IVF0002994 (gene) Melon (IVF77) v1

Overview


Name	IVF0002994
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr04: 29460617 .. 29460943 (+)
RNA-Seq Expression	IVF0002994
Synteny	IVF0002994

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCTACACGATTTGAAGTGTCCAAGTTTAATGGACATGGAGATTTTGCTCTTTGGAGAAAAAAGATTAGAGCTATTTTGGTTCAACATAAAGTAGCAAAGATCTTAGATGAAGAGAGACTTCCAGATAATATTACAGAAAGTGAAAAAAGAGATATGGATGAAATGGCCTATTCGACTATTCTTCTGTATCTGTCAGATGAAGTTCTTAGGCTAGTGGATGAGGCTACTACTACAGGAGAGTTGTGGAAAAAGCTAGAGAGCCTTTATTTGACAAAGTCATTGCCAAATAAAATATATATAGGAGAAGTTCTTTGGATATAA

mRNA sequence

ATGGCTTCTACACGATTTGAAGTGTCCAAGTTTAATGGACATGGAGATTTTGCTCTTTGGAGAAAAAAGATTAGAGCTATTTTGGTTCAACATAAAGTAGCAAAGATCTTAGATGAAGAGAGACTTCCAGATAATATTACAGAAAGTGAAAAAAGAGATATGGATGAAATGGCCTATTCGACTATTCTTCTGTATCTGTCAGATGAAGTTCTTAGGCTAGTGGATGAGGCTACTACTACAGGAGAGTTGTGGAAAAAGCTAGAGAGCCTTTATTTGACAAAGTCATTGCCAAATAAAATATATATAGGAGAAGTTCTTTGGATATAA

Coding sequence (CDS)

ATGGCTTCTACACGATTTGAAGTGTCCAAGTTTAATGGACATGGAGATTTTGCTCTTTGGAGAAAAAAGATTAGAGCTATTTTGGTTCAACATAAAGTAGCAAAGATCTTAGATGAAGAGAGACTTCCAGATAATATTACAGAAAGTGAAAAAAGAGATATGGATGAAATGGCCTATTCGACTATTCTTCTGTATCTGTCAGATGAAGTTCTTAGGCTAGTGGATGAGGCTACTACTACAGGAGAGTTGTGGAAAAAGCTAGAGAGCCTTTATTTGACAAAGTCATTGCCAAATAAAATATATATAGGAGAAGTTCTTTGGATATAA

Protein sequence

MASTRFEVSKFNGHGDFALWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKIYIGEVLWI

Homology

[Close]

BLAST of IVF0002994 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.3e-17
Identity = 44/109 (40.37%), Postives = 76/109 (69.72%), Query Frame = 0


Query: 1   MASTRFEVSKFNGHGDFALWRKKIRAILVQHKVAKILD-EERLPDNITESEKRDMDEMAY 60
           M+  ++EV+KFNG   F+ W++++R +L+Q  + K+LD + + PD +   +  D+DE A 
Sbjct: 1   MSGVKYEVAKFNGDNGFSTWQRRMRDLLIQQGLHKVLDVDSKKPDTMKAEDWADLDERAA 60

Query: 61  STILLYLSDEVL-RLVDEATTTGELWKKLESLYLTKSLPNKIYIGEVLW 108
           S I L+LSD+V+  ++DE T  G +W +LESLY++K+L NK+Y+ + L+
Sbjct: 61  SAIRLHLSDDVVNNIIDEDTARG-IWTRLESLYMSKTLTNKLYLKKQLY 108

[Close]

BLAST of IVF0002994 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 52.0 bits (123), Expect = 4.9e-06
Identity = 30/100 (30.00%), Postives = 57/100 (57.00%), Query Frame = 0


Query: 1   MASTRFEVSKFNGHGDFALWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAYS 60
           M   +  +  F+G   +A+W+ +IRA+L +  V K++D   +P+ + +S K+  +  A S
Sbjct: 1   MDKAKRNIKPFDGE-KYAIWKFRIRALLAEQDVLKVVD-GLMPNEVDDSWKK-AERCAKS 60

Query: 61  TILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKI 101
           TI+ YLSD  L       T  ++ + L+++Y  KSL +++
Sbjct: 61  TIIEYLSDSFLNFATSDITARQILENLDAVYERKSLASQL 97

[Close]

BLAST of IVF0002994 vs. ExPASy TrEMBL
Match: A0A5D3CQJ5 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold17264G00020 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 1.7e-49
Identity = 103/104 (99.04%), Postives = 103/104 (99.04%), Query Frame = 0


Query: 1   MASTRFEVSKFNGHGDFALWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAYS 60
           MASTRFEVSKFNGHGDFALWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAYS
Sbjct: 1   MASTRFEVSKFNGHGDFALWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAYS 60

Query: 61  TILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKIYIGE 105
           TILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKIYI E
Sbjct: 61  TILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKIYIKE 104

[Close]

BLAST of IVF0002994 vs. ExPASy TrEMBL
Match: A0A5D3DNU1 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004440 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 1.7e-49
Identity = 103/104 (99.04%), Postives = 103/104 (99.04%), Query Frame = 0


Query: 1   MASTRFEVSKFNGHGDFALWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAYS 60
           MASTRFEVSKFNGHGDFALWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAYS
Sbjct: 1   MASTRFEVSKFNGHGDFALWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAYS 60

Query: 61  TILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKIYIGE 105
           TILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKIYI E
Sbjct: 61  TILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKIYIKE 104

[Close]

BLAST of IVF0002994 vs. ExPASy TrEMBL
Match: A0A5A7U2U7 (Retrotransposon protein, putative, Ty1-copia sub-class OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G00590 PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 1.1e-48
Identity = 102/104 (98.08%), Postives = 102/104 (98.08%), Query Frame = 0


Query: 1   MASTRFEVSKFNGHGDFALWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAYS 60
           MASTRFEVSKFNGHGDFALWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAY 
Sbjct: 1   MASTRFEVSKFNGHGDFALWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAYW 60

Query: 61  TILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKIYIGE 105
           TILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKIYI E
Sbjct: 61  TILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKIYIKE 104

[Close]

BLAST of IVF0002994 vs. ExPASy TrEMBL
Match: A0A5A7UB25 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold560G00190 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 5.4e-48
Identity = 101/104 (97.12%), Postives = 102/104 (98.08%), Query Frame = 0


Query: 1   MASTRFEVSKFNGHGDFALWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAYS 60
           MASTRFEVSKFNGHGDF+LWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAYS
Sbjct: 1   MASTRFEVSKFNGHGDFSLWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAYS 60

Query: 61  TILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKIYIGE 105
           TILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSL NKIYI E
Sbjct: 61  TILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLLNKIYIKE 104

[Close]

BLAST of IVF0002994 vs. ExPASy TrEMBL
Match: A0A5A7TUE4 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G001070 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 2.1e-47
Identity = 99/104 (95.19%), Postives = 102/104 (98.08%), Query Frame = 0


Query: 1   MASTRFEVSKFNGHGDFALWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAYS 60
           MASTRFEVSKFNG+GDFALWRKKIR ILVQHKVAKILDEERLP+NITESEKRDMDEMAYS
Sbjct: 1   MASTRFEVSKFNGNGDFALWRKKIRVILVQHKVAKILDEERLPENITESEKRDMDEMAYS 60

Query: 61  TILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKIYIGE 105
           TILLYLSDEVLRLVD+ATTTGELWKKLESLYLTKSLPNKIYI E
Sbjct: 61  TILLYLSDEVLRLVDDATTTGELWKKLESLYLTKSLPNKIYIKE 104

[Close]

BLAST of IVF0002994 vs. NCBI nr
Match: TYK11792.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK13825.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 204 bits (519), Expect = 2.50e-65
Identity = 103/104 (99.04%), Postives = 103/104 (99.04%), Query Frame = 0


Query: 1   MASTRFEVSKFNGHGDFALWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAYS 60
           MASTRFEVSKFNGHGDFALWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAYS
Sbjct: 1   MASTRFEVSKFNGHGDFALWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAYS 60

Query: 61  TILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKIYIGE 104
           TILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKIYI E
Sbjct: 61  TILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKIYIKE 104

[Close]

BLAST of IVF0002994 vs. NCBI nr
Match: TYK25306.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 204 bits (519), Expect = 2.41e-58
Identity = 103/104 (99.04%), Postives = 103/104 (99.04%), Query Frame = 0


Query: 1   MASTRFEVSKFNGHGDFALWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAYS 60
           MASTRFEVSKFNGHGDFALWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAYS
Sbjct: 1   MASTRFEVSKFNGHGDFALWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAYS 60

Query: 61  TILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKIYIGE 104
           TILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKIYI E
Sbjct: 61  TILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKIYIKE 104

[Close]

BLAST of IVF0002994 vs. NCBI nr
Match: TYK04234.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 188 bits (478), Expect = 2.86e-58
Identity = 94/104 (90.38%), Postives = 99/104 (95.19%), Query Frame = 0


Query: 1   MASTRFEVSKFNGHGDFALWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAYS 60
           MASTRFEVSKFNG+ DFALWRK IR ILVQHKVAKILDEERLP+NIT SEKRDMDEMAYS
Sbjct: 1   MASTRFEVSKFNGNDDFALWRKNIRVILVQHKVAKILDEERLPENITVSEKRDMDEMAYS 60

Query: 61  TILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKIYIGE 104
           TILLYLSDEVLRLVDEATTTGELWKKLE+LYLTKSLPNK+Y+ E
Sbjct: 61  TILLYLSDEVLRLVDEATTTGELWKKLENLYLTKSLPNKLYLKE 104

[Close]

BLAST of IVF0002994 vs. NCBI nr
Match: KAA0066028.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 191 bits (486), Expect = 7.44e-58
Identity = 98/104 (94.23%), Postives = 101/104 (97.12%), Query Frame = 0


Query: 1   MASTRFEVSKFNGHGDFALWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAYS 60
           MASTRFEVSKFNG+GDFA+WRKKIRAILVQHKVAKILDE RLP+NITESEKRDMDEMAYS
Sbjct: 1   MASTRFEVSKFNGNGDFAIWRKKIRAILVQHKVAKILDEGRLPENITESEKRDMDEMAYS 60

Query: 61  TILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKIYIGE 104
           TILLYLSDEVLRLVDEATTTGEL KKLESLYLTKSLPNKIYI E
Sbjct: 61  TILLYLSDEVLRLVDEATTTGELCKKLESLYLTKSLPNKIYIKE 104

[Close]

BLAST of IVF0002994 vs. NCBI nr
Match: TYK05815.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 191 bits (486), Expect = 1.67e-57
Identity = 98/104 (94.23%), Postives = 101/104 (97.12%), Query Frame = 0


Query: 1   MASTRFEVSKFNGHGDFALWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAYS 60
           MASTRFEVSKFNG+GDFA+WRKKIRAILVQHKVAKILDE RLP+NITESEKRDMDEMAYS
Sbjct: 1   MASTRFEVSKFNGNGDFAIWRKKIRAILVQHKVAKILDEGRLPENITESEKRDMDEMAYS 60

Query: 61  TILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKIYIGE 104
           TILLYLSDEVLRLVDEATTTGEL KKLESLYLTKSLPNKIYI E
Sbjct: 61  TILLYLSDEVLRLVDEATTTGELCKKLESLYLTKSLPNKIYIKE 104

The following BLAST results are available for this feature:

BLAST of IVF0002994 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	1.3e-17	40.37	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	4.9e-06	30.00	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]

BLAST of IVF0002994 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CQJ5	1.7e-49	99.04	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3DNU1	1.7e-49	99.04	Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A5A7U2U7	1.1e-48	98.08	Retrotransposon protein, putative, Ty1-copia sub-class OS=Cucumis melo var. maku...	[more]
A0A5A7UB25	5.4e-48	97.12	Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A5A7TUE4	2.1e-47	95.19	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]

BLAST of IVF0002994 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK11792.1	2.50e-65	99.04	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK25306.1	2.41e-58	99.04	putative gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
TYK04234.1	2.86e-58	90.38	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0066028.1	7.44e-58	94.23	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK05815.1	1.67e-57	94.23	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]

BLAST of IVF0002994 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 54..102 e-value: 9.7E-9 score: 35.1
None	No IPR available	PANTHER	PTHR34676:SF6	SUBFAMILY NOT NAMED	coord: 1..102
None	No IPR available	PANTHER	PTHR34676	FAMILY NOT NAMED	coord: 1..102

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0002994.1	IVF0002994.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0042393	histone binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding