IVF0002730 (gene) Melon (IVF77) v1

Overview


Name	IVF0002730
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr03: 9474091 .. 9474270 (-)
RNA-Seq Expression	IVF0002730
Synteny	IVF0002730

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAGATTAAACGATATAAATAAAGAATTTAAAAATAAGAAAGATGATGGAAAGAAATCGCAAAAAAGAAAAAGAGAAAAGAAGAAAGATGAAATCGTAGGGGAAGATGGGGAAGACGAAATAACACGAGGAAGACGAATTACGAGGAAGAAAAGAAATATAAAAGGGCAAACCTAG

mRNA sequence

ATGGAAAGATTAAACGATATAAATAAAGAATTTAAAAATAAGAAAGATGATGGAAAGAAATCGCAAAAAAGAAAAAGAGAAAAGAAGAAAGATGAAATCGTAGGGGAAGATGGGGAAGACGAAATAACACGAGGAAGACGAATTACGAGGAAGAAAAGAAATATAAAAGGGCAAACCTAG

Coding sequence (CDS)

ATGGAAAGATTAAACGATATAAATAAAGAATTTAAAAATAAGAAAGATGATGGAAAGAAATCGCAAAAAAGAAAAAGAGAAAAGAAGAAAGATGAAATCGTAGGGGAAGATGGGGAAGACGAAATAACACGAGGAAGACGAATTACGAGGAAGAAAAGAAATATAAAAGGGCAAACCTAG

Protein sequence

MERLNDINKEFKNKKDDGKKSQKRKREKKKDEIVGEDGEDEITRGRRITRKKRNIKGQT

Homology

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BLAST of IVF0002730 vs. NCBI nr
Match: KAA0033511.1 (hypothetical protein E6C27_scaffold261G00530 [Cucumis melo var. makuwa])

HSP 1 Score: 48.1 bits (113), Expect = 1.96e-04
Identity = 25/39 (64.10%), Postives = 33/39 (84.62%), Query Frame = 0


Query: 21 SQKRKREKKKDEIVGEDGEDEITRGRRITRKKRNIKGQT 59
          ++K+++E KKDEI GEDG+DEIT GRRI RK R ++GQT
Sbjct: 5  NRKKEKENKKDEIAGEDGKDEITGGRRIARKNRKMEGQT 43

The following BLAST results are available for this feature:

BLAST of IVF0002730 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0002730 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0002730 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0033511.1	1.96e-04	64.10	hypothetical protein E6C27_scaffold261G00530 [Cucumis melo var. makuwa]	[more]

BLAST of IVF0002730 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..59
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..47
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..17

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0002730.1	IVF0002730.1	mRNA