IVF0002394 (gene) Melon (IVF77) v1

Overview
NameIVF0002394
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionUnknown protein
Locationchr07: 18566414 .. 18566707 (-)
RNA-Seq ExpressionIVF0002394
SyntenyIVF0002394
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCAACTCGTCGGTCGTCGCCATTCGACAACGAATGCGAGACACCGTCATCCGCCGCATTGTTTCCATCTCAGCCAATCGTTCGTTCTGCGTCGTCGTCTGTCGTGCATCAGCGCCGTCAACGAGCCATCTCCATTCGTCGTTGGAGCTTCATCTAGCTGCGTTAGAGATCGCCGCGTGCAGTCTTCAGCCACGTCCCGCAAGTCGTACCCGAGTCGTACGTGCACTCCGGTCGAGTCACGTCGAGCGATCTTCCAGCCGTGTCTCGTCCCAGCCGTGCGTGCGTGTATGA

mRNA sequence

ATGCTCAACTCGTCGGTCGTCGCCATTCGACAACGAATGCGAGACACCGTCATCCGCCGCATTGTTTCCATCTCAGCCAATCGTTCGTTCTGCGTCGTCGTCTGTCGTGCATCAGCGCCGTCAACGAGCCATCTCCATTCGTCGTTGGAGCTTCATCTAGCTGCGTTAGAGATCGCCGCGTGCAGTCTTCAGCCACGTCCCGCAAGTCGTACCCGAGTCGTACGTGCACTCCGGTCGAGTCACGTCGAGCGATCTTCCAGCCGTGTCTCGTCCCAGCCGTGCGTGCGTGTATGA

Coding sequence (CDS)

ATGCTCAACTCGTCGGTCGTCGCCATTCGACAACGAATGCGAGACACCGTCATCCGCCGCATTGTTTCCATCTCAGCCAATCGTTCGTTCTGCGTCGTCGTCTGTCGTGCATCAGCGCCGTCAACGAGCCATCTCCATTCGTCGTTGGAGCTTCATCTAGCTGCGTTAGAGATCGCCGCGTGCAGTCTTCAGCCACGTCCCGCAAGTCGTACCCGAGTCGTACGTGCACTCCGGTCGAGTCACGTCGAGCGATCTTCCAGCCGTGTCTCGTCCCAGCCGTGCGTGCGTGTATGA

Protein sequence

MLNSSVVAIRQRMRDTVIRRIVSISANRSFCVVVCRASAPSTSHLHSSLELHLAALEIAACSLQPRPASRTRVVRALRSSHVERSSSRVSSQPCVRV
Homology
[Close]
BLAST of IVF0002394 vs. NCBI nr
Match: KAA0033825.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 49.3 bits (116), Expect = 3.90e-04
Identity = 27/49 (55.10%), Postives = 38/49 (77.55%), Query Frame = 0 

Query: 2   LNSSVVAIRQRMRDTVIRRIVSISANRSFCVVVCRASAPSTSHLHSSLE 50
           L+S+VV+IRQ  ++T+   I SI+ANRS CVV+ RA APSTSH  S+++
Sbjct: 248 LDSTVVSIRQSSQNTIACHIFSITANRSRCVVIRRAVAPSTSHHRSTID 296

The following BLAST results are available for this feature:
BLAST of IVF0002394 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0002394 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0002394 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0033825.13.90e-0455.10pol protein [Cucumis melo var. makuwa][more]
BLAST of IVF0002394 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0002394.1IVF0002394.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006259 DNA metabolic process
molecular_function GO:0005488 binding
molecular_function GO:0004518 nuclease activity
molecular_function GO:0016779 nucleotidyltransferase activity