVF0003292 vs. NCBI nr
Match: KAA0055302.1 (Ribosomal_S21 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 282 bits (721), Expect = 3.91e-94
Identity = 168/217 (77.42%), Postives = 168/217 (77.42%), Query Frame = 0


Query: 1   MAAAATSSITNFFSFLSISKSSQIHHNSVSINFQSLPKSKQTRLFASRGNVASSSQEPKG 60
           MAAAATSSITNFFSFLSISKSSQIHHNSVSINFQSLPKSKQTRLFASRGNVASSSQEPKG
Sbjct: 1   MAAAATSSITNFFSFLSISKSSQIHHNSVSINFQSLPKSKQTRLFASRGNVASSSQEPKG 60

Query: 61  VSSRILNYNVLITVGENESEDQVVNRFRTQVLRAGILQECKRRRFFENSQAKRKRKAREA 120
           VSSRILNYNVLITVGENESEDQVVNRFRTQVLRAGILQECKRRRFFENSQAKRKRKAREA
Sbjct: 61  VSSRILNYNVLITVGENESEDQVVNRFRTQVLRAGILQECKRRRFFENSQAKRKRKAREA 120

Query: 121 AKRNRKR-------------------------------------------------RFRR 168
           AKRNRKR                                                 RFRR
Sbjct: 121 AKRNRKRLADLISKEKSDEFFMAEFGFYLLLLRVVLLAANIPNCCDLIESVLTLLGRFRR 180

[Close]

BLAST of IVF0003292 vs. NCBI nr
Match: TYJ99226.1 (putative Ribosomal protein S21 family protein [Cucumis melo var. makuwa])

HSP 1 Score: 282 bits (721), Expect = 3.91e-94
Identity = 168/217 (77.42%), Postives = 168/217 (77.42%), Query Frame = 0


Query: 1   MAAAATSSITNFFSFLSISKSSQIHHNSVSINFQSLPKSKQTRLFASRGNVASSSQEPKG 60
           MAAAATSSITNFFSFLSISKSSQIHHNSVSINFQSLPKSKQTRLFASRGNVASSSQEPKG
Sbjct: 1   MAAAATSSITNFFSFLSISKSSQIHHNSVSINFQSLPKSKQTRLFASRGNVASSSQEPKG 60

Query: 61  VSSRILNYNVLITVGENESEDQVVNRFRTQVLRAGILQECKRRRFFENSQAKRKRKAREA 120
           VSSRILNYNVLITVGENESEDQVVNRFRTQVLRAGILQECKRRRFFENSQAKRKRKAREA
Sbjct: 61  VSSRILNYNVLITVGENESEDQVVNRFRTQVLRAGILQECKRRRFFENSQAKRKRKAREA 120

Query: 121 AKRNRKR-------------------------------------------------RFRR 168
           AKRNRKR                                                 RFRR
Sbjct: 121 AKRNRKRLADLISKAKSDEFFMAEFGFYLLLLRVVLLAANIPNCCDLIESVLTLLGRFRR 180

[Close]

BLAST of IVF0003292 vs. NCBI nr
Match: XP_038894121.1 (30S ribosomal protein S21, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 253 bits (647), Expect = 1.38e-83
Identity = 142/168 (84.52%), Postives = 151/168 (89.88%), Query Frame = 0


Query: 1   MAAAATSSITNFFSFLSISKSSQIHHNSVSINFQSLPKSKQTRLFASRGNVASSSQEPKG 60
           MAAAATSS+T FFS LSISKSSQIHHNSVSIN QSLPKSK  RLFA+RG+V  SSQEPKG
Sbjct: 1   MAAAATSSLTKFFSSLSISKSSQIHHNSVSINLQSLPKSKPARLFATRGSVTPSSQEPKG 60

Query: 61  VSSRILNYNVLITVGENESEDQVVNRFRTQVLRAGILQECKRRRFFENSQAKRKRKAREA 120
           V S +  YNVLITVGENESEDQ+VNRFR QVLRAGILQECKRRRFFENSQAKRKRKAREA
Sbjct: 61  VFSGMRIYNVLITVGENESEDQLVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREA 120

Query: 121 AKRNRKRRFRRPQSTTEKQPDKKTPESKNKDEEDDNWDFYQVDLPYSS 168
           AKRNRKR FRRPQS  E+QP+KKTP+ KN+DEEDDNWDFYQVDLPY S
Sbjct: 121 AKRNRKRWFRRPQSRAEEQPNKKTPQRKNRDEEDDNWDFYQVDLPYCS 168

[Close]

BLAST of IVF0003292 vs. TAIR 10
Match: AT3G27160.1 (Ribosomal protein S21 family protein )

HSP 1 Score: 89.0 bits (219), Expect = 4.0e-18
Identity = 67/181 (37.02%), Postives = 102/181 (56.35%), Query Frame = 0


Query: 4   AATSSITNFFSFLSISKS-----------------SQIHHNSVSINFQSLPKSKQT--RL 63
           AA+ S+T+F SF+S  KS                 SQ   N ++I   ++ ++  T   L
Sbjct: 2   AASFSLTSFISFISPFKSQTKPTPPPNLTLPSPTISQRRRNDLAIESMAVEETSSTASSL 61

Query: 64  FASRGNVASSSQEPKGVSSRILNYNVLITVGENESEDQVVNRFRTQVLRAGILQECKRRR 123
            +   +V   S            YNV + V +NESE+++VNRFR +V+R G++QECKRRR
Sbjct: 62  SSELASVICPSLAYSNTLFFSSGYNVQVFVEDNESEERLVNRFRREVMRTGVIQECKRRR 121

Query: 124 FFENSQAKRKRKAREAAKRNRKRRFRRPQSTTEKQPDKKTPESKNKDEEDDNWDFYQVDL 166
           +FEN Q ++KR+ R+AAKRN+KRR +   +   ++      +SK KDEE+DNW+    D+
Sbjct: 122 YFENKQDEKKRRTRDAAKRNKKRRPQARFTQETREEAAAATKSKKKDEEEDNWEMPGGDV 181

[Close]

BLAST of IVF0003292 vs. TAIR 10
Match: AT5G63300.1 (Ribosomal protein S21 family protein )

HSP 1 Score: 67.8 bits (164), Expect = 9.6e-12
Identity = 43/104 (41.35%), Postives = 68/104 (65.38%), Query Frame = 0


Query: 68  YNVLITVGENESEDQVVNRFRTQVLRAGILQECKRRRFFENSQAKRKRKAREAAKRNRKR 127
           YNV +   + ESE+Q+VN F+    RAG+LQE +RRRFFE+S  K+ RK +EAAK+ RKR
Sbjct: 80  YNVEVVPKDGESEEQLVNDFKRSCFRAGVLQESRRRRFFESSLEKKTRKTKEAAKKYRKR 139

Query: 128 RFR-RPQSTTEKQPDKKTPESKNKDEEDDNWDF--YQVDLPYSS 169
           R   +P+  +  +  K    +  +DE+DD+W+     +++PY++
Sbjct: 140 RPNPKPKPLSTSEIRKHNRNASREDEQDDHWELPPEDIEIPYTN 183

[Close]

BLAST of IVF0003292 vs. TAIR 10
Match: AT5G63300.2 (Ribosomal protein S21 family protein )

HSP 1 Score: 59.7 bits (143), Expect = 2.6e-09
Identity = 33/60 (55.00%), Postives = 44/60 (73.33%), Query Frame = 0


Query: 68  YNVLITVGENESEDQVVNRFRTQVLRAGILQECKRRRFFENSQAKRKRKAREAAKRNRKR 127
           YNV +   + ESE+Q+VN F+    RAG+LQE +RRRFFE+S  K+ RK +EAAK+ RKR
Sbjct: 80  YNVEVVPKDGESEEQLVNDFKRSCFRAGVLQESRRRRFFESSLEKKTRKTKEAAKKYRKR 139

The following BLAST results are available for this feature:

BLAST of IVF0003292 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P82024	6.5e-13	36.22	30S ribosomal protein S21, chloroplastic OS=Spinacia oleracea OX=3562 GN=rps21 P...	[more]
Q7NHA1	1.9e-04	48.15	30S ribosomal protein S21 2 OS=Gloeobacter violaceus (strain ATCC 29082 / PCC 74...	[more]
Q8RB59	3.2e-04	47.27	30S ribosomal protein S21 OS=Caldanaerobacter subterraneus subsp. tengcongensis ...	[more]
Q8DMS3	5.5e-04	46.30	30S ribosomal protein S21 OS=Thermosynechococcus elongatus (strain BP-1) OX=1972...	[more]
Q2JM43	7.2e-04	46.43	30S ribosomal protein S21 OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) OX=32133...	[more]

BLAST of IVF0003292 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
E5GBW8	1.9e-79	100.00	Structural constituent of ribosome OS=Cucumis melo subsp. melo OX=412675 PE=3 SV...	[more]
A0A1S3AZ70	1.9e-79	100.00	uncharacterized protein LOC103484145 OS=Cucumis melo OX=3656 GN=LOC103484145 PE=...	[more]
A0A5A7UHJ6	1.7e-72	77.42	Ribosomal_S21 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5D3BJF5	1.7e-72	77.42	Putative Ribosomal protein S21 family protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A0A0LWJ6	4.9e-72	92.81	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050150 PE=3 SV=1	[more]

BLAST of IVF0003292 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008439325.1	5.22e-104	100.00	PREDICTED: uncharacterized protein LOC103484145 [Cucumis melo] >ADN33967.1 struc...	[more]
XP_004152510.2	2.97e-94	92.81	30S ribosomal protein S21, chloroplastic [Cucumis sativus] >KGN64376.1 hypotheti...	[more]
KAA0055302.1	3.91e-94	77.42	Ribosomal_S21 domain-containing protein [Cucumis melo var. makuwa]	[more]
TYJ99226.1	3.91e-94	77.42	putative Ribosomal protein S21 family protein [Cucumis melo var. makuwa]	[more]
XP_038894121.1	1.38e-83	84.52	30S ribosomal protein S21, chloroplastic-like [Benincasa hispida]	[more]

BLAST of IVF0003292 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G27160.1	4.0e-18	37.02	Ribosomal protein S21 family protein	[more]
AT5G63300.1	9.6e-12	41.35	Ribosomal protein S21 family protein	[more]
AT5G63300.2	2.6e-09	55.00	Ribosomal protein S21 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001911	Ribosomal protein S21	PRINTS	PR00976	RIBOSOMALS21	coord: 73..81 score: 47.22 coord: 81..90 score: 27.5 coord: 93..103 score: 44.7 coord: 105..115 score: 42.42
IPR001911	Ribosomal protein S21	TIGRFAM	TIGR00030	TIGR00030	coord: 71..127 e-value: 6.8E-14 score: 49.4
IPR001911	Ribosomal protein S21	PFAM	PF01165	Ribosomal_S21	coord: 72..125 e-value: 1.2E-15 score: 56.9
IPR001911	Ribosomal protein S21	PANTHER	PTHR21109	MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S21	coord: 1..160
IPR001911	Ribosomal protein S21	HAMAP	MF_00358	Ribosomal_S21	coord: 69..125 score: 13.992138
IPR038380	Ribosomal protein S21 superfamily	GENE3D	1.20.5.1150	Ribosomal protein S8	coord: 85..122 e-value: 1.2E-11 score: 45.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 108..168
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 108..132
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 133..155

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0003292.2	IVF0003292.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome