Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATATTTCCCCCGACACTCTTGATTGGATAAGAAAATGCTTCAAAGCCCTACTGGAAACATCAAACACCAAGCATTTATTCAACGAAAGAAGGCAAGAGGATTACTGCATGTGGGTACGAAAAACAAAAAACAAGAGCAAATCTGGTTCCACAGCTGAAATTTTCAGAATCGACAACAAAGGTAGAAAATGCAGCGTTCTTGTTCCTGAAGGCATCGATAAATTTGGTTGGAAGTCTTTTGTAGCCATGCTAACCTTTAAGCATCACTCCCATCATAAGCGGCTACGCTCTGAGGTAAGAAAAGAAAATTTCAACAGAAATTATTCATCATCTGATTCAGAAACCTCAAGAAAATCATATAGCCCTCATGGAAAGTAGTGACGATGGTAGTGATAAGAAGAACAATGTATACTATGATGATAGTTCATGCAAGCGAAGCTCAACAGCTGCTCATAGTGTGAAAGACCCCCTTCGGAAAGCTTTTGAATATGGTGAAACAGTCATTATTACAAGAAGACTCTTTCATGATGATTGGAGCCGTATAATGTTTACCTTGAAGAAACAAACTGAAATAGAGTTCTCCTATGAATCCTTCCATGCAAACAAGGCCATCCTCACACTCTCTGAGGATAATGCAAACTTGCTCTTTAAAATAAGAGTACAAATGGATGGACAACAGTGGGAAACTACCAAGTCAAATTTGAGCGATGGGACACCAAAAAACATGCTTGCCAAACTCTTATTCCAAGCTACGGAGGTTGGATGCGTTTCAAAGGAGTCCCCCTCCATCTATGGAATTATGATTCATTTGTTAACATTGGAAAAGCTTGCGGAGGCTTTCTGGCTGTGGCAAAGGAAACAATGGAAAAGGAGAACCTCATCGAAGCAAAAATTAAAGTAAAGTACAACTACACTGGTTTTGTACCAGCTTCAATTCTGCTCATTGATGACCAAGGGGAAAACTTTGTGGTATATACGGTTCCCCCTCCAAAGGGGAGATGGTTCATAGAAAGAAATGTCAACTTCCATGGGACATTCAAGATTGAAGCAGCTGATGATTTCGACAATCTGAACCCCAACGCAGAGAAGTTCACATTTGCCGGAAACCATGCCATTCCACCGAAAAATTCAAAAAACCAATCTGACAGTTAACAATCAAAGCCTGACAAAACCTCTGACTCAAATCCCACTCATGCCAAGAAAAATAGCTCATCCGAATCTGAGTATGATCCCTTTGATCAAAACTCTGATGATCGAAGGAAGGAGAAAGGAAAAGCCATCTTGTCAACTTATGATCAAGATATCTGCAATTACTCAACCAAATTAAAAAGATCAGCAAAGAGAAAAGTATCATTTAAATCACCTGGTGGTTATTCATCCCACAGTTCATATTTTCGAAAGAGACAAAATCTCAGCATTAATGAAAGGATAGAACAATTTGCGGCTAATAAAGCAGCTTCATCATCTAAAAGAGTCAGCCCGTACAAATATTACCAAAAGAAATACTACCGAATAAAAAGGAAAGCTGGCCCTGGCAGTGAAGATCAGAATCTCTCCTTTGACAAAAAGGAGCTCAGTTTGACAGTTGAGCTGGGACATCTTCCTCCATTACGAGATCTGGATGCAACTGAAGACGTTTTAGCCCAAGTTGAAAATGCTCATACAAAGCAAATCAACAGAAAATTCAGCCCATGA
mRNA sequence
ATGGATATTTCCCCCGACACTCTTGATTGGATAAGAAAATGCTTCAAAGCCCTACTGGAAACATCAAACACCAAGCATTTATTCAACGAAAGAAGGCAAGAGGATTACTGCATGTGGGTACGAAAAACAAAAAACAAGAGCAAATCTGGTTCCACAGCTGAAATTTTCAGAATCGACAACAAAGGTAGAAAATGCAGCGTTCTTGTTCCTGAAGGCATCGATAAATTTGAAAATCATATAGCCCTCATGGAAAGTAGTGACGATGGTAGTGATAAGAAGAACAATGTATACTATGATGATAGTTCATGCAAGCGAAGCTCAACAGCTGCTCATAGTGTGAAAGACCCCCTTCGGAAAGCTTTTGAATATGCTTCAATTCTGCTCATTGATGACCAAGGGGAAAACTTTGTGGTATATACGGTTCCCCCTCCAAAGGGGAGATGGTTCATAGAAAGAAATGTCAACTTCCATGGGACATTCAAGATTGAAGCAGCTGATGATTTCGACAATCTGAACCCCAACGCAGAGAACTCATCCGAATCTGAGTATGATCCCTTTGATCAAAACTCTGATGATCGAAGGAAGGAGAAAGGAAAAGCCATCTTGTCAACTTATGATCAAGATATCTGCAATTACTCAACCAAATTAAAAAGATCAGCAAAGAGAAAAGTATCATTTAAATCACCTGGTGGTTATTCATCCCACAGTTCATATTTTCGAAAGAGACAAAATCTCAGCATTAATGAAAGGATAGAACAATTTGCGGCTAATAAAGCAGCTTCATCATCTAAAAGAGTCAGCCCGTACAAATATTACCAAAAGAAATACTACCGAATAAAAAGGAAAGCTGGCCCTGGCAGTGAAGATCAGAATCTCTCCTTTGACAAAAAGGAGCTCAGTTTGACAGTTGAGCTGGGACATCTTCCTCCATTACGAGATCTGGATGCAACTGAAGACGTTTTAGCCCAAGTTGAAAATGCTCATACAAAGCAAATCAACAGAAAATTCAGCCCATGA
Coding sequence (CDS)
ATGGATATTTCCCCCGACACTCTTGATTGGATAAGAAAATGCTTCAAAGCCCTACTGGAAACATCAAACACCAAGCATTTATTCAACGAAAGAAGGCAAGAGGATTACTGCATGTGGGTACGAAAAACAAAAAACAAGAGCAAATCTGGTTCCACAGCTGAAATTTTCAGAATCGACAACAAAGGTAGAAAATGCAGCGTTCTTGTTCCTGAAGGCATCGATAAATTTGAAAATCATATAGCCCTCATGGAAAGTAGTGACGATGGTAGTGATAAGAAGAACAATGTATACTATGATGATAGTTCATGCAAGCGAAGCTCAACAGCTGCTCATAGTGTGAAAGACCCCCTTCGGAAAGCTTTTGAATATGCTTCAATTCTGCTCATTGATGACCAAGGGGAAAACTTTGTGGTATATACGGTTCCCCCTCCAAAGGGGAGATGGTTCATAGAAAGAAATGTCAACTTCCATGGGACATTCAAGATTGAAGCAGCTGATGATTTCGACAATCTGAACCCCAACGCAGAGAACTCATCCGAATCTGAGTATGATCCCTTTGATCAAAACTCTGATGATCGAAGGAAGGAGAAAGGAAAAGCCATCTTGTCAACTTATGATCAAGATATCTGCAATTACTCAACCAAATTAAAAAGATCAGCAAAGAGAAAAGTATCATTTAAATCACCTGGTGGTTATTCATCCCACAGTTCATATTTTCGAAAGAGACAAAATCTCAGCATTAATGAAAGGATAGAACAATTTGCGGCTAATAAAGCAGCTTCATCATCTAAAAGAGTCAGCCCGTACAAATATTACCAAAAGAAATACTACCGAATAAAAAGGAAAGCTGGCCCTGGCAGTGAAGATCAGAATCTCTCCTTTGACAAAAAGGAGCTCAGTTTGACAGTTGAGCTGGGACATCTTCCTCCATTACGAGATCTGGATGCAACTGAAGACGTTTTAGCCCAAGTTGAAAATGCTCATACAAAGCAAATCAACAGAAAATTCAGCCCATGA
Protein sequence
MDISPDTLDWIRKCFKALLETSNTKHLFNERRQEDYCMWVRKTKNKSKSGSTAEIFRIDNKGRKCSVLVPEGIDKFENHIALMESSDDGSDKKNNVYYDDSSCKRSSTAAHSVKDPLRKAFEYASILLIDDQGENFVVYTVPPPKGRWFIERNVNFHGTFKIEAADDFDNLNPNAENSSESEYDPFDQNSDDRRKEKGKAILSTYDQDICNYSTKLKRSAKRKVSFKSPGGYSSHSSYFRKRQNLSINERIEQFAANKAASSSKRVSPYKYYQKKYYRIKRKAGPGSEDQNLSFDKKELSLTVELGHLPPLRDLDATEDVLAQVENAHTKQINRKFSP
Homology
BLAST of IVF0002340 vs. ExPASy TrEMBL
Match:
A0A5A7U199 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G00620 PE=4 SV=1)
HSP 1 Score: 520.8 bits (1340), Expect = 4.3e-144
Identity = 308/518 (59.46%), Postives = 318/518 (61.39%), Query Frame = 0
Query: 1 MDISPDTLDWIRKCFKALLETSNTKHLFNERRQEDYCMWVRKTKNKSKSGSTAEIFRIDN 60
MDISPD LDWIRKCFKALLETSNTKHLFNERRQEDYCMWVRKTKNKSKSGST EIFRIDN
Sbjct: 1 MDISPDILDWIRKCFKALLETSNTKHLFNERRQEDYCMWVRKTKNKSKSGSTTEIFRIDN 60
Query: 61 KGRKCSVLVPEGIDK-----------FENHI----------------------------- 120
KGRKCSVLVPEGIDK F++H
Sbjct: 61 KGRKCSVLVPEGIDKFGWKSFVAMLTFKHHSHHKRLRSEVRKENFNRNYSSSDSETSRKS 120
Query: 121 ---ALMESSDDGSDKKNNVYYDDSSCKRSSTAAHSVKDPLRKAFEYASILLI------DD 180
ALMESSDDGSDKKNNVYYDDSSCKRSSTAAHSVKDPLRKA EY ++I DD
Sbjct: 121 YARALMESSDDGSDKKNNVYYDDSSCKRSSTAAHSVKDPLRKALEYGETVIITRRLFHDD 180
Query: 181 ------------------------------------------------------------ 240
Sbjct: 181 WSRIMFTLKKQTEIEFSYESFHANKAILTLSEDNANLLFQIRVQMDGQQWETPNYGGWMR 240
Query: 241 --------------------------------QGENFVVYTVPPPKGRWFIERNVNFHGT 300
+ EN + + KGRWFIERNVNFHGT
Sbjct: 241 FKGVPLHLWNYDSFVNIGKACGGFLAVAKETMEKENLIEAKI---KGRWFIERNVNFHGT 300
Query: 301 FKIEAADDFDNLNPNAE----------------------------------------NSS 338
FKIEAADDFDNLNPNAE +SS
Sbjct: 301 FKIEAADDFDNLNPNAEEFTFAENHAIPPENSKNQSDSKQSKPDKTSDSNPTYAKKNSSS 360
BLAST of IVF0002340 vs. ExPASy TrEMBL
Match:
A0A5D3CPN2 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold488G00870 PE=4 SV=1)
HSP 1 Score: 241.9 bits (616), Expect = 3.9e-60
Identity = 137/242 (56.61%), Postives = 148/242 (61.16%), Query Frame = 0
Query: 1 MDISPDTLDWIRKCFKALLETSNTKHLFNERRQEDYCMWVRKTKNKSKSGSTAEIFRIDN 60
MDISP+TLDWIRKCFKALLETSNTKHLFNERRQEDYCMWVRKTKNKSKSGSTAEIFRIDN
Sbjct: 1 MDISPETLDWIRKCFKALLETSNTKHLFNERRQEDYCMWVRKTKNKSKSGSTAEIFRIDN 60
Query: 61 KGRKCSVLVPEGIDKF--------------ENHIALMESSDDGSDKKNNVY--------- 120
KGRKCSVLVPEGIDKF +H L S +G N
Sbjct: 61 KGRKCSVLVPEGIDKFGWKSFVAMLTFKHHSHHKRLRSESTNGWTTVGNYQVKFERWDTK 120
Query: 121 --------------------------YDD------------SSCKRSSTAAHSVKDPLRK 177
YD + K + + ++ ++
Sbjct: 121 KHACQTLIPSYGGWMRFKGVPLHLWNYDSFVNIGKACGGFLAVAKETMEKENLIEAKIKV 180
BLAST of IVF0002340 vs. ExPASy TrEMBL
Match:
A0A5D3DFM9 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold173G00270 PE=4 SV=1)
HSP 1 Score: 213.8 bits (543), Expect = 1.1e-51
Identity = 184/539 (34.14%), Postives = 227/539 (42.12%), Query Frame = 0
Query: 1 MDISPDTLDWIRKCFKALLETSNTKHLFNERRQEDYCMWVRKTKNKSKSGSTAEIFRIDN 60
MDI+PDTL+WIR CFK LL+TS TKH F E+R ED CMWVRKTKNKSK+ T EIFRIDN
Sbjct: 1 MDITPDTLEWIRNCFKDLLDTSTTKHFFAEKRSEDNCMWVRKTKNKSKTSITVEIFRIDN 60
Query: 61 KGRKCSVLVPEGIDKF--ENHIALME--------------------------SSD----- 120
KGRKCS+LVPEG D F ++ +AL+ SSD
Sbjct: 61 KGRKCSILVPEGPDSFGWKSFLALITFRPSAPTKRICSEIRKEFVSKYSDSFSSDSDSSR 120
Query: 121 --------DGSDKKNNVYY----DDSSCKRSSTAA------------------------- 180
D S+++N Y DDSS +RSST
Sbjct: 121 KSYAKALSDSSEEENKKRYKSTSDDSSSRRSSTIGFKPFTLSGDSFEKTVIVTRRCFHDD 180
Query: 181 -HSVKDPLRK----AFEY------------------------------------------ 240
+ + LRK AF Y
Sbjct: 181 WNRIMFSLRKQSEIAFSYKPFQADKAFLFLNPDHAKLLCSNKSANGWSTVGNYQRDSASF 240
Query: 241 ---------------------------------------------ASILLIDDQGENFVV 300
AS+L+ D+QGENF++
Sbjct: 241 VELQYFSKHWFGLWRIPCVVKETMQMEKLIDAKIKVRYNYIGFVPASVLITDNQGENFIL 300
Query: 301 YTVPPPKGRWFIERNVNFHGTFKIEAADDFDNLNPNAE---------------------- 329
TVPP K RW +ERNV HGTFK +AAD+FD NP AE
Sbjct: 301 TTVPPTKARWLVERNVRVHGTFKTKAADEFDQHNPLAEAYTYNGFQAIPLESTRTRGDYS 360
BLAST of IVF0002340 vs. ExPASy TrEMBL
Match:
A0A5D3BYJ0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold24967G00330 PE=4 SV=1)
HSP 1 Score: 213.8 bits (543), Expect = 1.1e-51
Identity = 168/481 (34.93%), Postives = 219/481 (45.53%), Query Frame = 0
Query: 1 MDISPDTLDWIRKCFKALLETSNTKHLFNERRQEDYCMWVRKTKNKSKSGSTAEIFRIDN 60
MDI+PD LDWI CFK LL+T+ KH F ERR E+ CMWVRKTKNKSK+ TAEIFR+DN
Sbjct: 14 MDITPDALDWIINCFKDLLDTTTLKHFFTERRLENNCMWVRKTKNKSKTSITAEIFRLDN 73
Query: 61 KGRKCSVLVPEGIDKF--ENHIALME--------------------------SSD----- 120
KGRKCS+LVPEG DKF ++ +AL+ SSD
Sbjct: 74 KGRKCSILVPEGSDKFRWKSFLALITFRPFAPTKRIRSEIRKEYVSKYFDSFSSDSNSSR 133
Query: 121 --------DGSDKKNNVYY----DDSSCKRSSTAAHSVKDPLRKAFEY------------ 180
D S+++N Y DDSS +RS+T S + K+F+
Sbjct: 134 KSYAKALSDSSEEENKKRYKSTSDDSSSRRSTTTRQSEMEFSNKSFQAGKAIHYLNPDHA 193
Query: 181 ----------------------ASILLI--------------------DDQGENFVVYTV 240
AS++ + + GENF++ TV
Sbjct: 194 KLFCSNKSVNGWSTVGNYQRYPASLMELQYFLIHWNGLWRLPCRSKGNNADGENFIITTV 253
Query: 241 PPPKGRWFIERNVNFHGTFKIEAADDFDNLNPNAE------------------------- 300
PPP+ RWF+ERNV HG+FK +AAD+FD NP+ E
Sbjct: 254 PPPEARWFVERNVRVHGSFKSKAADEFDEHNPSVEVYTYNGFQAIPSRTTKSRGDYSYLN 313
Query: 301 ---------------NSSESEYDPFDQNSDDRRKEKGKAILSTYDQDICNYSTKLKRSAK 336
NSSE EYDPFD ++RKEK KAIL DQD +YS + KR +K
Sbjct: 314 SDKHSISNHTQAKKDNSSEFEYDPFDYQLCEKRKEKRKAILIINDQDHGHYSKRSKRMSK 373
BLAST of IVF0002340 vs. ExPASy TrEMBL
Match:
A0A5A7US62 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold280G003960 PE=4 SV=1)
HSP 1 Score: 202.6 bits (514), Expect = 2.6e-48
Identity = 178/557 (31.96%), Postives = 224/557 (40.22%), Query Frame = 0
Query: 1 MDISPDTLDWIRKCFKALLETSNTKHLFNERRQEDYCMWVRKTKNKSKSGSTAEIFRIDN 60
MDI+PDTL WIR CFK LL+TS TKH F ERR ED CMWVRKTKNKSK+ TAEIFRIDN
Sbjct: 14 MDITPDTLAWIRNCFKDLLDTSTTKHFFAERRMEDNCMWVRKTKNKSKTSITAEIFRIDN 73
Query: 61 KGRKCSVLVPEGIDKF--ENHIALM----------------------------------- 120
KGRKCS+LVPEG D F ++ +AL+
Sbjct: 74 KGRKCSILVPEGPDSFGWKSFLALITFRSSAPTKRIRSEIRKEPVSTFSDSFSSDSDSSR 133
Query: 121 --------ESSDDGSDKKNNVYYDDSSCKRSSTAA------------------------- 180
+SS+D + K+ DDSS +RSS+
Sbjct: 134 KSYAKVLSDSSEDDNKKRYKATSDDSSSRRSSSIGFKPFTLSGNSFEKTVIITRRCFHDD 193
Query: 181 -HSVKDPLRK----AFEY------------------------------------------ 240
+ + LRK AF Y
Sbjct: 194 WNRIMFSLRKQSEIAFSYKPFQADKAILFLNPDHAKLLCSNKGANGWSTVGNYQVKFESW 253
Query: 241 ------------------------------------------------------------ 300
Sbjct: 254 DSNLHSFHSVIPSYGGWLRFRGIPLHLWNYNTFQHIGSACGGFLDVAKETMQMDKLIDAK 313
Query: 301 ------------ASILLIDDQGENFVVYTVPPPKGRWFIERNVNFHGTFKIEAADDFDNL 320
ASIL+ D+QGENF+V TV P + RW +ERNV HG+F+ +AAD+FD
Sbjct: 314 IKVRYNYIGFVPASILITDNQGENFIVTTVQPAEARWLVERNVRVHGSFRTKAADEFDQH 373
BLAST of IVF0002340 vs. NCBI nr
Match:
KAA0047997.1 (hypothetical protein E6C27_scaffold385G00620 [Cucumis melo var. makuwa])
HSP 1 Score: 517 bits (1331), Expect = 1.73e-179
Identity = 308/518 (59.46%), Postives = 318/518 (61.39%), Query Frame = 0
Query: 1 MDISPDTLDWIRKCFKALLETSNTKHLFNERRQEDYCMWVRKTKNKSKSGSTAEIFRIDN 60
MDISPD LDWIRKCFKALLETSNTKHLFNERRQEDYCMWVRKTKNKSKSGST EIFRIDN
Sbjct: 1 MDISPDILDWIRKCFKALLETSNTKHLFNERRQEDYCMWVRKTKNKSKSGSTTEIFRIDN 60
Query: 61 KGRKCSVLVPEGIDKF-----------ENHI----------------------------- 120
KGRKCSVLVPEGIDKF ++H
Sbjct: 61 KGRKCSVLVPEGIDKFGWKSFVAMLTFKHHSHHKRLRSEVRKENFNRNYSSSDSETSRKS 120
Query: 121 ---ALMESSDDGSDKKNNVYYDDSSCKRSSTAAHSVKDPLRKAFEYASILLI------DD 180
ALMESSDDGSDKKNNVYYDDSSCKRSSTAAHSVKDPLRKA EY ++I DD
Sbjct: 121 YARALMESSDDGSDKKNNVYYDDSSCKRSSTAAHSVKDPLRKALEYGETVIITRRLFHDD 180
Query: 181 ------------------------------------------------------------ 240
Sbjct: 181 WSRIMFTLKKQTEIEFSYESFHANKAILTLSEDNANLLFQIRVQMDGQQWETPNYGGWMR 240
Query: 241 --------------------------------QGENFVVYTVPPPKGRWFIERNVNFHGT 300
+ EN + + KGRWFIERNVNFHGT
Sbjct: 241 FKGVPLHLWNYDSFVNIGKACGGFLAVAKETMEKENLIEAKI---KGRWFIERNVNFHGT 300
Query: 301 FKIEAADDFDNLNPNAE----------------------------------------NSS 337
FKIEAADDFDNLNPNAE +SS
Sbjct: 301 FKIEAADDFDNLNPNAEEFTFAENHAIPPENSKNQSDSKQSKPDKTSDSNPTYAKKNSSS 360
BLAST of IVF0002340 vs. NCBI nr
Match:
TYK13823.1 (hypothetical protein E5676_scaffold488G00870 [Cucumis melo var. makuwa])
HSP 1 Score: 237 bits (605), Expect = 3.58e-73
Identity = 138/242 (57.02%), Postives = 149/242 (61.57%), Query Frame = 0
Query: 1 MDISPDTLDWIRKCFKALLETSNTKHLFNERRQEDYCMWVRKTKNKSKSGSTAEIFRIDN 60
MDISP+TLDWIRKCFKALLETSNTKHLFNERRQEDYCMWVRKTKNKSKSGSTAEIFRIDN
Sbjct: 1 MDISPETLDWIRKCFKALLETSNTKHLFNERRQEDYCMWVRKTKNKSKSGSTAEIFRIDN 60
Query: 61 KGRKCSVLVPEGIDKF--------------ENHIALMESSDDGSDKKNNVY--------- 120
KGRKCSVLVPEGIDKF +H L S +G N
Sbjct: 61 KGRKCSVLVPEGIDKFGWKSFVAMLTFKHHSHHKRLRSESTNGWTTVGNYQVKFERWDTK 120
Query: 121 --------------------------YDD-----SSC-------KRSSTAAHSVKDPLRK 176
YD +C K + + ++ ++
Sbjct: 121 KHACQTLIPSYGGWMRFKGVPLHLWNYDSFVNIGKACGGFLAVAKETMEKENLIEAKIKV 180
BLAST of IVF0002340 vs. NCBI nr
Match:
TYK04225.1 (hypothetical protein E5676_scaffold24967G00330 [Cucumis melo var. makuwa])
HSP 1 Score: 209 bits (533), Expect = 8.05e-59
Identity = 171/484 (35.33%), Postives = 222/484 (45.87%), Query Frame = 0
Query: 1 MDISPDTLDWIRKCFKALLETSNTKHLFNERRQEDYCMWVRKTKNKSKSGSTAEIFRIDN 60
MDI+PD LDWI CFK LL+T+ KH F ERR E+ CMWVRKTKNKSK+ TAEIFR+DN
Sbjct: 14 MDITPDALDWIINCFKDLLDTTTLKHFFTERRLENNCMWVRKTKNKSKTSITAEIFRLDN 73
Query: 61 KGRKCSVLVPEGIDKF--ENHIALME--------------------------SSD----- 120
KGRKCS+LVPEG DKF ++ +AL+ SSD
Sbjct: 74 KGRKCSILVPEGSDKFRWKSFLALITFRPFAPTKRIRSEIRKEYVSKYFDSFSSDSNSSR 133
Query: 121 --------DGSDKKNNVYY----DDSSCKRSSTAAHSVKDPLRKAFEY------------ 180
D S+++N Y DDSS +RS+T S + K+F+
Sbjct: 134 KSYAKALSDSSEEENKKRYKSTSDDSSSRRSTTTRQSEMEFSNKSFQAGKAIHYLNPDHA 193
Query: 181 ----------------------ASILLI--------------------DDQGENFVVYTV 240
AS++ + + GENF++ TV
Sbjct: 194 KLFCSNKSVNGWSTVGNYQRYPASLMELQYFLIHWNGLWRLPCRSKGNNADGENFIITTV 253
Query: 241 PPPKGRWFIERNVNFHGTFKIEAADDFDNLNPNAE------------------------- 300
PPP+ RWF+ERNV HG+FK +AAD+FD NP+ E
Sbjct: 254 PPPEARWFVERNVRVHGSFKSKAADEFDEHNPSVEVYTYNGFQAIPSRTTKSRGDYSYLN 313
Query: 301 ---------------NSSESEYDPFDQNSDDRRKEKGKAILSTYDQDICNYSTKLKRSAK 335
NSSE EYDPFD ++RKEK KAIL DQD +YS + KR +K
Sbjct: 314 SDKHSISNHTQAKKDNSSEFEYDPFDYQLCEKRKEKRKAILIINDQDHGHYSKRSKRMSK 373
BLAST of IVF0002340 vs. NCBI nr
Match:
KAA0035247.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK22402.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 209 bits (532), Expect = 1.54e-56
Identity = 184/539 (34.14%), Postives = 227/539 (42.12%), Query Frame = 0
Query: 1 MDISPDTLDWIRKCFKALLETSNTKHLFNERRQEDYCMWVRKTKNKSKSGSTAEIFRIDN 60
MDI+PDTL+WIR CFK LL+TS TKH F E+R ED CMWVRKTKNKSK+ T EIFRIDN
Sbjct: 1 MDITPDTLEWIRNCFKDLLDTSTTKHFFAEKRSEDNCMWVRKTKNKSKTSITVEIFRIDN 60
Query: 61 KGRKCSVLVPEGIDKF--ENHIALME--------------------------SSD----- 120
KGRKCS+LVPEG D F ++ +AL+ SSD
Sbjct: 61 KGRKCSILVPEGPDSFGWKSFLALITFRPSAPTKRICSEIRKEFVSKYSDSFSSDSDSSR 120
Query: 121 --------DGSDKKNNVYY----DDSSCKRSSTAA------------------------- 180
D S+++N Y DDSS +RSST
Sbjct: 121 KSYAKALSDSSEEENKKRYKSTSDDSSSRRSSTIGFKPFTLSGDSFEKTVIVTRRCFHDD 180
Query: 181 -HSVKDPLRK----AFEY------------------------------------------ 240
+ + LRK AF Y
Sbjct: 181 WNRIMFSLRKQSEIAFSYKPFQADKAFLFLNPDHAKLLCSNKSANGWSTVGNYQRDSASF 240
Query: 241 ---------------------------------------------ASILLIDDQGENFVV 300
AS+L+ D+QGENF++
Sbjct: 241 VELQYFSKHWFGLWRIPCVVKETMQMEKLIDAKIKVRYNYIGFVPASVLITDNQGENFIL 300
Query: 301 YTVPPPKGRWFIERNVNFHGTFKIEAADDFDNLNPNAE---------------------- 328
TVPP K RW +ERNV HGTFK +AAD+FD NP AE
Sbjct: 301 TTVPPTKARWLVERNVRVHGTFKTKAADEFDQHNPLAEAYTYNGFQAIPLESTRTRGDYS 360
BLAST of IVF0002340 vs. NCBI nr
Match:
TYK08190.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 198 bits (504), Expect = 1.10e-52
Identity = 178/557 (31.96%), Postives = 224/557 (40.22%), Query Frame = 0
Query: 1 MDISPDTLDWIRKCFKALLETSNTKHLFNERRQEDYCMWVRKTKNKSKSGSTAEIFRIDN 60
MDI+PDTL WIR CFK LL+TS TKH F ERR ED CMWVRKTKNKSK+ TAEIFRIDN
Sbjct: 14 MDITPDTLAWIRNCFKDLLDTSTTKHFFAERRMEDNCMWVRKTKNKSKTSITAEIFRIDN 73
Query: 61 KGRKCSVLVPEGIDKF--ENHIALM----------------------------------- 120
KGRKCS+LVPEG D F ++ +AL+
Sbjct: 74 KGRKCSILVPEGPDSFGWKSFLALITFRSSAPTKRIRSEIRKEPVSTFSDSFSSDSDSSR 133
Query: 121 --------ESSDDGSDKKNNVYYDDSSCKRSSTAA------------------------- 180
+SS+D + K+ DDSS +RSS+
Sbjct: 134 KSYAKVLSDSSEDDNKKRYKATSDDSSSRRSSSIGFKPFTLSGNSFEKTVIITRRCFHDD 193
Query: 181 -HSVKDPLRK----AFEY------------------------------------------ 240
+ + LRK AF Y
Sbjct: 194 WNRIMFSLRKQSEIAFSYKPFQADKAILFLNPDHAKLLCSNKGANGWSTVGNYQVKFESW 253
Query: 241 ------------------------------------------------------------ 300
Sbjct: 254 DSNLHSFHSVIPSYGGWLRFRGIPLHLWNYNTFQHIGSACGGFLDVAKETMQMDKLIDAK 313
Query: 301 ------------ASILLIDDQGENFVVYTVPPPKGRWFIERNVNFHGTFKIEAADDFDNL 319
ASIL+ D+QGENF+V TV P + RW +ERNV HG+F+ +AAD+FD
Sbjct: 314 IKVRYNYIGFVPASILITDNQGENFIVTTVQPAEARWLVERNVRVHGSFRTKAADEFDQH 373
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7U199 | 4.3e-144 | 59.46 | DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... | [more] |
| A0A5D3CPN2 | 3.9e-60 | 56.61 | DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
| A0A5D3DFM9 | 1.1e-51 | 34.14 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
| A0A5D3BYJ0 | 1.1e-51 | 34.93 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A5A7US62 | 2.6e-48 | 31.96 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KAA0047997.1 | 1.73e-179 | 59.46 | hypothetical protein E6C27_scaffold385G00620 [Cucumis melo var. makuwa] | [more] |
| TYK13823.1 | 3.58e-73 | 57.02 | hypothetical protein E5676_scaffold488G00870 [Cucumis melo var. makuwa] | [more] |
| TYK04225.1 | 8.05e-59 | 35.33 | hypothetical protein E5676_scaffold24967G00330 [Cucumis melo var. makuwa] | [more] |
| KAA0035247.1 | 1.54e-56 | 34.14 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK224... | [more] |
| TYK08190.1 | 1.10e-52 | 31.96 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
