IVF0001943 (gene) Melon (IVF77) v1

Overview


Name	IVF0001943
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	C2H2-type domain-containing protein
Location	chr01: 21653414 .. 21656072 (-)
RNA-Seq Expression	IVF0001943
Synteny	IVF0001943

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTAGTAGGATTACGTCTTCTGTTTCCTGGTCTCCCTTTTCGCTTGTACCCACTAAACCAAAAATTACCCATTATTCATCTCCATCTCTCCTTCCATTTCGCTCCTCTTCAACTCCTTCAAATCTCCAATTTCGTGGAATTTCACATTTTCAACCAAATGGTCTTCCAGATTATTAGCTCGTTGCAGCTCTGGTACCTTTATTCTTTGCCTCCTTTGTTTTGTTTTCCAATCTGTTGTTAGTTATTGAGGTATTTCACGATGGTGTTTGTGGTAAATCTGTTGTTAAATCTGTTATTAATTCTGATATGTGAGTGAATCTCTACGTATTTGTTGGTCTTTTATTTGGATTTCATAAAACAATAATGGTTTTACTTCTCGTTTGAAGTTATCTGATTCTATGACTACAAACTGTTTGATCTATTGTCAATGGTTTTATTGAGTGTGAAATTGGCCTAATTTTGTTATGATTAGTTTTCATCAAATCAATGCATTAAGAGCTGATTAGTTTCTTAGGCTAGGATTTCATTTTCCTTGAACTTAAATCTGAAATTTGACCAAATTATGAAACTTGCTTTTCTAATGACGTGGAGGAGGAAAAATGATACTCTTTGTTTTATGGTGAAAACTTGGAGGTTAGATGAATAATTGGGATGGATTGAGGAAGAATCTGCTGAAGGACCAAATAGATCTTAAATTTGACTTCTTGTATTTAGTCTTTTAACCATAGTTTGTCTCTGATTTCAATGGGAGCTTGCTCAATAAGAGTTCATTCAATGAAAATACACATGTGCCCTTTCCATGGAATTATCCATTCTCTGTATTTGCCTTATGCAAATTGCTGTTATAATAAAGGAGGAAAGATAGACAACTTTAAGAAGATGATATTGATTTCTTAGGAGAAGAAAATCCAACAGAAACTGTGGAAAAAGCGCTTTTTGTATCTGTTATCTAGATCTTCTAGTTCTGTTTCTTTTATCAAGAATCTAATGATCTAGCTGTATCATGCAGGTGATGGTGACAGCAGGACCATTCTAGATGCATTTTTTTTGGGAAAAGCTTTGGCAGAAGCCTTAACTGAGCGAATCGAGTCAACAATTGGAGAGGTTTTGAGTGGGATTGGTAAGCTGCAAGCTGAACAACAAAAACAAATTACTGATTTCCAGGTAGGGTGGACCAAAGTTATTGATAGGCTTAGATGACTGATATAAGGGATTCTGCTTCTCGTTTCCTTCCCGTTTGTGTGGTTGATAGCTAATCATCATCATTGTTAATATTGTATTTCATCCAATTGGACGATAACAATCTCATGTTCCTTCACTTCCACCTATGAAAGATCCTTTGCTTCTTTTCCTATTAGCCAGTGTTATCCCTGCTGCAGTGCCAGTTTATTTTCATTTTCTTTTGAAACATGATGGCATAAATTTGCGTAGAACTTCCTATTGTTGTTTTAAGTTACCACATTGAGACCTCTTGAATTATAGGTTATATATAACCAATGAACAAAAAAAGATGGTTTGGCTGGGAACAGAGCCATTGAAAATTCATGGCTGTTGTTTCTGCAATGTTTCTCTCTTGGATATTAGCTTATGAAATTAACTACTTTGTGTCATAAGTATCTGAAGAAGCTGCTGTGGATTAGGCCTGGATTGAAGTTTTTTCATGAACCTACTGAAACCATGCTGCATACCTTCTCATGGTGGTTCATGTTTTTGAGATAAATCTTTGTCCATTTCTTTAAGCTAGTCAATTTTGACTTTAAACGTACGCTGACCTAAACTTGAATAAGTGGTATAGTTTATACATTCATTAATTTAGTTTTCATTTCTTATGAATGTTTTCTGACTATAATCATTATGGTTGGATGCTTTTTCAATTGTCAGTGCACATTTTGATTACAATTAGATATTACATTTTTCATGTGAGGTTTGGCATTTGATTATAATCTTAGGTCCTTTCTTACCCACTTGATCTTCTGGTCAGTGTTTTCGGGTGAATTTTATGTTGTGTTGGTAAATCCTCTTAGTTTTAATGAGTTATTAACTGTCCTTTGAGTTCAGCTTAGTTTCAAGTTAAAAGTCAGCCTAATGAGACAAGAACGAACTACTAAGTGTAAGAAATGATGAAATTCCCTTTCAACATTTTCAATTTCCTTGCAGACTGAATTGGAATGGATGAGGTGAATGAATCTCAATATCAACGGTGCGGGGTTATATACTATCTTGAGGGGGCTTTGGGGTGGGAGAAATAACAAAATCTTCAGAGGACTTGAATGTTTTTAAAACAATATTTGGTACCTTATTAGATTGTTTCGTATCTCACCGAGTCTTTGTTTCTAAGCTCTTTTGTAATTGTTCGTCAAGTCTTATTTCTCGATAATGGGTGAAGTTTTAAAGGCACTCTTTTATGTTCTCATCTTTTCTGTCTATACTGAAGATAACTTTTTCGTACTTAAAACGAGCTTTATATACAGGATGAAGTGATAGAAAGAGCTAAAAAGGCCAAGGAAAAGCAGCACGTGAGGCCAAAGAAGTACAACGACCCGTTTCCTCTTCAGTAATATCGCCTACAATCGAAGTTTCTTCGTCTCCAACTTCTTCAAGTCCCGACGCAGATTCAGAAAGTGGTGTGAATCAGGATCCTCCCCTTGGTGACTAA

mRNA sequence

ATGAGTAGTAGGATTACGTCTTCTGTTTCCTGGTCTCCCTTTTCGCTTGTACCCACTAAACCAAAAATTACCCATTATTCATCTCCATCTCTCCTTCCATTTCGCTCCTCTTCAACTCCTTCAAATCTCCAATTTCGTGGAATTTCACATTTTCAACCAAATGGTGATGGTGACAGCAGGACCATTCTAGATGCATTTTTTTTGGGAAAAGCTTTGGCAGAAGCCTTAACTGAGCGAATCGAGTCAACAATTGGAGAGGTTTTGAGTGGGATTGGTAAGCTGCAAGCTGAACAACAAAAACAAATTACTGATTTCCAGGCCAAAGAAGTACAACGACCCGTTTCCTCTTCAGTAATATCGCCTACAATCGAAGTTTCTTCGTCTCCAACTTCTTCAAGTCCCGACGCAGATTCAGAAAGTGGTGTGAATCAGGATCCTCCCCTTGGTGACTAA

Coding sequence (CDS)

ATGAGTAGTAGGATTACGTCTTCTGTTTCCTGGTCTCCCTTTTCGCTTGTACCCACTAAACCAAAAATTACCCATTATTCATCTCCATCTCTCCTTCCATTTCGCTCCTCTTCAACTCCTTCAAATCTCCAATTTCGTGGAATTTCACATTTTCAACCAAATGGTGATGGTGACAGCAGGACCATTCTAGATGCATTTTTTTTGGGAAAAGCTTTGGCAGAAGCCTTAACTGAGCGAATCGAGTCAACAATTGGAGAGGTTTTGAGTGGGATTGGTAAGCTGCAAGCTGAACAACAAAAACAAATTACTGATTTCCAGGCCAAAGAAGTACAACGACCCGTTTCCTCTTCAGTAATATCGCCTACAATCGAAGTTTCTTCGTCTCCAACTTCTTCAAGTCCCGACGCAGATTCAGAAAGTGGTGTGAATCAGGATCCTCCCCTTGGTGACTAA

Protein sequence

MSSRITSSVSWSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLQFRGISHFQPNGDGDSRTILDAFFLGKALAEALTERIESTIGEVLSGIGKLQAEQQKQITDFQAKEVQRPVSSSVISPTIEVSSSPTSSSPDADSESGVNQDPPLGD

Homology

[Close]

BLAST of IVF0001943 vs. ExPASy Swiss-Prot
Match: Q8LDV3 (Uncharacterized protein At4g13200, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g13200 PE=1 SV=2)

HSP 1 Score: 81.6 bits (200), Expect = 8.1e-15
Identity = 42/78 (53.85%), Postives = 58/78 (74.36%), Query Frame = 0


Query: 35  RSSSTPSNLQFRGISHFQPNGDGDSRTILDAFFLGKALAEALTERIESTIGEVLSGIGKL 94
           RS+S  SN   +G      +G+ +++++LDAFFLGKALAE + ERIEST+GEVLS IGK 
Sbjct: 49  RSTSLRSNCSTKGTD----SGENENKSVLDAFFLGKALAEVINERIESTVGEVLSTIGKF 108

Query: 95  QAEQQKQITDFQAKEVQR 113
           QAEQQKQ+ + Q + ++R
Sbjct: 109 QAEQQKQVQEIQEEVLER 122

[Close]

BLAST of IVF0001943 vs. ExPASy TrEMBL
Match: A0A1S3BHX5 (uncharacterized protein At4g13200, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103489747 PE=4 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 2.7e-66
Identity = 150/178 (84.27%), Postives = 150/178 (84.27%), Query Frame = 0


Query: 1   MSSRITSSVSWSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLQFRGISHFQPN------ 60
           MSSRITSSVSWSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLQFRGISHFQPN      
Sbjct: 1   MSSRITSSVSWSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLQFRGISHFQPNGSSRLL 60

Query: 61  -----GDGDSRTILDAFFLGKALAEALTERIESTIGEVLSGIGKLQAEQQKQITDFQ--- 120
                GDGDSRTILDAFFLGKALAEALTERIESTIGEVLSGIGKLQAEQQKQITDFQ   
Sbjct: 61  ARCSSGDGDSRTILDAFFLGKALAEALTERIESTIGEVLSGIGKLQAEQQKQITDFQDEV 120

Query: 121 --------------AKEVQRPVSSSVISPTIEVSSSPTSSSPDADSESGVNQDPPLGD 151
                         AKEVQRPVSSSVISPTIEVSSSPTSSSPDADSESGVNQDPPLGD
Sbjct: 121 IERAKKAKEKAAREAKEVQRPVSSSVISPTIEVSSSPTSSSPDADSESGVNQDPPLGD 178

[Close]

BLAST of IVF0001943 vs. ExPASy TrEMBL
Match: A0A0A0K6Q2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G337600 PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 2.8e-55
Identity = 134/178 (75.28%), Postives = 140/178 (78.65%), Query Frame = 0


Query: 1   MSSRITSSVSWSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLQFRGISHFQPN------ 60
           MSS +TSSVS SPFSLV TKPKITHYS PSLL FRSSSTPSNL+FRGISHFQPN      
Sbjct: 1   MSSGVTSSVSQSPFSLVTTKPKITHYSPPSLLLFRSSSTPSNLKFRGISHFQPNGPSRFL 60

Query: 61  -----GDGDSRTILDAFFLGKALAEALTERIESTIGEVLSGIGKLQAEQQKQITDFQ--- 120
                GDGDSRT+LDAFFLGKALAEALTERIESTIGEVLSGIG+LQAEQQKQITDFQ   
Sbjct: 61  ARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLSGIGRLQAEQQKQITDFQDEV 120

Query: 121 --------------AKEVQRPVSSSVISPTIEVSSSPTSSSPDADSESGVNQDPPLGD 151
                         +KEVQ PVSSSVISP IEV SSPTSSSPDADSES VNQDP LG+
Sbjct: 121 IERAKKAKEKAARDSKEVQGPVSSSVISPKIEVFSSPTSSSPDADSESVVNQDPSLGE 178

[Close]

BLAST of IVF0001943 vs. ExPASy TrEMBL
Match: A0A1S4DX82 (uncharacterized protein At4g13200, chloroplastic isoform X2 OS=Cucumis melo OX=3656 GN=LOC103489747 PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 3.7e-47
Identity = 106/119 (89.08%), Postives = 107/119 (89.92%), Query Frame = 0


Query: 1   MSSRITSSVSWSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLQFRGISHFQPN------ 60
           MSSRITSSVSWSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLQFRGISHFQPN      
Sbjct: 1   MSSRITSSVSWSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLQFRGISHFQPNGSSRLL 60

Query: 61  -----GDGDSRTILDAFFLGKALAEALTERIESTIGEVLSGIGKLQAEQQKQITDFQAK 109
                GDGDSRTILDAFFLGKALAEALTERIESTIGEVLSGIGKLQAEQQKQITDFQ +
Sbjct: 61  ARCSSGDGDSRTILDAFFLGKALAEALTERIESTIGEVLSGIGKLQAEQQKQITDFQTE 119

[Close]

BLAST of IVF0001943 vs. ExPASy TrEMBL
Match: A0A6J1DJG4 (uncharacterized protein At4g13200, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111021665 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 7.0e-38
Identity = 106/185 (57.30%), Postives = 120/185 (64.86%), Query Frame = 0


Query: 3   SRITSSVSWSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLQFRGISHFQPN-------- 62
           S I +SVS SPFSL+ TKPK TH+SSP+L   RS STPSNL+ RGI HF PN        
Sbjct: 2   SGIRASVSSSPFSLLHTKPKFTHHSSPNLAVSRSPSTPSNLKLRGIPHFPPNSSPRSKAR 61

Query: 63  ------------GDGDSRTILDAFFLGKALAEALTERIESTIGEVLSGIGKLQAEQQKQI 122
                       GDGDSRT+LDAFFLGKALAEALTERIEST+GEVLSGIG+LQAE+QKQI
Sbjct: 62  CCSSSGPGGFGSGDGDSRTVLDAFFLGKALAEALTERIESTVGEVLSGIGRLQAERQKQI 121

Query: 123 TDFQAK-----------------EVQRPVSSSVISPTIEVSSSPTS--SSPDADSESGVN 149
            DFQ +                 EVQ P+S S+ SPTI V+S+     S PD  SES VN
Sbjct: 122 VDFQEEVIERAKRAKDKAARDSIEVQEPISPSITSPTIAVTSTDPQQLSKPDPYSESTVN 181

[Close]

BLAST of IVF0001943 vs. ExPASy TrEMBL
Match: A0A6J1GNZ1 (uncharacterized protein At4g13200, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111456135 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 1.6e-37
Identity = 105/179 (58.66%), Postives = 125/179 (69.83%), Query Frame = 0


Query: 1   MSSRITSSVSWSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLQFRGISHFQ-----PNG 60
           MSS + SSVS S FS+VPTK KITH SSPSL+ FRSSST SNL+FR     +      +G
Sbjct: 1   MSSGVASSVSSSLFSVVPTKSKITHCSSPSLVRFRSSSTSSNLKFRPNGSLRFIASCSSG 60

Query: 61  DGDSRTILDAFFLGKALAEALTERIESTIGEVLSGIGKLQAEQQKQITDFQ--------- 120
           DGD+RT+LDAFF+GKA AE LTER+EST+GEVL  IG+LQAE+Q+QI DFQ         
Sbjct: 61  DGDNRTVLDAFFIGKAFAETLTERVESTVGEVLGEIGRLQAERQQQIIDFQEEVIDRAKK 120

Query: 121 --------AKEVQRPVSSSVISPTIEVSSSPTS-------SSPDADSESGVNQDPPLGD 151
                   AKE Q P+SSS+IS TIEV+SSPT+       SSP+A SE+ VNQDPP GD
Sbjct: 121 AKEKAERDAKEAQGPISSSIISATIEVTSSPTASSNGQQRSSPNAYSETVVNQDPPRGD 179

[Close]

BLAST of IVF0001943 vs. NCBI nr
Match: XP_008447268.1 (PREDICTED: uncharacterized protein At4g13200, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 258 bits (659), Expect = 1.39e-85
Identity = 150/178 (84.27%), Postives = 150/178 (84.27%), Query Frame = 0


Query: 1   MSSRITSSVSWSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLQFRGISHFQPNG----- 60
           MSSRITSSVSWSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLQFRGISHFQPNG     
Sbjct: 1   MSSRITSSVSWSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLQFRGISHFQPNGSSRLL 60

Query: 61  ------DGDSRTILDAFFLGKALAEALTERIESTIGEVLSGIGKLQAEQQKQITDFQ--- 120
                 DGDSRTILDAFFLGKALAEALTERIESTIGEVLSGIGKLQAEQQKQITDFQ   
Sbjct: 61  ARCSSGDGDSRTILDAFFLGKALAEALTERIESTIGEVLSGIGKLQAEQQKQITDFQDEV 120

Query: 121 --------------AKEVQRPVSSSVISPTIEVSSSPTSSSPDADSESGVNQDPPLGD 150
                         AKEVQRPVSSSVISPTIEVSSSPTSSSPDADSESGVNQDPPLGD
Sbjct: 121 IERAKKAKEKAAREAKEVQRPVSSSVISPTIEVSSSPTSSSPDADSESGVNQDPPLGD 178

[Close]

BLAST of IVF0001943 vs. NCBI nr
Match: XP_004139667.1 (uncharacterized protein At4g13200, chloroplastic [Cucumis sativus] >KGN44584.1 hypothetical protein Csa_015636 [Cucumis sativus])

HSP 1 Score: 221 bits (564), Expect = 4.09e-71
Identity = 134/178 (75.28%), Postives = 140/178 (78.65%), Query Frame = 0


Query: 1   MSSRITSSVSWSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLQFRGISHFQPNG----- 60
           MSS +TSSVS SPFSLV TKPKITHYS PSLL FRSSSTPSNL+FRGISHFQPNG     
Sbjct: 1   MSSGVTSSVSQSPFSLVTTKPKITHYSPPSLLLFRSSSTPSNLKFRGISHFQPNGPSRFL 60

Query: 61  ------DGDSRTILDAFFLGKALAEALTERIESTIGEVLSGIGKLQAEQQKQITDFQ--- 120
                 DGDSRT+LDAFFLGKALAEALTERIESTIGEVLSGIG+LQAEQQKQITDFQ   
Sbjct: 61  ARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLSGIGRLQAEQQKQITDFQDEV 120

Query: 121 --------------AKEVQRPVSSSVISPTIEVSSSPTSSSPDADSESGVNQDPPLGD 150
                         +KEVQ PVSSSVISP IEV SSPTSSSPDADSES VNQDP LG+
Sbjct: 121 IERAKKAKEKAARDSKEVQGPVSSSVISPKIEVFSSPTSSSPDADSESVVNQDPSLGE 178

[Close]

BLAST of IVF0001943 vs. NCBI nr
Match: XP_038900031.1 (uncharacterized protein At4g13200, chloroplastic [Benincasa hispida])

HSP 1 Score: 214 bits (544), Expect = 6.07e-68
Identity = 131/185 (70.81%), Postives = 140/185 (75.68%), Query Frame = 0


Query: 1   MSSRITSSVSWSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLQFRGISHFQPNG----- 60
           MSS +TSSVS SPFSLVPTKPKITHYSS SLL FRSSSTPSNL+FR ISHFQPNG     
Sbjct: 1   MSSGVTSSVSQSPFSLVPTKPKITHYSSQSLLLFRSSSTPSNLKFRRISHFQPNGSPRFI 60

Query: 61  ------DGDSRTILDAFFLGKALAEALTERIESTIGEVLSGIGKLQAEQQKQITDFQ--- 120
                 DGDSRT+LDAFFLGKALAEALTERIEST+GEVLSGIG+LQAEQQKQITDFQ   
Sbjct: 61  ARCSSGDGDSRTVLDAFFLGKALAEALTERIESTVGEVLSGIGRLQAEQQKQITDFQEEV 120

Query: 121 --------------AKEVQRPVSSSVISPTIEVSSSPTSSS-------PDADSESGVNQD 150
                         AKEVQ PVSSS+ SPTIEV+SSPT S+       PD DSE+ VNQD
Sbjct: 121 IERAKKAKDKAARDAKEVQGPVSSSITSPTIEVTSSPTPSTNRQQLSNPDQDSETVVNQD 180

[Close]

BLAST of IVF0001943 vs. NCBI nr
Match: XP_016900330.1 (PREDICTED: uncharacterized protein At4g13200, chloroplastic isoform X2 [Cucumis melo])

HSP 1 Score: 194 bits (493), Expect = 4.51e-61
Identity = 106/119 (89.08%), Postives = 107/119 (89.92%), Query Frame = 0


Query: 1   MSSRITSSVSWSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLQFRGISHFQPNG----- 60
           MSSRITSSVSWSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLQFRGISHFQPNG     
Sbjct: 1   MSSRITSSVSWSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLQFRGISHFQPNGSSRLL 60

Query: 61  ------DGDSRTILDAFFLGKALAEALTERIESTIGEVLSGIGKLQAEQQKQITDFQAK 108
                 DGDSRTILDAFFLGKALAEALTERIESTIGEVLSGIGKLQAEQQKQITDFQ +
Sbjct: 61  ARCSSGDGDSRTILDAFFLGKALAEALTERIESTIGEVLSGIGKLQAEQQKQITDFQTE 119

[Close]

BLAST of IVF0001943 vs. NCBI nr
Match: XP_022154385.1 (uncharacterized protein At4g13200, chloroplastic [Momordica charantia])

HSP 1 Score: 164 bits (414), Expect = 4.10e-48
Identity = 106/185 (57.30%), Postives = 120/185 (64.86%), Query Frame = 0


Query: 3   SRITSSVSWSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLQFRGISHFQPN-------- 62
           S I +SVS SPFSL+ TKPK TH+SSP+L   RS STPSNL+ RGI HF PN        
Sbjct: 2   SGIRASVSSSPFSLLHTKPKFTHHSSPNLAVSRSPSTPSNLKLRGIPHFPPNSSPRSKAR 61

Query: 63  ------------GDGDSRTILDAFFLGKALAEALTERIESTIGEVLSGIGKLQAEQQKQI 122
                       GDGDSRT+LDAFFLGKALAEALTERIEST+GEVLSGIG+LQAE+QKQI
Sbjct: 62  CCSSSGPGGFGSGDGDSRTVLDAFFLGKALAEALTERIESTVGEVLSGIGRLQAERQKQI 121

Query: 123 TDFQAK-----------------EVQRPVSSSVISPTIEVSSSPTS--SSPDADSESGVN 148
            DFQ +                 EVQ P+S S+ SPTI V+S+     S PD  SES VN
Sbjct: 122 VDFQEEVIERAKRAKDKAARDSIEVQEPISPSITSPTIAVTSTDPQQLSKPDPYSESTVN 181

[Close]

BLAST of IVF0001943 vs. TAIR 10
Match: AT4G13200.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, plastoglobule; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 97 Blast hits to 97 proteins in 46 species: Archae - 0; Bacteria - 65; Metazoa - 2; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). )

HSP 1 Score: 81.6 bits (200), Expect = 5.7e-16
Identity = 42/78 (53.85%), Postives = 58/78 (74.36%), Query Frame = 0


Query: 35  RSSSTPSNLQFRGISHFQPNGDGDSRTILDAFFLGKALAEALTERIESTIGEVLSGIGKL 94
           RS+S  SN   +G      +G+ +++++LDAFFLGKALAE + ERIEST+GEVLS IGK 
Sbjct: 49  RSTSLRSNCSTKGTD----SGENENKSVLDAFFLGKALAEVINERIESTVGEVLSTIGKF 108

Query: 95  QAEQQKQITDFQAKEVQR 113
           QAEQQKQ+ + Q + ++R
Sbjct: 109 QAEQQKQVQEIQEEVLER 122

The following BLAST results are available for this feature:

BLAST of IVF0001943 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LDV3	8.1e-15	53.85	Uncharacterized protein At4g13200, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]

BLAST of IVF0001943 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BHX5	2.7e-66	84.27	uncharacterized protein At4g13200, chloroplastic isoform X1 OS=Cucumis melo OX=3...	[more]
A0A0A0K6Q2	2.8e-55	75.28	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G337600 PE=4 SV=1	[more]
A0A1S4DX82	3.7e-47	89.08	uncharacterized protein At4g13200, chloroplastic isoform X2 OS=Cucumis melo OX=3...	[more]
A0A6J1DJG4	7.0e-38	57.30	uncharacterized protein At4g13200, chloroplastic OS=Momordica charantia OX=3673 ...	[more]
A0A6J1GNZ1	1.6e-37	58.66	uncharacterized protein At4g13200, chloroplastic-like OS=Cucurbita moschata OX=3...	[more]

BLAST of IVF0001943 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008447268.1	1.39e-85	84.27	PREDICTED: uncharacterized protein At4g13200, chloroplastic isoform X1 [Cucumis ...	[more]
XP_004139667.1	4.09e-71	75.28	uncharacterized protein At4g13200, chloroplastic [Cucumis sativus] >KGN44584.1 h...	[more]
XP_038900031.1	6.07e-68	70.81	uncharacterized protein At4g13200, chloroplastic [Benincasa hispida]	[more]
XP_016900330.1	4.51e-61	89.08	PREDICTED: uncharacterized protein At4g13200, chloroplastic isoform X2 [Cucumis ...	[more]
XP_022154385.1	4.10e-48	57.30	uncharacterized protein At4g13200, chloroplastic [Momordica charantia]	[more]

BLAST of IVF0001943 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G13200.1	5.7e-16	53.85	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 105..140
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 105..150
IPR040003	Plastoglobular protein 18-like	PANTHER	PTHR35745	BNACNNG14650D PROTEIN	coord: 8..111

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0001943.1	IVF0001943.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010027	thylakoid membrane organization
cellular_component	GO:0009535	chloroplast thylakoid membrane