IVF0002177 (gene) Melon (IVF77) v1

Overview
NameIVF0002177
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Locationchr09: 16712938 .. 16713181 (+)
RNA-Seq ExpressionIVF0002177
SyntenyIVF0002177
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGCCTGATGATTTGATGGGAACAAGAACCGCTAGGGTCAGTGAACGTAGGAATGTTTTAAGCGGGTCTAAGCGGAAACGTCCAGGACATGCCACAGATAGTGGGGACATAGTTCGTACTGCCATTGAGTACGGAAATGAACAAGTGAATCGCATTGCTGAGTGGCCTGTCCTACAACGTCAAGACGCAAGCCAAACACGTCAAGAGATTGTTCGACAGTTGGAGGCCATCCCTGAGCTGA

mRNA sequence

ATGTCGCCTGATGATTTGATGGGAACAAGAACCGCTAGGGTCAGTGAACGTAGGAATGTTTTAAGCGGGTCTAAGCGGAAACGTCCAGGACATGCCACAGATAGTGGGGACATAGTTCGTACTGCCATTGATGGCCTGTCCTACAACGTCAAGACGCAAGCCAAACACGTCAAGAGATTGTTCGACAGTTGGAGGCCATCCCTGAGCTGA

Coding sequence (CDS)

ATGTCGCCTGATGATTTGATGGGAACAAGAACCGCTAGGGTCAGTGAACGTAGGAATGTTTTAAGCGGGTCTAAGCGGAAACGTCCAGGACATGCCACAGATAGTGGGGACATAGTTCGTACTGCCATTGATGGCCTGTCCTACAACGTCAAGACGCAAGCCAAACACGTCAAGAGATTGTTCGACAGTTGGAGGCCATCCCTGAGCTGA

Protein sequence

MSPDDLMGTRTARVSERRNVLSGSKRKRPGHATDSGDIVRTAIDGLSYNVKTQAKHVKRLFDSWRPSLS
Homology
[Close]
BLAST of IVF0002177 vs. ExPASy TrEMBL
Match: A0A5D3E392 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold344G00110 PE=3 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.1e-17
Identity = 51/69 (73.91%), Postives = 57/69 (82.61%), Query Frame = 0 

Query: 1   MSPDDLMGTRTARVSERRNVLSGSKRKRPGHATDSGDIVRTAIDGLSYNVKTQAKHVKRL 60
           MSP++LMGTRT RVSE R VLSGSK+KR G   DSGD++RTAI+     VKTQAKHVKRL
Sbjct: 229 MSPNELMGTRTDRVSEGRYVLSGSKQKRGGQVVDSGDVIRTAIE----YVKTQAKHVKRL 288

Query: 61  FDSWRPSLS 70
           FDSWRPSLS
Sbjct: 289 FDSWRPSLS 293

[Close]
BLAST of IVF0002177 vs. ExPASy TrEMBL
Match: A0A5A7VFI4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold62G00470 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.1e-17
Identity = 51/69 (73.91%), Postives = 57/69 (82.61%), Query Frame = 0 

Query: 1   MSPDDLMGTRTARVSERRNVLSGSKRKRPGHATDSGDIVRTAIDGLSYNVKTQAKHVKRL 60
           MSP++LMGTRT RVSE R VLSGSK+KR G   DSGD++RTAI+     VKTQAKHVKRL
Sbjct: 123 MSPNELMGTRTDRVSEGRYVLSGSKQKRGGQVVDSGDVIRTAIE----YVKTQAKHVKRL 182

Query: 61  FDSWRPSLS 70
           FDSWRPSLS
Sbjct: 183 FDSWRPSLS 187

[Close]
BLAST of IVF0002177 vs. ExPASy TrEMBL
Match: A0A5A7U7R0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G00810 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.9e-14
Identity = 43/44 (97.73%), Postives = 44/44 (100.00%), Query Frame = 0 

Query: 1   MSPDDLMGTRTARVSERRNVLSGSKRKRPGHATDSGDIVRTAID 45
           MSPDDLMGTRTARVSERRNVLSGSKRKRPGHATDSGDIVRTAI+
Sbjct: 88  MSPDDLMGTRTARVSERRNVLSGSKRKRPGHATDSGDIVRTAIE 131

[Close]
BLAST of IVF0002177 vs. ExPASy TrEMBL
Match: A0A5A7TXK4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G00820 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 3.6e-13
Identity = 41/44 (93.18%), Postives = 43/44 (97.73%), Query Frame = 0 

Query: 1   MSPDDLMGTRTARVSERRNVLSGSKRKRPGHATDSGDIVRTAID 45
           MSPDDLM TRTA+VSERRNVLSGSKRKRPGHATDSGDIVRTAI+
Sbjct: 176 MSPDDLMETRTAKVSERRNVLSGSKRKRPGHATDSGDIVRTAIE 219

[Close]
BLAST of IVF0002177 vs. ExPASy TrEMBL
Match: A0A5A7UME4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold615G00290 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 8.0e-13
Identity = 41/44 (93.18%), Postives = 42/44 (95.45%), Query Frame = 0 

Query: 1   MSPDDLMGTRTARVSERRNVLSGSKRKRPGHATDSGDIVRTAID 45
           MSPDDLM TRTARVSERRNV SGSKRKRPGHATDSGDIVRTAI+
Sbjct: 180 MSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIE 223

[Close]
BLAST of IVF0002177 vs. NCBI nr
Match: KAA0065970.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 97.8 bits (242), Expect = 1.48e-23
Identity = 51/69 (73.91%), Postives = 57/69 (82.61%), Query Frame = 0 

Query: 1   MSPDDLMGTRTARVSERRNVLSGSKRKRPGHATDSGDIVRTAIDGLSYNVKTQAKHVKRL 60
           MSP++LMGTRT RVSE R VLSGSK+KR G   DSGD++RTAI+     VKTQAKHVKRL
Sbjct: 123 MSPNELMGTRTDRVSEGRYVLSGSKQKRGGQVVDSGDVIRTAIE----YVKTQAKHVKRL 182

Query: 61  FDSWRPSLS 69
           FDSWRPSLS
Sbjct: 183 FDSWRPSLS 187

[Close]
BLAST of IVF0002177 vs. NCBI nr
Match: TYK30259.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 97.8 bits (242), Expect = 1.29e-22
Identity = 51/69 (73.91%), Postives = 57/69 (82.61%), Query Frame = 0 

Query: 1   MSPDDLMGTRTARVSERRNVLSGSKRKRPGHATDSGDIVRTAIDGLSYNVKTQAKHVKRL 60
           MSP++LMGTRT RVSE R VLSGSK+KR G   DSGD++RTAI+     VKTQAKHVKRL
Sbjct: 229 MSPNELMGTRTDRVSEGRYVLSGSKQKRGGQVVDSGDVIRTAIE----YVKTQAKHVKRL 288

Query: 61  FDSWRPSLS 69
           FDSWRPSLS
Sbjct: 289 FDSWRPSLS 293

[Close]
BLAST of IVF0002177 vs. NCBI nr
Match: KAA0050216.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ98192.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 87.8 bits (216), Expect = 1.92e-19
Identity = 43/44 (97.73%), Postives = 44/44 (100.00%), Query Frame = 0 

Query: 1   MSPDDLMGTRTARVSERRNVLSGSKRKRPGHATDSGDIVRTAID 44
           MSPDDLMGTRTARVSERRNVLSGSKRKRPGHATDSGDIVRTAI+
Sbjct: 88  MSPDDLMGTRTARVSERRNVLSGSKRKRPGHATDSGDIVRTAIE 131

[Close]
BLAST of IVF0002177 vs. NCBI nr
Match: KAA0051580.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 82.4 bits (202), Expect = 3.25e-18
Identity = 41/44 (93.18%), Postives = 42/44 (95.45%), Query Frame = 0 

Query: 1  MSPDDLMGTRTARVSERRNVLSGSKRKRPGHATDSGDIVRTAID 44
          MSPDDLM TRTARVSERRNV SGSKRKRPGHATDSGDIVRTAI+
Sbjct: 1  MSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIE 44

[Close]
BLAST of IVF0002177 vs. NCBI nr
Match: KAA0063125.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 82.4 bits (202), Expect = 3.25e-18
Identity = 41/44 (93.18%), Postives = 42/44 (95.45%), Query Frame = 0 

Query: 1  MSPDDLMGTRTARVSERRNVLSGSKRKRPGHATDSGDIVRTAID 44
          MSPDDLM TRTARVSERRNV SGSKRKRPGHATDSGDIVRTAI+
Sbjct: 1  MSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIE 44

The following BLAST results are available for this feature:
BLAST of IVF0002177 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0002177 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3E3921.1e-1773.91Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7VFI41.1e-1773.91Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7U7R01.9e-1497.73Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TXK43.6e-1393.18Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7UME48.0e-1393.18Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of IVF0002177 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0065970.11.48e-2373.91retrotransposon protein [Cucumis melo var. makuwa][more]
TYK30259.11.29e-2273.91retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0050216.11.92e-1997.73retrotransposon protein [Cucumis melo var. makuwa] >TYJ98192.1 retrotransposon p... [more]
KAA0051580.13.25e-1893.18retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0063125.13.25e-1893.18retrotransposon protein [Cucumis melo var. makuwa][more]
BLAST of IVF0002177 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..36
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 19..34

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0002177.1IVF0002177.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding