IVF0002762 (gene) Melon (IVF77) v1

Overview


Name	IVF0002762
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Ribonuclease E
Location	chr11: 28082797 .. 28083284 (+)
RNA-Seq Expression	IVF0002762
Synteny	IVF0002762

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATACTCCTCAGTAACCGGGAAACAATGGTGGAGGTGGTGATGCGTATTGGAAGCCGACATTTGGTGGGAGGATCACATCTTCAAATGATGGTGGTGGTGAAGAGTCAAGAGGAGGAGGAGATGCAGTCGGAGGTGGTGGAGATTGAACTGGTGGTGGAGGGGAGTAGACAGGTGGAGGCGGAGAATAGACTGGTGGGGGTGGAGAGTAAACCGGTGGTGGTGGAGAGTGGATTGGTGGAGGTGGAGAATGGACCGGCGGTGGTGGAGAATGGACCGGCGGTGGTGGAGAATGGACCGGTGGTGGTGGAGAATGGACCGGTGGAGGTGGAGAATACACCGGTGGTGGTGGAGAATGGATCGGTGGGGGTGGAGAGTAAACTGGTGGTGGTGGAGAGTAGACCGGTGGGGGTGGGGAGTGGACTGGTGGGGGTGGGGAGTGGATGGGAGGTGGTGGGGAGTGGACCGGTGGAGGTGGTGGGGAGTAA

mRNA sequence

ATGATACTCCTCAGTAACCGGGAAACAATGGTGGAGGTGGTGATGCGTATTGGAAGCCGACATTTGGTGGGAGGATCACATCTTCAAATGATGGTGGTGGTGAAGAGTCAAGAGGAGGAGGAGATGCAGTCGGAGGTGGTGGAGATTGAACTGGTGGTGGAGGGGAGTAGACAGGTGGAGGCGGAGAATAGACTGGTGGGGGTGGAGAGTAAACCGGTGGTGGTGGAGAGTGGATTGGTGGAGGTGGAGAATGGACCGGCGGTGGTGGAGAATGGACCGGCGGTGGTGGAGAATGGACCGGTGGTGGTGGAGAATGGACCGGTGGAGGTGGAGAATACACCGGTGGTGGTGGAGAATGGATCGGTGGGGGTGGAGAGTAAACTGTGGACCGGTGGAGGTGGTGGGGAGTAA

Coding sequence (CDS)

ATGATACTCCTCAGTAACCGGGAAACAATGGTGGAGGTGGTGATGCGTATTGGAAGCCGACATTTGGTGGGAGGATCACATCTTCAAATGATGGTGGTGGTGAAGAGTCAAGAGGAGGAGGAGATGCAGTCGGAGGTGGTGGAGATTGAACTGGTGGTGGAGGGGAGTAGACAGGTGGAGGCGGAGAATAGACTGGTGGGGGTGGAGAGTAAACCGGTGGTGGTGGAGAGTGGATTGGTGGAGGTGGAGAATGGACCGGCGGTGGTGGAGAATGGACCGGCGGTGGTGGAGAATGGACCGGTGGTGGTGGAGAATGGACCGGTGGAGGTGGAGAATACACCGGTGGTGGTGGAGAATGGATCGGTGGGGGTGGAGAGTAAACTGTGGACCGGTGGAGGTGGTGGGGAGTAA

Protein sequence

MILLSNRETMVEVVMRIGSRHLVGGSHLQMMVVVKSQEEEEMQSEVVEIELVVEGSRQVEAENRLVGVESKPVVVESGLVEVENGPAVVENGPAVVENGPVVVENGPVEVENTPVVVENGSVGVESKLWTGGGGGE

Homology

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BLAST of IVF0002762 vs. ExPASy TrEMBL
Match: A0A0A0KA06 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G005180 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 1.8e-24
Identity = 88/138 (63.77%), Postives = 100/138 (72.46%), Query Frame = 0


Query: 1   MILLSNRETMVEVVMRIGSRHLVGGSHLQMMVVVKS--QEEEEMQSEVVEIELVVEGSRQ 60
           M LLSNRETMVE VMRIGSR+LVGGSHLQMMVVVK+  +EEEEM  EVVEI LVV  SRQ
Sbjct: 1   MRLLSNRETMVEAVMRIGSRYLVGGSHLQMMVVVKNREEEEEEMTLEVVEIGLVVVESRQ 60

Query: 61  VEAENRLVGVESKPVVVESGLVEVENGPAVVENGPAVVENGPVVVENGPVEVENTPVVVE 120
           V  E++LV VE +PV VES  V V NG   VE+G  VV +G  VVE+  V VE+  V VE
Sbjct: 61  VAVESKLVVVEIEPVEVESRQVGVGNGLGGVESGRGVVGSGQEVVESRQVAVESKQVEVE 120

Query: 121 NGSVGVESKLWTGGGGGE 137
           + SV VE K  +G GGGE
Sbjct: 121 SESVEVERK--SGFGGGE 136

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BLAST of IVF0002762 vs. ExPASy TrEMBL
Match: A0A6J1DXA8 (uncharacterized protein LOC111024355 OS=Momordica charantia OX=3673 GN=LOC111024355 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.8e-08
Identity = 59/128 (46.09%), Postives = 71/128 (55.47%), Query Frame = 0


Query: 1   MILLSNRETMVEVVMRIGSRHLVGGSHLQMMV--VVKSQEEEEMQSEVVEIELVVEGSRQ 60
           M+  S + T+V   MR GS++LV GS  +++V  VV    EEE + EV E  L V GS  
Sbjct: 1   MVSFSIQGTVVAAAMRTGSQYLVAGSRPRILVSPVVVESLEEERRLEVAESGLEVVGSGP 60

Query: 61  VEAENRLVGVESKPVVVESGLVEVENGPAVVENGPAVVENGPVVVENGPVEVENTPVVVE 120
           V  E R V V + PVV  S  V V + P VVEN   VV + PVV  NGP  V N PVV  
Sbjct: 61  VGVERRRVAVGNVPVVEGSEPVVVGSEPVVVENRLVVVGSAPVVEVNGPEVVGNAPVVEV 120

Query: 121 NGSVGVES 127
           NG V V S
Sbjct: 121 NGLVVVGS 128

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BLAST of IVF0002762 vs. ExPASy TrEMBL
Match: A0A0Q8DRE5 (Ribonuclease E OS=Nocardioides sp. Root614 OX=1736571 GN=ASD81_22375 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 3.5e-04
Identity = 41/94 (43.62%), Postives = 46/94 (48.94%), Query Frame = 0


Query: 32  VVVKSQEEEEMQSEVVEIELVVEGSRQVEAENRLVGVESKPVVVESGLVEVENGPAVVEN 91
           V   ++  +E   +  +   VV     V  E   V VE  PVVVE   V VE  P VVE 
Sbjct: 877 VAAMAKHADEAHEDATDEAPVVVDEAPVVVEEAPVVVEEAPVVVEEAPVVVEETPVVVEE 936

Query: 92  GPAVVENGPVVVENGPVEVENTPVVVENGSVGVE 126
            P VVE  PVVVE   V VE  PVVVE   V VE
Sbjct: 937 APVVVEEAPVVVEEAAVVVEEAPVVVEEAPVVVE 970

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BLAST of IVF0002762 vs. ExPASy TrEMBL
Match: A0A0Q8HQW8 (Ribonuclease E OS=Nocardioides sp. Root682 OX=1736586 GN=ASD84_19240 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 3.5e-04
Identity = 41/94 (43.62%), Postives = 46/94 (48.94%), Query Frame = 0


Query: 32  VVVKSQEEEEMQSEVVEIELVVEGSRQVEAENRLVGVESKPVVVESGLVEVENGPAVVEN 91
           V   ++  +E   +  +   VV     V  E   V VE  PVVVE   V VE  P VVE 
Sbjct: 877 VAAMAKHADEAHEDATDEAPVVVDEAPVVVEEAPVVVEEAPVVVEEAPVVVEETPVVVEE 936

Query: 92  GPAVVENGPVVVENGPVEVENTPVVVENGSVGVE 126
            P VVE  PVVVE   V VE  PVVVE   V VE
Sbjct: 937 APVVVEEAPVVVEEAAVVVEEAPVVVEEAPVVVE 970

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BLAST of IVF0002762 vs. ExPASy TrEMBL
Match: U6LFW5 (UmuC domain-containing protein OS=Eimeria brunetti OX=51314 GN=EBH_0025170 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 4.6e-04
Identity = 31/60 (51.67%), Postives = 38/60 (63.33%), Query Frame = 0


Query: 66  VGVESKPVVVESGLVEVENGPAVVENGPAVVENGPVVVENGPVEVENTPVVVENGSVGVE 125
           +GVE  P  VE G  +VE GP  VE GP  VE GP+ VE GP +VE  P+ +E G +GVE
Sbjct: 891 LGVEGGPPDVERGPPDVEGGPLDVEGGPPDVEGGPLGVEGGPPDVEGGPLDLEGGPLGVE 950

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BLAST of IVF0002762 vs. NCBI nr
Match: XP_022157699.1 (uncharacterized protein LOC111024355, partial [Momordica charantia])

HSP 1 Score: 66.2 bits (160), Expect = 9.50e-11
Identity = 59/128 (46.09%), Postives = 71/128 (55.47%), Query Frame = 0


Query: 1   MILLSNRETMVEVVMRIGSRHLVGGSHLQMMV--VVKSQEEEEMQSEVVEIELVVEGSRQ 60
           M+  S + T+V   MR GS++LV GS  +++V  VV    EEE + EV E  L V GS  
Sbjct: 1   MVSFSIQGTVVAAAMRTGSQYLVAGSRPRILVSPVVVESLEEERRLEVAESGLEVVGSGP 60

Query: 61  VEAENRLVGVESKPVVVESGLVEVENGPAVVENGPAVVENGPVVVENGPVEVENTPVVVE 120
           V  E R V V + PVV  S  V V + P VVEN   VV + PVV  NGP  V N PVV  
Sbjct: 61  VGVERRRVAVGNVPVVEGSEPVVVGSEPVVVENRLVVVGSAPVVEVNGPEVVGNAPVVEV 120

Query: 121 NGSVGVES 126
           NG V V S
Sbjct: 121 NGLVVVGS 128

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BLAST of IVF0002762 vs. NCBI nr
Match: WP_182377257.1 (Rne/Rng family ribonuclease [Nocardioides sp. WS12])

HSP 1 Score: 58.2 bits (139), Expect = 1.09e-06
Identity = 34/58 (58.62%), Postives = 35/58 (60.34%), Query Frame = 0


Query: 68  VESKPVVVESGLVEVENGPAVVENGPAVVENGPVVVENGPVEVENTPVVVENGSVGVE 125
           V+  PVVVE   V VE  P VVE  P VVE  PVVVE  PV VE  PVVVE   V VE
Sbjct: 924 VDEAPVVVEEAPVVVEEAPVVVEEAPVVVEEAPVVVEEAPVVVEEAPVVVEEAPVVVE 981

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BLAST of IVF0002762 vs. NCBI nr
Match: KRA29761.1 (ribonuclease E [Nocardioides sp. Root614] >KRA88479.1 ribonuclease E [Nocardioides sp. Root682])

HSP 1 Score: 58.2 bits (139), Expect = 1.09e-06
Identity = 34/58 (58.62%), Postives = 36/58 (62.07%), Query Frame = 0


Query: 68  VESKPVVVESGLVEVENGPAVVENGPAVVENGPVVVENGPVEVENTPVVVENGSVGVE 125
           V+  PVVVE   V VE  P VVE  P VVE  PVVVE  PV VE  PVVVE  +V VE
Sbjct: 899 VDEAPVVVEEAPVVVEEAPVVVEEAPVVVEETPVVVEEAPVVVEEAPVVVEEAAVVVE 956

[Close]

BLAST of IVF0002762 vs. NCBI nr
Match: WP_082574109.1 (MULTISPECIES: Rne/Rng family ribonuclease [unclassified Nocardioides])

HSP 1 Score: 58.2 bits (139), Expect = 1.09e-06
Identity = 34/58 (58.62%), Postives = 36/58 (62.07%), Query Frame = 0


Query: 68  VESKPVVVESGLVEVENGPAVVENGPAVVENGPVVVENGPVEVENTPVVVENGSVGVE 125
           V+  PVVVE   V VE  P VVE  P VVE  PVVVE  PV VE  PVVVE  +V VE
Sbjct: 908 VDEAPVVVEEAPVVVEEAPVVVEEAPVVVEETPVVVEEAPVVVEEAPVVVEEAAVVVE 965

[Close]

BLAST of IVF0002762 vs. NCBI nr
Match: KAG7169981.1 (Nitric oxide synthase-like [Homarus americanus])

HSP 1 Score: 55.8 bits (133), Expect = 6.58e-06
Identity = 33/65 (50.77%), Postives = 37/65 (56.92%), Query Frame = 0


Query: 62  ENRLVGVESKPVVVESGLVEVENGPAVVENGPAVVENGPVVVENGPVEVENTPVVVENGS 121
           EN    VE+ P  VE+    VEN P  VEN PA VEN P  VEN P  VEN+P  VEN  
Sbjct: 393 ENNPASVENSPPSVENSPPSVENSPPSVENNPASVENSPPSVENSPPSVENSPPSVENSP 452

Query: 122 VGVES 126
             VE+
Sbjct: 453 PSVEN 457

The following BLAST results are available for this feature:

BLAST of IVF0002762 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0002762 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KA06	1.8e-24	63.77	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G005180 PE=4 SV=1	[more]
A0A6J1DXA8	1.8e-08	46.09	uncharacterized protein LOC111024355 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A0Q8DRE5	3.5e-04	43.62	Ribonuclease E OS=Nocardioides sp. Root614 OX=1736571 GN=ASD81_22375 PE=4 SV=1	[more]
A0A0Q8HQW8	3.5e-04	43.62	Ribonuclease E OS=Nocardioides sp. Root682 OX=1736586 GN=ASD84_19240 PE=4 SV=1	[more]
U6LFW5	4.6e-04	51.67	UmuC domain-containing protein OS=Eimeria brunetti OX=51314 GN=EBH_0025170 PE=4 ...	[more]

BLAST of IVF0002762 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022157699.1	9.50e-11	46.09	uncharacterized protein LOC111024355, partial [Momordica charantia]	[more]
WP_182377257.1	1.09e-06	58.62	Rne/Rng family ribonuclease [Nocardioides sp. WS12]	[more]
KRA29761.1	1.09e-06	58.62	ribonuclease E [Nocardioides sp. Root614] >KRA88479.1 ribonuclease E [Nocardioid...	[more]
WP_082574109.1	1.09e-06	58.62	MULTISPECIES: Rne/Rng family ribonuclease [unclassified Nocardioides]	[more]
KAG7169981.1	6.58e-06	50.77	Nitric oxide synthase-like [Homarus americanus]	[more]

BLAST of IVF0002762 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0002762.1	IVF0002762.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090304	nucleic acid metabolic process
molecular_function	GO:0005488	binding