IVF0001809 (gene) Melon (IVF77) v1

Overview


Name	IVF0001809
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Lon protease 2-like
Location	chr02: 12599521 .. 12599736 (-)
RNA-Seq Expression	IVF0001809
Synteny	IVF0001809

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGACTGGTTGGAGGCGGAAGAAGGCGTCGTTGGAGGCGAAAGAAGGCGTCGTTGGAGGCGGAAGAAGGCGTCGTGCAGAAGAAGGCGTTCTTGAGAATGGTAAGGCGGAAGAAGGGAGAAAATCGTGGAGAATATATTGGAGAGGGAGAAAATCACGCAGACGAATGGAGGAGGAGAAATTCGCGCCAGGATTCTTTTTAAAACAAGGGTAA

mRNA sequence

ATGACGACTGGTTGGAGGCGGAAGAAGGCGTCGTTGGAGGCGAAAGAAGGCGTCGTTGGAGGCGGAAGAAGGCGTCGTGCAGAAGAAGGCGTTCTTGAGAATGGTAAGGCGGAAGAAGGGAGAAAATCGTGGAGAATATATTGGAGAGGGAGAAAATCACGCAGACGAATGGAGGAGGAGAAATTCGCGCCAGGATTCTTTTTAAAACAAGGGTAA

Coding sequence (CDS)

ATGACGACTGGTTGGAGGCGGAAGAAGGCGTCGTTGGAGGCGAAAGAAGGCGTCGTTGGAGGCGGAAGAAGGCGTCGTGCAGAAGAAGGCGTTCTTGAGAATGGTAAGGCGGAAGAAGGGAGAAAATCGTGGAGAATATATTGGAGAGGGAGAAAATCACGCAGACGAATGGAGGAGGAGAAATTCGCGCCAGGATTCTTTTTAAAACAAGGGTAA

Protein sequence

MTTGWRRKKASLEAKEGVVGGGRRRRAEEGVLENGKAEEGRKSWRIYWRGRKSRRRMEEEKFAPGFFLKQG

Homology

[Close]

BLAST of IVF0001809 vs. ExPASy TrEMBL
Match: A0A5A7SHI4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold541G001610 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 5.7e-30
Identity = 69/71 (97.18%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1   MTTGWRRKKASLEAKEGVVGGGRRRRAEEGVLENGKAEEGRKSWRIYWRGRKSRRRMEEE 60
           MTTGWR+KKASLEAKEG+VGGGRRRRAEEGVLENGKAEEGRKSWRIYWRGRKSRRRMEEE
Sbjct: 99  MTTGWRQKKASLEAKEGIVGGGRRRRAEEGVLENGKAEEGRKSWRIYWRGRKSRRRMEEE 158

Query: 61  KFAPGFFLKQG 72
           KFAPGFFLKQG
Sbjct: 159 KFAPGFFLKQG 169

[Close]

BLAST of IVF0001809 vs. ExPASy TrEMBL
Match: A0A5D3CTI7 (Lon protease 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold556G00120 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 4.8e-21
Identity = 59/69 (85.51%), Postives = 61/69 (88.41%), Query Frame = 0


Query: 5  WRRKKASLEAKEGVVGGGRRRRAEEGVL--ENGKAEEGRKSWRIYWRGRKSRRRMEEEKF 64
          WRRKK  LEA+EGVVGGGRRRRA+EGVL  ENGK EEGRKSWRIYWRGRKSRR MEEEKF
Sbjct: 27 WRRKKTFLEAEEGVVGGGRRRRAKEGVLNVENGKDEEGRKSWRIYWRGRKSRRGMEEEKF 86

Query: 65 APGFFLKQG 72
          A  FFLKQG
Sbjct: 87 ASVFFLKQG 95

[Close]

BLAST of IVF0001809 vs. ExPASy TrEMBL
Match: A0A5D3CCS9 (50S ribosomal protein L15 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G001030 PE=3 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 3.5e-19
Identity = 63/97 (64.95%), Postives = 64/97 (65.98%), Query Frame = 0


Query: 4   GWRRKKA----------------SLEAKEGVVGG-------------GRRRRAEEGVLEN 63
           GWRRKK                  LEA+EGVVGG             GRRRRAEEGVLEN
Sbjct: 8   GWRRKKLWLETEDDDWLETEDDDWLEAEEGVVGGERRRRWRRNKASCGRRRRAEEGVLEN 67

Query: 64  GKAEEGRKSWRIYWRGRKSRRRMEEEKFAPGFFLKQG 72
           GKAEE RKSWRIYWRGRKSRRRMEEEKFAPG FLKQG
Sbjct: 68  GKAEEVRKSWRIYWRGRKSRRRMEEEKFAPGLFLKQG 104

[Close]

BLAST of IVF0001809 vs. ExPASy TrEMBL
Match: A0A5A7TVG1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold157G00760 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 9.1e-12
Identity = 42/64 (65.62%), Postives = 47/64 (73.44%), Query Frame = 0


Query: 1  MTTGWRRKKASLEAKEGVVGGGRRRRAEEGVLENGKAEEGRKSWRIYWRGRKSRRRMEEE 60
          MTTGWR+KK  LEA+EGV+            +ENGK E+GRKSWRIYWRGRKSRR MEEE
Sbjct: 1  MTTGWRQKKLWLEAEEGVLN-----------VENGKDEKGRKSWRIYWRGRKSRRGMEEE 53

Query: 61 KFAP 65
          KF P
Sbjct: 61 KFTP 53

[Close]

BLAST of IVF0001809 vs. ExPASy TrEMBL
Match: A0A5A7TUB6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold466G00040 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.7e-05
Identity = 29/32 (90.62%), Postives = 30/32 (93.75%), Query Frame = 0


Query: 1  MTTGWRRKKASLEAKEGVVGGGRRRRAEEGVL 33
          MTTGWRRKKASLEA EGVVGGG RRRAEEGV+
Sbjct: 22 MTTGWRRKKASLEANEGVVGGGTRRRAEEGVV 53

[Close]

BLAST of IVF0001809 vs. NCBI nr
Match: KAA0025306.1 (hypothetical protein E6C27_scaffold541G001610 [Cucumis melo var. makuwa])

HSP 1 Score: 138 bits (348), Expect = 8.82e-40
Identity = 69/71 (97.18%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1   MTTGWRRKKASLEAKEGVVGGGRRRRAEEGVLENGKAEEGRKSWRIYWRGRKSRRRMEEE 60
           MTTGWR+KKASLEAKEG+VGGGRRRRAEEGVLENGKAEEGRKSWRIYWRGRKSRRRMEEE
Sbjct: 99  MTTGWRQKKASLEAKEGIVGGGRRRRAEEGVLENGKAEEGRKSWRIYWRGRKSRRRMEEE 158

Query: 61  KFAPGFFLKQG 71
           KFAPGFFLKQG
Sbjct: 159 KFAPGFFLKQG 169

[Close]

BLAST of IVF0001809 vs. NCBI nr
Match: KAA0063229.1 (lon protease 2-like [Cucumis melo var. makuwa] >TYK13479.1 lon protease 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 109 bits (272), Expect = 1.40e-26
Identity = 59/69 (85.51%), Postives = 61/69 (88.41%), Query Frame = 0


Query: 5  WRRKKASLEAKEGVVGGGRRRRAEEGVL--ENGKAEEGRKSWRIYWRGRKSRRRMEEEKF 64
          WRRKK  LEA+EGVVGGGRRRRA+EGVL  ENGK EEGRKSWRIYWRGRKSRR MEEEKF
Sbjct: 27 WRRKKTFLEAEEGVVGGGRRRRAKEGVLNVENGKDEEGRKSWRIYWRGRKSRRGMEEEKF 86

Query: 65 APGFFLKQG 71
          A  FFLKQG
Sbjct: 87 ASVFFLKQG 95

[Close]

BLAST of IVF0001809 vs. NCBI nr
Match: KAA0034559.1 (50S ribosomal protein L15 [Cucumis melo var. makuwa] >TYK09112.1 50S ribosomal protein L15 [Cucumis melo var. makuwa])

HSP 1 Score: 103 bits (256), Expect = 3.29e-24
Identity = 63/97 (64.95%), Postives = 64/97 (65.98%), Query Frame = 0


Query: 4   GWRRKKASLE----------------AKEGVVGG-------------GRRRRAEEGVLEN 63
           GWRRKK  LE                A+EGVVGG             GRRRRAEEGVLEN
Sbjct: 8   GWRRKKLWLETEDDDWLETEDDDWLEAEEGVVGGERRRRWRRNKASCGRRRRAEEGVLEN 67

Query: 64  GKAEEGRKSWRIYWRGRKSRRRMEEEKFAPGFFLKQG 71
           GKAEE RKSWRIYWRGRKSRRRMEEEKFAPG FLKQG
Sbjct: 68  GKAEEVRKSWRIYWRGRKSRRRMEEEKFAPGLFLKQG 104

[Close]

BLAST of IVF0001809 vs. NCBI nr
Match: KAA0046136.1 (hypothetical protein E6C27_scaffold157G00760 [Cucumis melo var. makuwa])

HSP 1 Score: 78.2 bits (191), Expect = 6.00e-15
Identity = 42/64 (65.62%), Postives = 47/64 (73.44%), Query Frame = 0


Query: 1  MTTGWRRKKASLEAKEGVVGGGRRRRAEEGVLENGKAEEGRKSWRIYWRGRKSRRRMEEE 60
          MTTGWR+KK  LEA+EGV+            +ENGK E+GRKSWRIYWRGRKSRR MEEE
Sbjct: 1  MTTGWRQKKLWLEAEEGVLN-----------VENGKDEKGRKSWRIYWRGRKSRRGMEEE 53

Query: 61 KFAP 64
          KF P
Sbjct: 61 KFTP 53

[Close]

BLAST of IVF0001809 vs. NCBI nr
Match: KAA0047052.1 (hypothetical protein E6C27_scaffold466G00040 [Cucumis melo var. makuwa])

HSP 1 Score: 57.8 bits (138), Expect = 3.12e-08
Identity = 29/32 (90.62%), Postives = 30/32 (93.75%), Query Frame = 0


Query: 1  MTTGWRRKKASLEAKEGVVGGGRRRRAEEGVL 32
          MTTGWRRKKASLEA EGVVGGG RRRAEEGV+
Sbjct: 22 MTTGWRRKKASLEANEGVVGGGTRRRAEEGVV 53

The following BLAST results are available for this feature:

BLAST of IVF0001809 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0001809 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SHI4	5.7e-30	97.18	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3CTI7	4.8e-21	85.51	Lon protease 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold556G...	[more]
A0A5D3CCS9	3.5e-19	64.95	50S ribosomal protein L15 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A5A7TVG1	9.1e-12	65.63	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7TUB6	1.7e-05	90.63	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of IVF0001809 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0025306.1	8.82e-40	97.18	hypothetical protein E6C27_scaffold541G001610 [Cucumis melo var. makuwa]	[more]
KAA0063229.1	1.40e-26	85.51	lon protease 2-like [Cucumis melo var. makuwa] >TYK13479.1 lon protease 2-like [...	[more]
KAA0034559.1	3.29e-24	64.95	50S ribosomal protein L15 [Cucumis melo var. makuwa] >TYK09112.1 50S ribosomal p...	[more]
KAA0046136.1	6.00e-15	65.63	hypothetical protein E6C27_scaffold157G00760 [Cucumis melo var. makuwa]	[more]
KAA0047052.1	3.12e-08	90.63	hypothetical protein E6C27_scaffold466G00040 [Cucumis melo var. makuwa]	[more]

BLAST of IVF0001809 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 8..37
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..37

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0001809.1	IVF0001809.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005622	intracellular anatomical structure
molecular_function	GO:0008233	peptidase activity