IVF0002782 (gene) Melon (IVF77) v1

Overview
NameIVF0002782
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionUnknown protein
Locationchr05: 2254896 .. 2255360 (+)
RNA-Seq ExpressionIVF0002782
SyntenyIVF0002782
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAATTGGTGCATCCAAATGTTGTTCTTATACTCAGATTTTGGCACACATTTGTCCAAGCAACAAACAATCACAAGACATCTCGTATCGTCAAAAACAAGCACGTCCAGACTACGTTCACAACGAGGTGCAAGCCCATCTGAGTACGTCAACTCGACATCCCACCTCACTTTTCGCCCAATGGTCGGACGTGGCATTCCGACGAAACCCGTCCACCAAGCATAAAACAATTGCAAGACATCTCGTATCCTCACAGACAAGCACGTCCAGAGACTACGGCCACAACAAGGTGCAAGCATTATCCAAGCAAGCCCATCCGAGCATCAATTCAACATCCCGCTCTCACTCCCTGCCCGACGTACAAGCCCGTCATTCTGGTCAAACCTCTCCACCAAGCACGAAGCAATTGCAAGACAAGCACGCCCAAACTAAGTGCTTCTCCAATGATTTGTTGATATTTTAG

mRNA sequence

ATGACAATTGGTGCATCCAAATGTTGTTCTTATACTCAGATTTTGGCACACATTTGTCCAAGCAACAAACAATCACAAGACATCTCGTATCGTCAAAAACAAGCACGTCCAGACTACGTTCACAACGAGGTGCAAGCCCATCTGAGTACGTCAACTCGACATCCCACCTCACTTTTCGCCCAATGGTCGGACGTGGCATTCCGACGAAACCCGTCCACCAAGCATAAAACAATTGCAAGACATCTCGTATCCTCACAGACAAGCACGTCCAGAGACTACGGCCACAACAAGGTGCAAGCATTATCCAAGCAAGCCCATCCGAGCATCAATTCAACATCCCGCTCTCACTCCCTGCCCGACGTACAAGCCCGTCATTCTGGTCAAACCTCTCCACCAAGCACGAAGCAATTGCAAGACAAGCACGCCCAAACTAAGTGCTTCTCCAATGATTTGTTGATATTTTAG

Coding sequence (CDS)

ATGACAATTGGTGCATCCAAATGTTGTTCTTATACTCAGATTTTGGCACACATTTGTCCAAGCAACAAACAATCACAAGACATCTCGTATCGTCAAAAACAAGCACGTCCAGACTACGTTCACAACGAGGTGCAAGCCCATCTGAGTACGTCAACTCGACATCCCACCTCACTTTTCGCCCAATGGTCGGACGTGGCATTCCGACGAAACCCGTCCACCAAGCATAAAACAATTGCAAGACATCTCGTATCCTCACAGACAAGCACGTCCAGAGACTACGGCCACAACAAGGTGCAAGCATTATCCAAGCAAGCCCATCCGAGCATCAATTCAACATCCCGCTCTCACTCCCTGCCCGACGTACAAGCCCGTCATTCTGGTCAAACCTCTCCACCAAGCACGAAGCAATTGCAAGACAAGCACGCCCAAACTAAGTGCTTCTCCAATGATTTGTTGATATTTTAG

Protein sequence

MTIGASKCCSYTQILAHICPSNKQSQDISYRQKQARPDYVHNEVQAHLSTSTRHPTSLFAQWSDVAFRRNPSTKHKTIARHLVSSQTSTSRDYGHNKVQALSKQAHPSINSTSRSHSLPDVQARHSGQTSPPSTKQLQDKHAQTKCFSNDLLIF
Homology
BLAST of IVF0002782 vs. ExPASy TrEMBL
Match: A0A5D3BW21 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11G00500 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.2e-11
Identity = 71/183 (38.80%), Postives = 82/183 (44.81%), Query Frame = 0

Query: 27  DISYRQKQARPDYVHNEVQAHLSTSTRH--PTSLFAQWSDVAFRRNPSTKHKTIARHLVS 86
           D +   + ARP    + VQA L     H  P SL  Q S+VA RRNPST+HK IARHLVS
Sbjct: 107 DTNKPARSARPHRGASIVQAKLIRVREHDIPLSLPVQQSNVALRRNPSTEHKEIARHLVS 166

Query: 87  SQTSTSRDYGHNKVQALSKQAHPSINS--------------------------------- 146
           S+ S    Y + +VQALS QAHPSINS                                 
Sbjct: 167 SRISPLGVYAYIEVQALSLQAHPSINSTLALTPCPTNKPIVMAKPLHQARSNRKKSPLGV 226

BLAST of IVF0002782 vs. ExPASy TrEMBL
Match: A0A5A7UP03 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold497G00670 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 2.8e-05
Identity = 48/114 (42.11%), Postives = 54/114 (47.37%), Query Frame = 0

Query: 29  SYRQKQARPDYVHNEVQAHLSTSTRHPTSLFAQWSDVAFRRNPSTKHKTIARHLVSSQTS 88
           S R  QARP    N     L      PT  F Q      + NPST  + I RHL+S +TS
Sbjct: 132 SSRIIQARPSKYINSTSHSLPARCTGPT--FHQ-----LQPNPSTNQEAIPRHLLSPRTS 191

Query: 89  TSRDYGHNKVQALSKQAHPSINSTSRSHSLPDVQAR---HSGQTSPPSTKQLQD 140
           T R         +       I STSRSHS PDV  R   HS QT PP+ KQLQD
Sbjct: 192 TLRIRSQRDASIIQASPSKFIKSTSRSHSPPDVGVRYSIHSNQTLPPNKKQLQD 238

BLAST of IVF0002782 vs. ExPASy TrEMBL
Match: A0A5D3DBP5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold328G00310 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 2.8e-05
Identity = 48/114 (42.11%), Postives = 54/114 (47.37%), Query Frame = 0

Query: 29  SYRQKQARPDYVHNEVQAHLSTSTRHPTSLFAQWSDVAFRRNPSTKHKTIARHLVSSQTS 88
           S R  QARP    N     L      PT  F Q      + NPST  + I RHL+S +TS
Sbjct: 34  SSRIIQARPSKYINSTSHSLPARCTGPT--FHQ-----LQPNPSTNQEAIPRHLLSPRTS 93

Query: 89  TSRDYGHNKVQALSKQAHPSINSTSRSHSLPDVQAR---HSGQTSPPSTKQLQD 140
           T R         +       I STSRSHS PDV  R   HS QT PP+ KQLQD
Sbjct: 94  TLRIRSQRDASIIQASPSKFIKSTSRSHSPPDVGVRYSIHSNQTLPPNKKQLQD 140

BLAST of IVF0002782 vs. ExPASy TrEMBL
Match: A0A5A7SSW5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold239G001570 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 5.2e-04
Identity = 35/71 (49.30%), Postives = 39/71 (54.93%), Query Frame = 0

Query: 63  SDVAFRRNPSTKHKTIARHLVSSQTSTSRDYGHNKVQALSKQAHPSINSTSRSHSLPDVQ 122
           SDVA R NPSTKHK IA  LVS +TST R         +       INSTSRSHS PD +
Sbjct: 12  SDVALRSNPSTKHKVIASPLVSPRTSTPRLCQQQGTSIIRPSPSEYINSTSRSHSPPDDR 71

Query: 123 ARHSGQTSPPS 134
             HS   +  S
Sbjct: 72  TWHSNDVNTSS 82

BLAST of IVF0002782 vs. NCBI nr
Match: TYK03168.1 (hypothetical protein E5676_scaffold11G00500 [Cucumis melo var. makuwa])

HSP 1 Score: 80.5 bits (197), Expect = 2.71e-14
Identity = 70/177 (39.55%), Postives = 80/177 (45.20%), Query Frame = 0

Query: 33  KQARPDYVHNEVQAHLSTSTRH--PTSLFAQWSDVAFRRNPSTKHKTIARHLVSSQTSTS 92
           + ARP    + VQA L     H  P SL  Q S+VA RRNPST+HK IARHLVSS+ S  
Sbjct: 113 RSARPHRGASIVQAKLIRVREHDIPLSLPVQQSNVALRRNPSTEHKEIARHLVSSRISPL 172

Query: 93  RDYGHNKVQALSKQAHPSINST-------------------------------------- 146
             Y + +VQALS QAHPSINST                                      
Sbjct: 173 GVYAYIEVQALSLQAHPSINSTLALTPCPTNKPIVMAKPLHQARSNRKKSPLGVHAHAEV 232

BLAST of IVF0002782 vs. NCBI nr
Match: KAE8637138.1 (hypothetical protein CSA_015445 [Cucumis sativus] >KAE8637435.1 hypothetical protein CSA_004613 [Cucumis sativus] >KAE8637437.1 hypothetical protein CSA_004615 [Cucumis sativus])

HSP 1 Score: 74.7 bits (182), Expect = 1.11e-12
Identity = 55/117 (47.01%), Postives = 66/117 (56.41%), Query Frame = 0

Query: 21  SNKQSQDISYRQKQARPDYVHNEVQAHL-----STSTR------HPTSLFAQWSDVAFRR 80
           S KQSQ IS+ Q+QA P+  HN+VQA       STSTR      HPT  F +     FR 
Sbjct: 165 SKKQSQVISHPQEQASPNNAHNKVQASSKQARPSTSTRLPALTPHPT--FGE--KPTFRP 224

Query: 81  NPSTKHKTIARHLVSSQTSTSRDYGHNKVQALSKQAHPSINSTSRSHSLPDVQARHS 126
           NPSTK + I RHLVSS+TS  +         +       INSTSRSHS P+V A+HS
Sbjct: 225 NPSTKQEAIERHLVSSRTSEPKRRPQQSASIIQASPSKHINSTSRSHSPPEVGAQHS 277

BLAST of IVF0002782 vs. NCBI nr
Match: TYK21002.1 (hypothetical protein E5676_scaffold328G00310 [Cucumis melo var. makuwa])

HSP 1 Score: 59.7 bits (143), Expect = 2.15e-07
Identity = 50/111 (45.05%), Postives = 56/111 (50.45%), Query Frame = 0

Query: 34  QARPDYVHNEVQAHLSTSTRHPTSLFAQWSDVAFRRNPSTKHKTIARHLVSSQTSTSRDY 93
           QARP    N     L      PT  F Q      + NPST  + I RHL+S +TST R  
Sbjct: 39  QARPSKYINSTSHSLPARCTGPT--FHQ-----LQPNPSTNQEAIPRHLLSPRTSTLRIR 98

Query: 94  GHNKVQALSKQAHPS--INSTSRSHSLPDVQAR---HSGQTSPPSTKQLQD 139
                  +  QA PS  I STSRSHS PDV  R   HS QT PP+ KQLQD
Sbjct: 99  SQRDASII--QASPSKFIKSTSRSHSPPDVGVRYSIHSNQTLPPNKKQLQD 140

BLAST of IVF0002782 vs. NCBI nr
Match: KAE8649393.1 (hypothetical protein Csa_011819, partial [Cucumis sativus])

HSP 1 Score: 57.8 bits (138), Expect = 3.37e-07
Identity = 37/84 (44.05%), Postives = 45/84 (53.57%), Query Frame = 0

Query: 55  PTSLFAQWSDVAFRRNPSTKHKTIARHLVSSQTSTSRDYGHNKVQALSKQAHPSINSTSR 114
           P SL  +     FR NPS K + IA HLV S+TS  +         +       INSTSR
Sbjct: 35  PLSLPTRRRGATFRPNPSAKKEVIASHLVFSRTSKPKRRPQQSASIIQASPSKHINSTSR 94

Query: 115 SHSLPDVQARHSGQTSPPSTKQLQ 138
           S S PDV+AR+  QT P +TKQ Q
Sbjct: 95  SRSPPDVKARYFDQTLPTTTKQSQ 118

BLAST of IVF0002782 vs. NCBI nr
Match: KAA0057592.1 (hypothetical protein E6C27_scaffold497G00670 [Cucumis melo var. makuwa])

HSP 1 Score: 59.7 bits (143), Expect = 3.97e-07
Identity = 50/111 (45.05%), Postives = 56/111 (50.45%), Query Frame = 0

Query: 34  QARPDYVHNEVQAHLSTSTRHPTSLFAQWSDVAFRRNPSTKHKTIARHLVSSQTSTSRDY 93
           QARP    N     L      PT  F Q      + NPST  + I RHL+S +TST R  
Sbjct: 137 QARPSKYINSTSHSLPARCTGPT--FHQ-----LQPNPSTNQEAIPRHLLSPRTSTLRIR 196

Query: 94  GHNKVQALSKQAHPS--INSTSRSHSLPDVQAR---HSGQTSPPSTKQLQD 139
                  +  QA PS  I STSRSHS PDV  R   HS QT PP+ KQLQD
Sbjct: 197 SQRDASII--QASPSKFIKSTSRSHSPPDVGVRYSIHSNQTLPPNKKQLQD 238

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BW211.2e-1138.80Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7UP032.8e-0542.11Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3DBP52.8e-0542.11Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7SSW55.2e-0449.30Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
TYK03168.12.71e-1439.55hypothetical protein E5676_scaffold11G00500 [Cucumis melo var. makuwa][more]
KAE8637138.11.11e-1247.01hypothetical protein CSA_015445 [Cucumis sativus] >KAE8637435.1 hypothetical pro... [more]
TYK21002.12.15e-0745.05hypothetical protein E5676_scaffold328G00310 [Cucumis melo var. makuwa][more]
KAE8649393.13.37e-0744.05hypothetical protein Csa_011819, partial [Cucumis sativus][more]
KAA0057592.13.97e-0745.05hypothetical protein E6C27_scaffold497G00670 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 81..142

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0002782.1IVF0002782.1mRNA