IVF0002749 (gene) Melon (IVF77) v1

Overview
NameIVF0002749
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Locationchr04: 14839616 .. 14840041 (+)
RNA-Seq ExpressionIVF0002749
SyntenyIVF0002749
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGGATGGGAACGAAGAGTTTTCGTCCATATACAGCCAGGGGATTGACATGTCCCAGGAGGATGTACATGCATCACAACCTGCTCACACATCAAACAGTAGGGCCAGATCGAGCAGATTGAAGAGAAAGAGGGGAAGCCAGCAGAAGGGTGAGATTAAAGTCATACATATGGCCCTCAAGTGTATGAATGACCAACTCAAGAAGATTGTCGAGTGGCATGCACGCGCCCTTGCCAATAACACCCACGTGCACCAGGAATTCATACGCCTATTGCGTGAGATGTCGGAACTAAGCAATTTGGATAGGGCATTGTGCCAAAGGCATCTGATGTCTCATATGGACGACATGTGGGGTTTTGTACAAATGACTAACGATGAGAGGCAGAACTTTTGTAGAGTCCTCCTACGAGACTTCTCTAGATAG

mRNA sequence

ATGTCGGATGGGAACGAAGAGTTTTCGTCCATATACAGCCAGGGGATTGACATGTCCCAGGAGGATGTACATGCATCACAACCTGCTCACACATCAAACAGTAGGGCCAGATCGAGCAGATTGAAGAGAAAGAGGGGAAGCCAGCAGAAGGGTGAGATTAAAGTCATACATATGGCCCTCAAGTGTATGAATGACCAACTCAAGAAGATTGTCGAGTGGCATGCACGCGCCCTTGCCAATAACACCCACGTGCACCAGGAATTCATACGCCTATTGCGTGAGATGTCGGAACTAAGCAATTTGGATAGGGCATTGTGCCAAAGGCATCTGATGTCTCATATGGACGACATGTGGGGTTTTGTACAAATGACTAACGATGAGAGGCAGAACTTTTGTAGAGTCCTCCTACGAGACTTCTCTAGATAG

Coding sequence (CDS)

ATGTCGGATGGGAACGAAGAGTTTTCGTCCATATACAGCCAGGGGATTGACATGTCCCAGGAGGATGTACATGCATCACAACCTGCTCACACATCAAACAGTAGGGCCAGATCGAGCAGATTGAAGAGAAAGAGGGGAAGCCAGCAGAAGGGTGAGATTAAAGTCATACATATGGCCCTCAAGTGTATGAATGACCAACTCAAGAAGATTGTCGAGTGGCATGCACGCGCCCTTGCCAATAACACCCACGTGCACCAGGAATTCATACGCCTATTGCGTGAGATGTCGGAACTAAGCAATTTGGATAGGGCATTGTGCCAAAGGCATCTGATGTCTCATATGGACGACATGTGGGGTTTTGTACAAATGACTAACGATGAGAGGCAGAACTTTTGTAGAGTCCTCCTACGAGACTTCTCTAGATAG

Protein sequence

MSDGNEEFSSIYSQGIDMSQEDVHASQPAHTSNSRARSSRLKRKRGSQQKGEIKVIHMALKCMNDQLKKIVEWHARALANNTHVHQEFIRLLREMSELSNLDRALCQRHLMSHMDDMWGFVQMTNDERQNFCRVLLRDFSR
Homology
BLAST of IVF0002749 vs. ExPASy TrEMBL
Match: A0A5A7U9D5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold323G00780 PE=4 SV=1)

HSP 1 Score: 280.8 bits (717), Expect = 3.1e-72
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0

Query: 1   MSDGNEEFSSIYSQGIDMSQEDVHASQPAHTSNSRARSSRLKRKRGSQQKGEIKVIHMAL 60
           MSDGNEEFSSIYSQGIDMSQEDVHASQPAHTSNSRARSSRLKRKRGSQQKGEIKVIHMAL
Sbjct: 54  MSDGNEEFSSIYSQGIDMSQEDVHASQPAHTSNSRARSSRLKRKRGSQQKGEIKVIHMAL 113

Query: 61  KCMNDQLKKIVEWHARALANNTHVHQEFIRLLREMSELSNLDRALCQRHLMSHMDDMWGF 120
           KCMNDQLKKIVEWHARALANNTHVHQEFIRLLREMSELSNLDRALCQRHLMSHMDDMWGF
Sbjct: 114 KCMNDQLKKIVEWHARALANNTHVHQEFIRLLREMSELSNLDRALCQRHLMSHMDDMWGF 173

Query: 121 VQMTNDERQNFCRVLLRDFSR 142
           VQMTNDERQNFCRVLLRDFSR
Sbjct: 174 VQMTNDERQNFCRVLLRDFSR 194

BLAST of IVF0002749 vs. ExPASy TrEMBL
Match: A0A5A7U4I8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G001180 PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 1.4e-48
Identity = 103/141 (73.05%), Postives = 117/141 (82.98%), Query Frame = 0

Query: 1   MSDGNEEFSSIYSQGIDMSQEDVHASQPAHTSNSRARSSRLKRKRGSQQKGEIKVIHMAL 60
           M DGNEEF S+YSQGIDMSQEDV AS+P+HTS  R RSS  KRKR SQQKGEI+VIHMA+
Sbjct: 79  MLDGNEEFPSMYSQGIDMSQEDVRASRPSHTSKGRIRSSGSKRKRESQQKGEIEVIHMAI 138

Query: 61  KCMNDQLKKIVEWHARALANNTHVHQEFIRLLREMSELSNLDRALCQRHLMSHMDDMWGF 120
           +C NDQL+ I EW ARALAN+THV QE +RLL  M EL++LDR LCQRHL+S MDDM GF
Sbjct: 139 ECTNDQLRTIAEWPARALANDTHVRQELLRLLHVMPELTSLDRVLCQRHLLSRMDDMRGF 198

Query: 121 VQMTNDERQNFCRVLLRDFSR 142
           +QM +DERQNFCRVLL D SR
Sbjct: 199 IQMIDDERQNFCRVLLGDISR 219

BLAST of IVF0002749 vs. ExPASy TrEMBL
Match: A0A5D3BQI7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold49G00550 PE=3 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 1.3e-41
Identity = 94/142 (66.20%), Postives = 113/142 (79.58%), Query Frame = 0

Query: 1   MSDGNE-EFSSIYSQGIDMSQEDVHASQPAHTSNSRARSSRLKRKRGSQQKGEIKVIHMA 60
           MSDGN+ EF  +YSQGID+SQ+DV  SQPA TS+ R RSS  KRKRGSQ++GE+ VI+MA
Sbjct: 231 MSDGNDIEFPFMYSQGIDISQDDVRTSQPACTSDGRIRSSESKRKRGSQREGELDVINMA 290

Query: 61  LKCMNDQLKKIVEWHARALANNTHVHQEFIRLLREMSELSNLDRALCQRHLMSHMDDMWG 120
           LKCMNDQL+ I+EW  R  AN T V QEF+RLL EM +LS+LDR LCQR LM  +DDM  
Sbjct: 291 LKCMNDQLRTIIEWPTRPFANETFVRQEFLRLLCEMPDLSSLDRELCQRQLMCSIDDMRS 350

Query: 121 FVQMTNDERQNFCRVLLRDFSR 142
           FV+MT++ER+NFCRV LRD SR
Sbjct: 351 FVEMTDEERKNFCRVFLRDVSR 372

BLAST of IVF0002749 vs. ExPASy TrEMBL
Match: A0A5A7V026 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00100 PE=3 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 1.1e-40
Identity = 92/141 (65.25%), Postives = 108/141 (76.60%), Query Frame = 0

Query: 1   MSDGNEEFSSIYSQGIDMSQEDVHASQPAHTSNSRARSSRLKRKRGSQQKGEIKVIHMAL 60
           M + NEEF S+YSQGID+SQEDV AS+ +  S  R  SS+ KRKRGSQ++ EIKVIHM L
Sbjct: 217 MPNRNEEFPSVYSQGIDISQEDVRASRSSCVSEGRVESSKSKRKRGSQREVEIKVIHMVL 276

Query: 61  KCMNDQLKKIVEWHARALANNTHVHQEFIRLLREMSELSNLDRALCQRHLMSHMDDMWGF 120
           +C NDQLK I EW A  LAN+ HVHQEF  +L EM EL+ LDR+L QRHL+SHM DM GF
Sbjct: 277 ECTNDQLKMITEWPACPLANDNHVHQEFFLILHEMPELTILDRSLLQRHLLSHMGDMRGF 336

Query: 121 VQMTNDERQNFCRVLLRDFSR 142
            QM NDER +FCRV+LRD SR
Sbjct: 337 KQMPNDERASFCRVILRDISR 357

BLAST of IVF0002749 vs. ExPASy TrEMBL
Match: A0A5D3E5U2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G001980 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 7.1e-40
Identity = 87/141 (61.70%), Postives = 109/141 (77.30%), Query Frame = 0

Query: 1   MSDGNEEFSSIYSQGIDMSQEDVHASQPAHTSNSRARSSRLKRKRGSQQKGEIKVIHMAL 60
           M DGNE+FSS+YSQG+D+SQ+DV AS+P+  S  R RSS  KRKRGSQ+  +++ IH+AL
Sbjct: 57  MGDGNEDFSSVYSQGVDISQDDVRASRPSRASEGRTRSSGSKRKRGSQRDFDVEAIHLAL 116

Query: 61  KCMNDQLKKIVEWHARALANNTHVHQEFIRLLREMSELSNLDRALCQRHLMSHMDDMWGF 120
              N+QL++I EW AR LAN+ HV  EF R+LREM EL++LDRAL QRHL+S MDD+ GF
Sbjct: 117 DQTNEQLRQIAEWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGF 176

Query: 121 VQMTNDERQNFCRVLLRDFSR 142
           V M  DER+ FCRVLLRD  R
Sbjct: 177 VLMPEDEREGFCRVLLRDIER 197

BLAST of IVF0002749 vs. NCBI nr
Match: KAA0050806.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK08539.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 280 bits (715), Expect = 4.88e-94
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0

Query: 1   MSDGNEEFSSIYSQGIDMSQEDVHASQPAHTSNSRARSSRLKRKRGSQQKGEIKVIHMAL 60
           MSDGNEEFSSIYSQGIDMSQEDVHASQPAHTSNSRARSSRLKRKRGSQQKGEIKVIHMAL
Sbjct: 54  MSDGNEEFSSIYSQGIDMSQEDVHASQPAHTSNSRARSSRLKRKRGSQQKGEIKVIHMAL 113

Query: 61  KCMNDQLKKIVEWHARALANNTHVHQEFIRLLREMSELSNLDRALCQRHLMSHMDDMWGF 120
           KCMNDQLKKIVEWHARALANNTHVHQEFIRLLREMSELSNLDRALCQRHLMSHMDDMWGF
Sbjct: 114 KCMNDQLKKIVEWHARALANNTHVHQEFIRLLREMSELSNLDRALCQRHLMSHMDDMWGF 173

Query: 121 VQMTNDERQNFCRVLLRDFSR 141
           VQMTNDERQNFCRVLLRDFSR
Sbjct: 174 VQMTNDERQNFCRVLLRDFSR 194

BLAST of IVF0002749 vs. NCBI nr
Match: KAA0050190.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ98219.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 201 bits (511), Expect = 1.23e-62
Identity = 103/141 (73.05%), Postives = 117/141 (82.98%), Query Frame = 0

Query: 1   MSDGNEEFSSIYSQGIDMSQEDVHASQPAHTSNSRARSSRLKRKRGSQQKGEIKVIHMAL 60
           M DGNEEF S+YSQGIDMSQEDV AS+P+HTS  R RSS  KRKR SQQKGEI+VIHMA+
Sbjct: 79  MLDGNEEFPSMYSQGIDMSQEDVRASRPSHTSKGRIRSSGSKRKRESQQKGEIEVIHMAI 138

Query: 61  KCMNDQLKKIVEWHARALANNTHVHQEFIRLLREMSELSNLDRALCQRHLMSHMDDMWGF 120
           +C NDQL+ I EW ARALAN+THV QE +RLL  M EL++LDR LCQRHL+S MDDM GF
Sbjct: 139 ECTNDQLRTIAEWPARALANDTHVRQELLRLLHVMPELTSLDRVLCQRHLLSRMDDMRGF 198

Query: 121 VQMTNDERQNFCRVLLRDFSR 141
           +QM +DERQNFCRVLL D SR
Sbjct: 199 IQMIDDERQNFCRVLLGDISR 219

BLAST of IVF0002749 vs. NCBI nr
Match: TYK01823.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 171 bits (433), Expect = 7.45e-52
Identity = 88/141 (62.41%), Postives = 108/141 (76.60%), Query Frame = 0

Query: 1   MSDGNEEFSSIYSQGIDMSQEDVHASQPAHTSNSRARSSRLKRKRGSQQKGEIKVIHMAL 60
           M DGNE+FS +YSQGID+SQ+DV AS+P+  S  R RSS  KRKRGSQ+  E++ IH+AL
Sbjct: 1   MGDGNEDFSPVYSQGIDLSQDDVRASRPSRASEGRTRSSGSKRKRGSQRDFELEAIHLAL 60

Query: 61  KCMNDQLKKIVEWHARALANNTHVHQEFIRLLREMSELSNLDRALCQRHLMSHMDDMWGF 120
              N+QL++IVEW A  LAN+ HV  EF R+LREM EL++LDRAL QRHL+S MDD+ GF
Sbjct: 61  DQTNEQLRQIVEWPASNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGF 120

Query: 121 VQMTNDERQNFCRVLLRDFSR 141
           V M  DER+ FCRVLLRD  R
Sbjct: 121 VLMPEDEREEFCRVLLRDIER 141

BLAST of IVF0002749 vs. NCBI nr
Match: KAA0033884.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK01268.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 178 bits (451), Expect = 1.05e-51
Identity = 94/142 (66.20%), Postives = 113/142 (79.58%), Query Frame = 0

Query: 1   MSDGNE-EFSSIYSQGIDMSQEDVHASQPAHTSNSRARSSRLKRKRGSQQKGEIKVIHMA 60
           MSDGN+ EF  +YSQGID+SQ+DV  SQPA TS+ R RSS  KRKRGSQ++GE+ VI+MA
Sbjct: 231 MSDGNDIEFPFMYSQGIDISQDDVRTSQPACTSDGRIRSSESKRKRGSQREGELDVINMA 290

Query: 61  LKCMNDQLKKIVEWHARALANNTHVHQEFIRLLREMSELSNLDRALCQRHLMSHMDDMWG 120
           LKCMNDQL+ I+EW  R  AN T V QEF+RLL EM +LS+LDR LCQR LM  +DDM  
Sbjct: 291 LKCMNDQLRTIIEWPTRPFANETFVRQEFLRLLCEMPDLSSLDRELCQRQLMCSIDDMRS 350

Query: 121 FVQMTNDERQNFCRVLLRDFSR 141
           FV+MT++ER+NFCRV LRD SR
Sbjct: 351 FVEMTDEERKNFCRVFLRDVSR 372

BLAST of IVF0002749 vs. NCBI nr
Match: TYK30971.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 172 bits (436), Expect = 1.51e-51
Identity = 87/141 (61.70%), Postives = 109/141 (77.30%), Query Frame = 0

Query: 1   MSDGNEEFSSIYSQGIDMSQEDVHASQPAHTSNSRARSSRLKRKRGSQQKGEIKVIHMAL 60
           M DGNE+FSS+YSQG+D+SQ+DV AS+P+  S  R RSS  KRKRGSQ+  +++ IH+AL
Sbjct: 57  MGDGNEDFSSVYSQGVDISQDDVRASRPSRASEGRTRSSGSKRKRGSQRDFDVEAIHLAL 116

Query: 61  KCMNDQLKKIVEWHARALANNTHVHQEFIRLLREMSELSNLDRALCQRHLMSHMDDMWGF 120
              N+QL++I EW AR LAN+ HV  EF R+LREM EL++LDRAL QRHL+S MDD+ GF
Sbjct: 117 DQTNEQLRQIAEWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGF 176

Query: 121 VQMTNDERQNFCRVLLRDFSR 141
           V M  DER+ FCRVLLRD  R
Sbjct: 177 VLMPEDEREGFCRVLLRDIER 197

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7U9D53.1e-72100.00Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7U4I81.4e-4873.05Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BQI71.3e-4166.20Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7V0261.1e-4065.25Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3E5U27.1e-4061.70Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
KAA0050806.14.88e-94100.00retrotransposon protein [Cucumis melo var. makuwa] >TYK08539.1 retrotransposon p... [more]
KAA0050190.11.23e-6273.05retrotransposon protein [Cucumis melo var. makuwa] >TYJ98219.1 retrotransposon p... [more]
TYK01823.17.45e-5262.41retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0033884.11.05e-5166.20retrotransposon protein [Cucumis melo var. makuwa] >TYK01268.1 retrotransposon p... [more]
TYK30971.11.51e-5161.70retrotransposon protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 19..35
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 19..52

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0002749.1IVF0002749.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding