IVF0002571 (gene) Melon (IVF77) v1

Overview
NameIVF0002571
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionPathogen-induced protein CuPi1
Locationchr01: 3509037 .. 3509765 (+)
RNA-Seq ExpressionIVF0002571
SyntenyIVF0002571
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCTCCAAAACAACTTCAATTGGAAAGAAATCAGAATGAGTAGTGGAAAGGGACGTCGTTATTCATTCCTTGCTTTTTTCTTCTTCTTCATTCTCTTCATCTCCTCCGAGGTGACTGCAGCAAGGAAGCTGAAGATGGTCCAAAAGAATGGTGAGTTTCTATTTATATTATGATCGATGTTATGTAGCATTGAAAATGATTGTTATTATGAAACAAATTTTGATAAAATTCAACGTGAAAGGAAGGACGACTAAATTGAAAATTATTGATTAAAAACGAACTATTTGTTGATTTATTTGTAATGGTCTCCAAACGCAGAACAGAGATCAATTAGCATCAGCCCGAGAACAGGAATCCGCAACAAACCGGTCTGCGGTCGTAGCGGTCGTTATACCGATTGCATCCCTAGAAATAAGCCACCAAGTGAAAGGTGCAGTCCCTATGTTAGAGGATGCAGCCCGCCGTAGACCGAGTACTATCACCTATTTCTCTGCAAATGATCAATAAATCATTCCAAAATCACATGGATTGAAATCTTGTTTTAAATTGTTTGTGTATTAATTTATCCTTTGAAATAAAAAGTGTGTGTGTATAATTCATATATATAGTAGTTTATATATATGATATTTCACTTTGGAGTTCAGTGTGTTTTTTATTGTATGATCTCTATGTATTCAGAATCATTTGGACTTTCCAATATATATATATATATTACCAAACGTTTGAACT

mRNA sequence

ATCTCCAAAACAACTTCAATTGGAAAGAAATCAGAATGAGTAGTGGAAAGGGACGTCGTTATTCATTCCTTGCTTTTTTCTTCTTCTTCATTCTCTTCATCTCCTCCGAGGTGACTGCAGCAAGGAAGCTGAAGATGGTCCAAAAGAATGAACAGAGATCAATTAGCATCAGCCCGAGAACAGGAATCCGCAACAAACCGGTCTGCGGTCGTAGCGGTCGTTATACCGATTGCATCCCTAGAAATAAGCCACCAAGTGAAAGGTGCAGTCCCTATGTTAGAGGATGCAGCCCGCCGTAGACCGAGTACTATCACCTATTTCTCTGCAAATGATCAATAAATCATTCCAAAATCACATGGATTGAAATCTTGTTTTAAATTGTTTGTGTATTAATTTATCCTTTGAAATAAAAAGTGTGTGTGTATAATTCATATATATAGTAGTTTATATATATGATATTTCACTTTGGAGTTCAGTGTGTTTTTTATTGTATGATCTCTATGTATTCAGAATCATTTGGACTTTCCAATATATATATATATATTACCAAACGTTTGAACT

Coding sequence (CDS)

ATGAGTAGTGGAAAGGGACGTCGTTATTCATTCCTTGCTTTTTTCTTCTTCTTCATTCTCTTCATCTCCTCCGAGGTGACTGCAGCAAGGAAGCTGAAGATGGTCCAAAAGAATGAACAGAGATCAATTAGCATCAGCCCGAGAACAGGAATCCGCAACAAACCGGTCTGCGGTCGTAGCGGTCGTTATACCGATTGCATCCCTAGAAATAAGCCACCAAGTGAAAGGTGCAGTCCCTATGTTAGAGGATGCAGCCCGCCGTAG

Protein sequence

MSSGKGRRYSFLAFFFFFILFISSEVTAARKLKMVQKNEQRSISISPRTGIRNKPVCGRSGRYTDCIPRNKPPSERCSPYVRGCSPP
Homology
[Close]
BLAST of IVF0002571 vs. ExPASy TrEMBL
Match: O24512 (Pathogen-induced protein CuPi1 OS=Cucumis sativus OX=3659 GN=Csa_7G037610 PE=2 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.1e-27
Identity = 63/87 (72.41%), Postives = 73/87 (83.91%), Query Frame = 0 

Query: 1  MSSGKGRRYSFLAFFFFFILFISSEVTAARKLKMVQKNEQRSISISPRTGIRNKPVCGRS 60
          MSSGKGR YS LAFFFFF+LFISSEVTAARKLKM Q NE+  + ++PRT IRNKP+C  S
Sbjct: 1  MSSGKGRGYSLLAFFFFFVLFISSEVTAARKLKMHQNNEKGIVYLTPRTAIRNKPICDGS 60

Query: 61 GRYTDCIPRNKPPSERCSPYVRGCSPP 88
          G Y+ CIPR+KPP E+C+PYVRGCS P
Sbjct: 61 GPYSRCIPRSKPPKEKCNPYVRGCSLP 87

[Close]
BLAST of IVF0002571 vs. NCBI nr
Match: XP_004144528.1 (uncharacterized protein LOC101208804 [Cucumis sativus] >AAB71340.1 pathogen-induced protein CuPi1 [Cucumis sativus] >KGN43457.1 hypothetical protein Csa_020505 [Cucumis sativus])

HSP 1 Score: 132 bits (333), Expect = 2.81e-38
Identity = 62/85 (72.94%), Postives = 72/85 (84.71%), Query Frame = 0 

Query: 1  MSSGKGRRYSFLAFFFFFILFISSEVTAARKLKMVQKNEQRSISISPRTGIRNKPVCGRS 60
          MSSGKGR YS LAFFFFF+LFISSEVTAARKLKM Q NE+  + ++PRT IRNKP+C  S
Sbjct: 1  MSSGKGRGYSLLAFFFFFVLFISSEVTAARKLKMHQNNEKGIVYLTPRTAIRNKPICDGS 60

Query: 61 GRYTDCIPRNKPPSERCSPYVRGCS 85
          G Y+ CIPR+KPP E+C+PYVRGCS
Sbjct: 61 GPYSRCIPRSKPPKEKCNPYVRGCS 85

[Close]
BLAST of IVF0002571 vs. NCBI nr
Match: KAG6589128.1 (hypothetical protein SDJN03_17693, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 51.2 bits (121), Expect = 3.53e-06
Identity = 35/83 (42.17%), Postives = 45/83 (54.22%), Query Frame = 0 

Query: 5  KGRRYS-FLAFFFFFILFISSEVTAARKLKMVQKNEQRSISISPRTGIRNKPVCGRSGRY 64
           GR+ S FLAF  FF L +SSE+ AARKL +  KN     +++PRT     P C R+  Y
Sbjct: 2  SGRKVSVFLAFLLFFFL-VSSELGAARKLMVAGKNA----AVNPRTQDSYDPYCDRNS-Y 61

Query: 65 TDCIPRNKPPSERCSPYVRGCSP 86
            C+P      + C PYV  C P
Sbjct: 62 RSCLP------QACDPYVEYCPP 72

[Close]
BLAST of IVF0002571 vs. NCBI nr
Match: KAA8532774.1 (hypothetical protein F0562_032807 [Nyssa sinensis])

HSP 1 Score: 46.6 bits (109), Expect = 2.61e-04
Identity = 30/70 (42.86%), Postives = 42/70 (60.00%), Query Frame = 0 

Query: 19 ILFISSEVTAARKLKMVQKNEQRSISISPRTGIRNKPVCGRSGRYTDCIPRNKPPS-ERC 78
          ++FIS  +TAAR+L     N   +++  P   I   P+CGR+  Y  C+PRN PPS ++C
Sbjct: 17 VIFISP-ITAARRLL---DNGFATVNPIP---IGQGPICGRNNPYRGCLPRNIPPSPKKC 76

Query: 79 SPYVRGCSPP 87
           PY R C PP
Sbjct: 77 KPYER-CRPP 78

The following BLAST results are available for this feature:
BLAST of IVF0002571 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0002571 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
O245121.1e-2772.41Pathogen-induced protein CuPi1 OS=Cucumis sativus OX=3659 GN=Csa_7G037610 PE=2 S... [more]
BLAST of IVF0002571 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004144528.12.81e-3872.94uncharacterized protein LOC101208804 [Cucumis sativus] >AAB71340.1 pathogen-indu... [more]
KAG6589128.13.53e-0642.17hypothetical protein SDJN03_17693, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA8532774.12.61e-0442.86hypothetical protein F0562_032807 [Nyssa sinensis][more]
BLAST of IVF0002571 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0002571.2IVF0002571.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005576 extracellular region