IVF0002859 (gene) Melon (IVF77) v1

Overview


Name	IVF0002859
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Paired amphipathic helix protein Sin3-like 2-like
Location	chr09: 20716897 .. 20719103 (+)
RNA-Seq Expression	IVF0002859
Synteny	IVF0002859

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTCAATGGCGAGCGGAAAATCCCAAAAGGCAACCTTGGCGGACGCCATATCATATGTTTTGAGAGTGAAGGAAAGATTTGAAAGAAACAGAGAAAAGTATGAACGTTTCCTTGAAACTGTCAAAGATTACGGGGACCGAAAAATTGATTTTGTGGAACTCTATGCAACACTAGCGAACTTGTTTCAAGACCACCCAGATCTTATTTGGGGCTTACTTAGGTTCTTGCCCAGCAAGTAATCACTCACCGTGAGATCATTCTTGAACTTGGACCCCAATGTTGTAATTTTAGGGACGAAGGGAAAATTATTATTGTAATATTTTAATCTCTCAACAACCAATATTGTGCGATCTTCTATCTTCTTTCTGCAAAATTCCTTTTTCGCTCTGCAACGACTTATGGCGTTTTCCACACTGCCCATCTTCTTCTTCTTCGTTTTCGTCTTCATAATTATCCCAATTTCTTATTCCTTACCCTTCACTGTACTCCACGGTATGTTTCTTTTTCTTCTCTTTTTTTTTTTTTTTTTTTTTTTGAATTTTAAGTGTAGGTTTTTGTATCTTTTGAATTCTTTGCGTTTATTTTCAATTGGGCGTGTTTAGATTCTACTGTTTGAACTTGTTGGATGAAGAAATCGATTGTTTGGTATGGATGATTGTTGTTTTGTCAGAATGGTATTCTCAAGGGATGCTTGGATGTTGAAGACTGTTTCTGGGAATCACTTTCTTGGTTTAAATTAGTTATTGGAAGGAATCTTTGAGACGCATTATCCACTTCTTGATTTGTTTTTCTTTATGGTTTACTCAGTTGATTTCATCGAGTTTGTTCGATTTGAGTTGCAATGTTGTTAGGCTTTTAGACTAGTTTTGAAATGGTCTATTGCCATACGTTATTCTTTATGTTATTTGAAGAAAAGAAAGGGCATAAAATTCATTTTAAATAGACTGCCAACATTTATTATTTGCAATAAGCAGCAAAGTTTTCCATGATATAAACTCATATTAATTAACATGTTCATATTAACTTGTCCTATGATTGCTCTAATGATTGGTTGAGCTCCTTGAGATCAAACCAAGCTCGTACTTGTTTCTTTAAATAAAAAAATCTGATTCATCTACAAAATCTTTGTGAGCAATTTATATAGCTTAATCCATCTACCTACCGAGAAATTGGCAATGGGGGATGGTATGCATGGTTTATGACCCTTGAGGAGCAAGCTAGTTAACGAGTAATAATATGATTCCATTATCTTGAGACTAAGACATGTTTCAAGTTGTGACGTTTCTGTTTTCTGTTCTGCAGTCTCGAATGTTTGCAACAAGGTGTTATAGATGTCCAGCTGGTTTTTGCCTCAATGGGATTCCGACATCTATGTTGATCATCTAGTTCATTATTATGACTACAGGTGAAGAAAACGAAGGTTTTAACTTCAATTTTGTTGGTCTCTCCCAGGTGATTCGTGAGGACTTGAGGACTTTAGTTTAACACAAGACTTTGTTTCGGTATAATTTTTTTCTCATTTTTAACTCATGCACAATCTAACAGTTTATTGTTTTCCTTTTGGGTTCTTCTGTATTCTTTATCTTGCCATCTCACAAAATTACATCATGGATAGACGAAGTTACTTGTCTTTCACTTTCTAACAGTTTGACGATGCCGTTCTGGTCCAAAGGAAACGTCCTGGTCCGAATATTACCTGGATGAATAGTTTGAACCTGTTTACCCCCACAACAGGTACTTGTTGACCAATTTAACATCCTTGAGATTTGCACAAGCATTTTTTGGTGCCATAACTTTGCATATCTTGCCCACAAAAAGAGAAACATGCACATACATGCACACATTAGGCACGGTAACATTGTATTATGTTGGCGAACACATTCGACATAACATCTCTGGATCTCGGTTTCATTACAAAATCCTAATACCACTGATGAGGCTGTTATTCAGCTGAAGGAATTATGAATGGCTTGTTCCCGAAGTCCATTCGAGTTCCTTGAAAAACCTCAAGACTTTCTCTGGCTCTAACAAACTTTCCTTTCAGCTTTTCTTTCCTGTGGAACAAGATTGTATGAGTACAGATTAACTTCAATTGTCGGTGTCTCGACTTATTTTCGCGCAGAACGAGGCTTACCATTGAGGATTGGATTGGATTGAGAAGCTTAGATGAAGATGGAAGAGTGAAATTTATAGAAGTTGCAGGAGG

mRNA sequence

CTTTCAATGGCGAGCGGAAAATCCCAAAAGGCAACCTTGGCGGACGCCATATCATATGTTTTGAGAGTGAAGGAAAGATTTGAAAGAAACAGAGAAAAGTATGAACGTTTCCTTGAAACTGTCAAAGATTACGGGGACCGAAAAATTGATTTTGTGGAACTCTATGCAACACTAGCGAACTTGTTTCAAGACCACCCAGATCTTATTTGGGGCTTACTTAGGTTCTTGCCCAGCAAGTAATCACTCACCGTGAGATCATTCTTGAACTTGGACCCCAATGTTGTAATTTTAGGGACGAAGGGAAAATTATTATTGTAATATTTTAATCTCTCAACAACCAATATTGTGCGATCTTCTATCTTCTTTCTGCAAAATTCCTTTTTCGCTCTGCAACGACTTATGGCGTTTTCCACACTGCCCATCTTCTTCTTCTTCGTTTTCGTCTTCATAATTATCCCAATTTCTTATTCCTTACCCTTCACTGTACTCCACGTCTCGAATGTTTGCAACAAGGTGTTATAGATGTCCAGCTGGTTTTTGCCTCAATGGGATTCCGACATCTATGTTGATCATCTAGTTCATTATTATGACTACAGGTGAAGAAAACGAAGGTTTTAACTTCAATTTTGTTGGTCTCTCCCAGGTGATTCGTGAGGACTTGAGGACTTTAGTTTAACACAAGACTTTGTTTCGTTTGACGATGCCGTTCTGGTCCAAAGGAAACGTCCTGGTCCGAATATTACCTGGATGAATAGTTTGAACCTGTTTACCCCCACAACAGAACGAGGCTTACCATTGAGGATTGGATTGGATTGAGAAGCTTAGATGAAGATGGAAGAGTGAAATTTATAGAAGTTGCAGGAGG

Coding sequence (CDS)

ATGGCGAGCGGAAAATCCCAAAAGGCAACCTTGGCGGACGCCATATCATATGTTTTGAGAGTGAAGGAAAGATTTGAAAGAAACAGAGAAAAGTATGAACGTTTCCTTGAAACTGTCAAAGATTACGGGGACCGAAAAATTGATTTTGTGGAACTCTATGCAACACTAGCGAACTTGTTTCAAGACCACCCAGATCTTATTTGGGGCTTACTTAGGTTCTTGCCCAGCAAGTAA

Protein sequence

MASGKSQKATLADAISYVLRVKERFERNREKYERFLETVKDYGDRKIDFVELYATLANLFQDHPDLIWGLLRFLPSK

Homology

[Close]

BLAST of IVF0002859 vs. ExPASy Swiss-Prot
Match: Q9SRH9 (Paired amphipathic helix protein Sin3-like 1 OS=Arabidopsis thaliana OX=3702 GN=SNL1 PE=1 SV=2)

HSP 1 Score: 65.5 bits (158), Expect = 3.1e-10
Identity = 33/70 (47.14%), Postives = 46/70 (65.71%), Query Frame = 0


Query: 6   SQKATLADAISYVLRVKERFERNREKYERFLETVKDYGDRKIDFVELYATLANLFQDHPD 65
           SQK T  DA+SY+  VKE F+  REKY+RFLE +KD+  ++ D   + A +  LF+ H +
Sbjct: 50  SQKLTTNDALSYLREVKEMFQDQREKYDRFLEVMKDFKAQRTDTGGVIARVKELFKGHNN 109

Query: 66  LIWGLLRFLP 76
           LI+G   FLP
Sbjct: 110 LIYGFNTFLP 119

[Close]

BLAST of IVF0002859 vs. ExPASy Swiss-Prot
Match: Q9LFQ3 (Paired amphipathic helix protein Sin3-like 2 OS=Arabidopsis thaliana OX=3702 GN=SNL2 PE=1 SV=2)

HSP 1 Score: 59.7 bits (143), Expect = 1.7e-08
Identity = 29/70 (41.43%), Postives = 45/70 (64.29%), Query Frame = 0


Query: 6   SQKATLADAISYVLRVKERFERNREKYERFLETVKDYGDRKIDFVELYATLANLFQDHPD 65
           +QK T  DA++Y+  VKE F+  R+KY+ FLE +KD+  +K D   + + +  LF+ H +
Sbjct: 45  TQKLTTDDALTYLKEVKEMFQDQRDKYDMFLEVMKDFKAQKTDTSGVISRVKELFKGHNN 104

Query: 66  LIWGLLRFLP 76
           LI+G   FLP
Sbjct: 105 LIFGFNTFLP 114

[Close]

BLAST of IVF0002859 vs. ExPASy Swiss-Prot
Match: O48686 (Paired amphipathic helix protein Sin3-like 3 OS=Arabidopsis thaliana OX=3702 GN=SNL3 PE=1 SV=3)

HSP 1 Score: 59.7 bits (143), Expect = 1.7e-08
Identity = 27/75 (36.00%), Postives = 46/75 (61.33%), Query Frame = 0


Query: 1  MASGKSQKATLADAISYVLRVKERFERNREKYERFLETVKDYGDRKIDFVELYATLANLF 60
          +  G +QK T  DA++Y+  VK++F+  R KY+ FLE +K++  +++D   +   +  LF
Sbjct: 2  VGGGSAQKLTTNDALAYLKAVKDKFQDQRGKYDEFLEVMKNFKSQRVDTAGVITRVKELF 61

Query: 61 QDHPDLIWGLLRFLP 76
          + H +LI G   FLP
Sbjct: 62 KGHQELILGFNTFLP 76

[Close]

BLAST of IVF0002859 vs. ExPASy Swiss-Prot
Match: O04539 (Paired amphipathic helix protein Sin3-like 4 OS=Arabidopsis thaliana OX=3702 GN=SNL4 PE=3 SV=3)

HSP 1 Score: 57.0 bits (136), Expect = 1.1e-07
Identity = 29/76 (38.16%), Postives = 47/76 (61.84%), Query Frame = 0


Query: 1  MASGKS-QKATLADAISYVLRVKERFERNREKYERFLETVKDYGDRKIDFVELYATLANL 60
          M  G S QK T  DA++Y+  VK++F+  R+KY+ FLE +KD+  +++D   +   +  L
Sbjct: 1  MVGGSSAQKLTTNDALAYLKAVKDKFQDKRDKYDEFLEVMKDFKAQRVDTTGVILRVKEL 60

Query: 61 FQDHPDLIWGLLRFLP 76
          F+ + +LI G   FLP
Sbjct: 61 FKGNRELILGFNTFLP 76

[Close]

BLAST of IVF0002859 vs. ExPASy Swiss-Prot
Match: Q9XIE1 (Paired amphipathic helix protein Sin3-like 5 OS=Arabidopsis thaliana OX=3702 GN=SNL5 PE=3 SV=3)

HSP 1 Score: 55.8 bits (133), Expect = 2.4e-07
Identity = 27/72 (37.50%), Postives = 45/72 (62.50%), Query Frame = 0


Query: 4   GKSQKATLADAISYVLRVKERFERNREKYERFLETVKDYGDRKIDFVELYATLANLFQDH 63
           G +   T  DA++Y+  VK+ F+ N+EKYE FL  +KD+  +++D   + A + +LF+ +
Sbjct: 36  GTTGGLTTVDALTYLKAVKDMFQDNKEKYETFLGVMKDFKAQRVDTNGVIARVKDLFKGY 95

Query: 64  PDLIWGLLRFLP 76
            DL+ G   FLP
Sbjct: 96  DDLLLGFNTFLP 107

[Close]

BLAST of IVF0002859 vs. ExPASy TrEMBL
Match: A0A067LM75 (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_15455 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 9.3e-10
Identity = 36/75 (48.00%), Postives = 51/75 (68.00%), Query Frame = 0


Query: 4  GKS-QKATLADAISYVLRVKERFERNREKYERFLETVKDYGDRKIDFVELYATLANLFQD 63
          GKS QK T+ D+++YV+ VKE F+  REKY+ FLE +KD+   +I+ + + A + NLF+ 
Sbjct: 13 GKSGQKLTILDSLTYVITVKETFQDKREKYDEFLEIMKDFRTDRINIIGVIARVKNLFKG 72

Query: 64 HPDLIWGLLRFLPSK 78
          H DLI G   FLP K
Sbjct: 73 HDDLILGFNTFLPEK 87

[Close]

BLAST of IVF0002859 vs. ExPASy TrEMBL
Match: A0A067LBN9 (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_15456 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.2e-09
Identity = 36/75 (48.00%), Postives = 50/75 (66.67%), Query Frame = 0


Query: 4  GKS-QKATLADAISYVLRVKERFERNREKYERFLETVKDYGDRKIDFVELYATLANLFQD 63
          GKS QK T+ D+++YV+ VKE F+  REKY+ FLE +KD+   +ID + + A +  LF+ 
Sbjct: 13 GKSGQKLTILDSLTYVITVKETFQDKREKYDEFLEIMKDFRTDRIDIIGVIARVKKLFKG 72

Query: 64 HPDLIWGLLRFLPSK 78
          H DLI G   FLP K
Sbjct: 73 HDDLILGFNTFLPEK 87

[Close]

BLAST of IVF0002859 vs. ExPASy TrEMBL
Match: A0A6I9UIE8 (paired amphipathic helix protein Sin3-like 2 isoform X1 OS=Sesamum indicum OX=4182 GN=LOC105177188 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.1e-09
Identity = 33/75 (44.00%), Postives = 52/75 (69.33%), Query Frame = 0


Query: 1   MASGKSQKATLADAISYVLRVKERFERNREKYERFLETVKDYGDRKIDFVELYATLANLF 60
           +A+G +QK T  DA+SY+ +VK+ F+  REKY+RFL+ +KD+  +++D   + A +  LF
Sbjct: 70  VAAGSTQKLTTNDALSYLKQVKDMFQDQREKYDRFLDVMKDFKAQRVDTAGVIARVKELF 129

Query: 61  QDHPDLIWGLLRFLP 76
           + HP+LI G   FLP
Sbjct: 130 KGHPNLILGFNTFLP 144

[Close]

BLAST of IVF0002859 vs. ExPASy TrEMBL
Match: A0A6I9UUD7 (paired amphipathic helix protein Sin3-like 2 isoform X2 OS=Sesamum indicum OX=4182 GN=LOC105177188 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.1e-09
Identity = 33/75 (44.00%), Postives = 52/75 (69.33%), Query Frame = 0


Query: 1   MASGKSQKATLADAISYVLRVKERFERNREKYERFLETVKDYGDRKIDFVELYATLANLF 60
           +A+G +QK T  DA+SY+ +VK+ F+  REKY+RFL+ +KD+  +++D   + A +  LF
Sbjct: 70  VAAGSTQKLTTNDALSYLKQVKDMFQDQREKYDRFLDVMKDFKAQRVDTAGVIARVKELF 129

Query: 61  QDHPDLIWGLLRFLP 76
           + HP+LI G   FLP
Sbjct: 130 KGHPNLILGFNTFLP 144

[Close]

BLAST of IVF0002859 vs. ExPASy TrEMBL
Match: A0A2Z7BF10 (Paired amphipathic helix protein Sin3-like 2-like OS=Dorcoceras hygrometricum OX=472368 GN=F511_01443 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.1e-09
Identity = 34/75 (45.33%), Postives = 51/75 (68.00%), Query Frame = 0


Query: 1   MASGKSQKATLADAISYVLRVKERFERNREKYERFLETVKDYGDRKIDFVELYATLANLF 60
           +ASG +QK T  DA++Y+  VK+ F+  REKY+RFL+ +KD+  ++ID   + A +  LF
Sbjct: 288 VASGSTQKLTTNDALTYLKEVKDMFQDQREKYDRFLDVMKDFKAQRIDTAGVIARVKELF 347

Query: 61  QDHPDLIWGLLRFLP 76
           + HP+LI G   FLP
Sbjct: 348 KGHPNLILGFNTFLP 362

[Close]

BLAST of IVF0002859 vs. NCBI nr
Match: KDP45895.1 (hypothetical protein JCGZ_15455 [Jatropha curcas])

HSP 1 Score: 72.8 bits (177), Expect = 2.23e-14
Identity = 36/75 (48.00%), Postives = 51/75 (68.00%), Query Frame = 0


Query: 4  GKS-QKATLADAISYVLRVKERFERNREKYERFLETVKDYGDRKIDFVELYATLANLFQD 63
          GKS QK T+ D+++YV+ VKE F+  REKY+ FLE +KD+   +I+ + + A + NLF+ 
Sbjct: 13 GKSGQKLTILDSLTYVITVKETFQDKREKYDEFLEIMKDFRTDRINIIGVIARVKNLFKG 72

Query: 64 HPDLIWGLLRFLPSK 77
          H DLI G   FLP K
Sbjct: 73 HDDLILGFNTFLPEK 87

[Close]

BLAST of IVF0002859 vs. NCBI nr
Match: KDP45896.1 (hypothetical protein JCGZ_15456 [Jatropha curcas])

HSP 1 Score: 72.4 bits (176), Expect = 3.16e-14
Identity = 36/75 (48.00%), Postives = 50/75 (66.67%), Query Frame = 0


Query: 4  GKS-QKATLADAISYVLRVKERFERNREKYERFLETVKDYGDRKIDFVELYATLANLFQD 63
          GKS QK T+ D+++YV+ VKE F+  REKY+ FLE +KD+   +ID + + A +  LF+ 
Sbjct: 13 GKSGQKLTILDSLTYVITVKETFQDKREKYDEFLEIMKDFRTDRIDIIGVIARVKKLFKG 72

Query: 64 HPDLIWGLLRFLPSK 77
          H DLI G   FLP K
Sbjct: 73 HDDLILGFNTFLPEK 87

[Close]

BLAST of IVF0002859 vs. NCBI nr
Match: XP_011098545.1 (paired amphipathic helix protein Sin3-like 2 isoform X2 [Sesamum indicum])

HSP 1 Score: 72.0 bits (175), Expect = 1.79e-12
Identity = 33/76 (43.42%), Postives = 52/76 (68.42%), Query Frame = 0


Query: 1   MASGKSQKATLADAISYVLRVKERFERNREKYERFLETVKDYGDRKIDFVELYATLANLF 60
           +A+G +QK T  DA+SY+ +VK+ F+  REKY+RFL+ +KD+  +++D   + A +  LF
Sbjct: 70  VAAGSTQKLTTNDALSYLKQVKDMFQDQREKYDRFLDVMKDFKAQRVDTAGVIARVKELF 129

Query: 61  QDHPDLIWGLLRFLPS 76
           + HP+LI G   FLP 
Sbjct: 130 KGHPNLILGFNTFLPK 145

[Close]

BLAST of IVF0002859 vs. NCBI nr
Match: XP_011098544.1 (paired amphipathic helix protein Sin3-like 2 isoform X1 [Sesamum indicum])

HSP 1 Score: 72.0 bits (175), Expect = 1.79e-12
Identity = 33/76 (43.42%), Postives = 52/76 (68.42%), Query Frame = 0


Query: 1   MASGKSQKATLADAISYVLRVKERFERNREKYERFLETVKDYGDRKIDFVELYATLANLF 60
           +A+G +QK T  DA+SY+ +VK+ F+  REKY+RFL+ +KD+  +++D   + A +  LF
Sbjct: 70  VAAGSTQKLTTNDALSYLKQVKDMFQDQREKYDRFLDVMKDFKAQRVDTAGVIARVKELF 129

Query: 61  QDHPDLIWGLLRFLPS 76
           + HP+LI G   FLP 
Sbjct: 130 KGHPNLILGFNTFLPK 145

[Close]

BLAST of IVF0002859 vs. NCBI nr
Match: KZV32932.1 (paired amphipathic helix protein Sin3-like 2-like [Dorcoceras hygrometricum])

HSP 1 Score: 72.0 bits (175), Expect = 1.79e-12
Identity = 34/76 (44.74%), Postives = 51/76 (67.11%), Query Frame = 0


Query: 1   MASGKSQKATLADAISYVLRVKERFERNREKYERFLETVKDYGDRKIDFVELYATLANLF 60
           +ASG +QK T  DA++Y+  VK+ F+  REKY+RFL+ +KD+  ++ID   + A +  LF
Sbjct: 288 VASGSTQKLTTNDALTYLKEVKDMFQDQREKYDRFLDVMKDFKAQRIDTAGVIARVKELF 347

Query: 61  QDHPDLIWGLLRFLPS 76
           + HP+LI G   FLP 
Sbjct: 348 KGHPNLILGFNTFLPK 363

[Close]

BLAST of IVF0002859 vs. TAIR 10
Match: AT3G01320.1 (SIN3-like 1 )

HSP 1 Score: 65.5 bits (158), Expect = 2.2e-11
Identity = 33/70 (47.14%), Postives = 46/70 (65.71%), Query Frame = 0


Query: 6   SQKATLADAISYVLRVKERFERNREKYERFLETVKDYGDRKIDFVELYATLANLFQDHPD 65
           SQK T  DA+SY+  VKE F+  REKY+RFLE +KD+  ++ D   + A +  LF+ H +
Sbjct: 50  SQKLTTNDALSYLREVKEMFQDQREKYDRFLEVMKDFKAQRTDTGGVIARVKELFKGHNN 109

Query: 66  LIWGLLRFLP 76
           LI+G   FLP
Sbjct: 110 LIYGFNTFLP 119

[Close]

BLAST of IVF0002859 vs. TAIR 10
Match: AT3G01320.2 (SIN3-like 1 )

HSP 1 Score: 65.5 bits (158), Expect = 2.2e-11
Identity = 33/70 (47.14%), Postives = 46/70 (65.71%), Query Frame = 0


Query: 6   SQKATLADAISYVLRVKERFERNREKYERFLETVKDYGDRKIDFVELYATLANLFQDHPD 65
           SQK T  DA+SY+  VKE F+  REKY+RFLE +KD+  ++ D   + A +  LF+ H +
Sbjct: 50  SQKLTTNDALSYLREVKEMFQDQREKYDRFLEVMKDFKAQRTDTGGVIARVKELFKGHNN 109

Query: 66  LIWGLLRFLP 76
           LI+G   FLP
Sbjct: 110 LIYGFNTFLP 119

[Close]

BLAST of IVF0002859 vs. TAIR 10
Match: AT1G24190.1 (SIN3-like 3 )

HSP 1 Score: 59.7 bits (143), Expect = 1.2e-09
Identity = 27/75 (36.00%), Postives = 46/75 (61.33%), Query Frame = 0


Query: 1  MASGKSQKATLADAISYVLRVKERFERNREKYERFLETVKDYGDRKIDFVELYATLANLF 60
          +  G +QK T  DA++Y+  VK++F+  R KY+ FLE +K++  +++D   +   +  LF
Sbjct: 2  VGGGSAQKLTTNDALAYLKAVKDKFQDQRGKYDEFLEVMKNFKSQRVDTAGVITRVKELF 61

Query: 61 QDHPDLIWGLLRFLP 76
          + H +LI G   FLP
Sbjct: 62 KGHQELILGFNTFLP 76

[Close]

BLAST of IVF0002859 vs. TAIR 10
Match: AT1G24190.2 (SIN3-like 3 )

HSP 1 Score: 59.7 bits (143), Expect = 1.2e-09
Identity = 27/75 (36.00%), Postives = 46/75 (61.33%), Query Frame = 0


Query: 1  MASGKSQKATLADAISYVLRVKERFERNREKYERFLETVKDYGDRKIDFVELYATLANLF 60
          +  G +QK T  DA++Y+  VK++F+  R KY+ FLE +K++  +++D   +   +  LF
Sbjct: 2  VGGGSAQKLTTNDALAYLKAVKDKFQDQRGKYDEFLEVMKNFKSQRVDTAGVITRVKELF 61

Query: 61 QDHPDLIWGLLRFLP 76
          + H +LI G   FLP
Sbjct: 62 KGHQELILGFNTFLP 76

[Close]

BLAST of IVF0002859 vs. TAIR 10
Match: AT5G15020.1 (SIN3-like 2 )

HSP 1 Score: 59.7 bits (143), Expect = 1.2e-09
Identity = 29/70 (41.43%), Postives = 45/70 (64.29%), Query Frame = 0


Query: 6   SQKATLADAISYVLRVKERFERNREKYERFLETVKDYGDRKIDFVELYATLANLFQDHPD 65
           +QK T  DA++Y+  VKE F+  R+KY+ FLE +KD+  +K D   + + +  LF+ H +
Sbjct: 45  TQKLTTDDALTYLKEVKEMFQDQRDKYDMFLEVMKDFKAQKTDTSGVISRVKELFKGHNN 104

Query: 66  LIWGLLRFLP 76
           LI+G   FLP
Sbjct: 105 LIFGFNTFLP 114

The following BLAST results are available for this feature:

BLAST of IVF0002859 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SRH9	3.1e-10	47.14	Paired amphipathic helix protein Sin3-like 1 OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q9LFQ3	1.7e-08	41.43	Paired amphipathic helix protein Sin3-like 2 OS=Arabidopsis thaliana OX=3702 GN=...	[more]
O48686	1.7e-08	36.00	Paired amphipathic helix protein Sin3-like 3 OS=Arabidopsis thaliana OX=3702 GN=...	[more]
O04539	1.1e-07	38.16	Paired amphipathic helix protein Sin3-like 4 OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q9XIE1	2.4e-07	37.50	Paired amphipathic helix protein Sin3-like 5 OS=Arabidopsis thaliana OX=3702 GN=...	[more]

BLAST of IVF0002859 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A067LM75	9.3e-10	48.00	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_15455 PE=4 SV=1	[more]
A0A067LBN9	1.2e-09	48.00	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_15456 PE=4 SV=1	[more]
A0A6I9UIE8	2.1e-09	44.00	paired amphipathic helix protein Sin3-like 2 isoform X1 OS=Sesamum indicum OX=41...	[more]
A0A6I9UUD7	2.1e-09	44.00	paired amphipathic helix protein Sin3-like 2 isoform X2 OS=Sesamum indicum OX=41...	[more]
A0A2Z7BF10	2.1e-09	45.33	Paired amphipathic helix protein Sin3-like 2-like OS=Dorcoceras hygrometricum OX...	[more]

BLAST of IVF0002859 vs. NCBI nr


Match Name	E-value	Identity	Description
KDP45895.1	2.23e-14	48.00	hypothetical protein JCGZ_15455 [Jatropha curcas]	[more]
KDP45896.1	3.16e-14	48.00	hypothetical protein JCGZ_15456 [Jatropha curcas]	[more]
XP_011098545.1	1.79e-12	43.42	paired amphipathic helix protein Sin3-like 2 isoform X2 [Sesamum indicum]	[more]
XP_011098544.1	1.79e-12	43.42	paired amphipathic helix protein Sin3-like 2 isoform X1 [Sesamum indicum]	[more]
KZV32932.1	1.79e-12	44.74	paired amphipathic helix protein Sin3-like 2-like [Dorcoceras hygrometricum]	[more]

BLAST of IVF0002859 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G01320.1	2.2e-11	47.14	SIN3-like 1	[more]
AT3G01320.2	2.2e-11	47.14	SIN3-like 1	[more]
AT1G24190.1	1.2e-09	36.00	SIN3-like 3	[more]
AT1G24190.2	1.2e-09	36.00	SIN3-like 3	[more]
AT5G15020.1	1.2e-09	41.43	SIN3-like 2	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003822	Paired amphipathic helix	PFAM	PF02671	PAH	coord: 30..74 e-value: 1.1E-10 score: 41.3
IPR003822	Paired amphipathic helix	PROSITE	PS51477	PAH	coord: 7..77 score: 15.438602
IPR036600	Paired amphipathic helix superfamily	GENE3D	1.20.1160.11	Paired amphipathic helix	coord: 13..75 e-value: 1.4E-18 score: 69.0
IPR036600	Paired amphipathic helix superfamily	SUPERFAMILY	47762	PAH2 domain	coord: 6..75
IPR039774	Transcriptional regulatory protein Sin3-like	PANTHER	PTHR12346	SIN3B-RELATED	coord: 4..76

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0002859.1	IVF0002859.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0043167	ion binding
molecular_function	GO:0016491	oxidoreductase activity
molecular_function	GO:0003714	transcription corepressor activity