IVF0002953 (gene) Melon (IVF77) v1

Overview
NameIVF0002953
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionNBS-LRR type resistance protein
Locationchr05: 18600771 .. 18601013 (+)
RNA-Seq ExpressionIVF0002953
SyntenyIVF0002953
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGCAAGAAGCAGCTGAAGACCGAGTGTTTCAGACGTCGGTGAACAAGAAAGCAACAGGTAAGGCTCGGTTAGAAAACAGGGGTCGACTTGCTCGGCTCAGCTCGGGGGAGGACGACCCAACACTTGGATCGACTTGGAGAAGAAAGCTGGCTCGCACGTGCTTGGAGGAAGACACGGCAGCTGGCAGTTCCATGGAAGACGATAGAGCTACGGCGAGCGGAGAAGATCGACGTTCGTGA

mRNA sequence

ATGAGGCAAGAAGCAGCTGAAGACCGAGTGTTTCAGACGTCGGTGAACAAGAAAGCAACAGGTAAGGCTCGGTTAGAAAACAGGGGTCGACTTGCTCGGCTCAGCTCGGGGGAGGACGACCCAACACTTGGATCGACTTGGAGAAGAAAGCTGGCTCGCACGTGCTTGGAGGAAGACACGGCAGCTGGCAGTTCCATGGAAGACGATAGAGCTACGGCGAGCGGAGAAGATCGACGTTCGTGA

Coding sequence (CDS)

ATGAGGCAAGAAGCAGCTGAAGACCGAGTGTTTCAGACGTCGGTGAACAAGAAAGCAACAGGTAAGGCTCGGTTAGAAAACAGGGGTCGACTTGCTCGGCTCAGCTCGGGGGAGGACGACCCAACACTTGGATCGACTTGGAGAAGAAAGCTGGCTCGCACGTGCTTGGAGGAAGACACGGCAGCTGGCAGTTCCATGGAAGACGATAGAGCTACGGCGAGCGGAGAAGATCGACGTTCGTGA

Protein sequence

MRQEAAEDRVFQTSVNKKATGKARLENRGRLARLSSGEDDPTLGSTWRRKLARTCLEEDTAAGSSMEDDRATASGEDRRS
Homology
BLAST of IVF0002953 vs. ExPASy TrEMBL
Match: A0A5A7U7U5 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold609G00630 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.6e-04
Identity = 28/42 (66.67%), Postives = 31/42 (73.81%), Query Frame = 0

Query: 39  DDPTLGSTWRRKLARTCLEEDTAAGSSMEDDRATASGEDRRS 81
           DDP LGS W R+LAR  LEED  AGSSMED  A  SG+D+RS
Sbjct: 75  DDPVLGSAWIRRLARAYLEEDVTAGSSMEDHGAATSGDDKRS 116

BLAST of IVF0002953 vs. NCBI nr
Match: KAA0051832.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa] >TYK21413.1 NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 55.8 bits (133), Expect = 4.39e-07
Identity = 28/42 (66.67%), Postives = 31/42 (73.81%), Query Frame = 0

Query: 39  DDPTLGSTWRRKLARTCLEEDTAAGSSMEDDRATASGEDRRS 80
           DDP LGS W R+LAR  LEED  AGSSMED  A  SG+D+RS
Sbjct: 75  DDPVLGSAWIRRLARAYLEEDVTAGSSMEDHGAATSGDDKRS 116

BLAST of IVF0002953 vs. NCBI nr
Match: KAA0040517.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 51.6 bits (122), Expect = 3.13e-05
Identity = 27/43 (62.79%), Postives = 33/43 (76.74%), Query Frame = 0

Query: 38 EDDPTLGSTWRRKLARTCLEEDTAAGSSMEDDRATASGEDRRS 80
          +DD TLGS W R+LAR  LEED AA SS+EDD AT S +++RS
Sbjct: 20 KDDLTLGSAWSRRLARVRLEEDAAASSSVEDDGATTSEDNQRS 62

BLAST of IVF0002953 vs. NCBI nr
Match: TYK23446.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 51.6 bits (122), Expect = 3.13e-05
Identity = 27/43 (62.79%), Postives = 33/43 (76.74%), Query Frame = 0

Query: 38 EDDPTLGSTWRRKLARTCLEEDTAAGSSMEDDRATASGEDRRS 80
          +DD TLGS W R+LAR  LEED AA SS+EDD AT S +++RS
Sbjct: 20 KDDLTLGSAWSRRLARVRLEEDAAASSSVEDDGATTSEDNQRS 62

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7U7U51.6e-0466.67NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
Match NameE-valueIdentityDescription
KAA0051832.14.39e-0766.67NBS-LRR type resistance protein [Cucumis melo var. makuwa] >TYK21413.1 NBS-LRR t... [more]
KAA0040517.13.13e-0562.79Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
TYK23446.13.13e-0562.79Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 21..35
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 57..80
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 21..45

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0002953.1IVF0002953.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding