IVF0001988 (gene) Melon (IVF77) v1

Overview


Name	IVF0001988
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr03: 1428271 .. 1428441 (+)
RNA-Seq Expression	IVF0001988
Synteny	IVF0001988

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGGGCCGCGGCGGACGAAAGCTGGAGTGGTGAGATTGTCGACGACGGAGACGGAAATGGTACCACCACAGAGAGAGGGAGACGGAGAGAAGCGATGGCGACCGGCGGGTGCGGAAGAGAGAAGGCTGGGGGACGGCGGCGGCGGCCTCGCGTGTGGAAGACGTTGA

mRNA sequence

ATGGATGGGCCGCGGCGGACGAAAGCTGGAGTGGTGAGATTGTCGACGACGGAGACGGAAATGGTACCACCACAGAGAGAGGGAGACGGAGAGAAGCGATGGCGACCGGCGGGTGCGGAAGAGAGAAGGCTGGGGGACGGCGGCGGCGGCCTCGCGTGTGGAAGACGTTGA

Coding sequence (CDS)

ATGGATGGGCCGCGGCGGACGAAAGCTGGAGTGGTGAGATTGTCGACGACGGAGACGGAAATGGTACCACCACAGAGAGAGGGAGACGGAGAGAAGCGATGGCGACCGGCGGGTGCGGAAGAGAGAAGGCTGGGGGACGGCGGCGGCGGCCTCGCGTGTGGAAGACGTTGA

Protein sequence

MDGPRRTKAGVVRLSTTETEMVPPQREGDGEKRWRPAGAEERRLGDGGGGLACGRR

Homology

[Close]

BLAST of IVF0001988 vs. ExPASy TrEMBL
Match: A0A5A7V558 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold508G00220 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 3.0e-18
Identity = 51/56 (91.07%), Postives = 51/56 (91.07%), Query Frame = 0


Query: 1   MDGPRRTKAGVVRLSTTETEMVPPQREGDGEKRWRPAGAEERRLGDGGGGLACGRR 57
           MDGPRRTKAGVVRL TTETE VPPQREGDGEK  RPAGAEERRLGDGG GLACGRR
Sbjct: 210 MDGPRRTKAGVVRLPTTETETVPPQREGDGEKGLRPAGAEERRLGDGGDGLACGRR 265

[Close]

BLAST of IVF0001988 vs. NCBI nr
Match: KAA0063392.1 (hypothetical protein E6C27_scaffold508G00220 [Cucumis melo var. makuwa])

HSP 1 Score: 99.8 bits (247), Expect = 8.31e-24
Identity = 51/56 (91.07%), Postives = 51/56 (91.07%), Query Frame = 0


Query: 1   MDGPRRTKAGVVRLSTTETEMVPPQREGDGEKRWRPAGAEERRLGDGGGGLACGRR 56
           MDGPRRTKAGVVRL TTETE VPPQREGDGEK  RPAGAEERRLGDGG GLACGRR
Sbjct: 210 MDGPRRTKAGVVRLPTTETETVPPQREGDGEKGLRPAGAEERRLGDGGDGLACGRR 265

The following BLAST results are available for this feature:

BLAST of IVF0001988 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0001988 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V558	3.0e-18	91.07	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of IVF0001988 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0063392.1	8.31e-24	91.07	hypothetical protein E6C27_scaffold508G00220 [Cucumis melo var. makuwa]	[more]

BLAST of IVF0001988 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..56
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..42

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0001988.1	IVF0001988.1	mRNA