Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGCCACTGGTTGCGAATCGTTGGCTAGAAGTCCAGAGAACTTGGTAGATGTAATATCAGGAAAACAGGTTCATCTCTTTCCATTCAATTGGTTTCTATCTTGTAAACAATTTTATGGATATGCATTCTTATTCTACAGGACCTTACATTGGGTGAGATTTCAAGAGAGTTCTTACTAACGGGCATTGAGATTCCAGAATGGTTCAGCTATAAGTCTACTACAAATTCTGTGACTGCTAGCATTCGTCACTATCCAGATATGGAAAGGATTTTGGCTGCCTGTGTTAGTTTCACAGTGAATGGAGATTCGTCTACAAGGGGAGCCCTAGTTTCATGCAATATATTCATCTGCAATCAACTCTATTGTTCTTTTTCAAGATCATTTCTTCCATCAAAATCAGAGTATATGTGGTTAGTAACAACTTCTCAAGCTCGGGAATCCATGGAGGTGTAGGATTGGAATAAAGTTTTGGTCTGGTTTGAAGCACAAGATGAGGTCAATGTAACTATAAGAAGTTGTGGTGTCCATGTCACTGAAGAGCTCCATGGGTTACAAACGGATCTCAACTGTCCGGTGGTAACTTTTGCTGATTTTTATCAACAGGAGAAATTGCCAGATCTGTAA
mRNA sequence
ATGGATGCCACTGGTTGCGAATCGTTGGCTAGAAGTCCAGAGAACTTGGTAGATGTAATATCAGGAAAACAGGACCTTACATTGGGTGAGATTTCAAGAGAGTTCTTACTAACGGGCATTGAGATTCCAGAATGGTTCAGCTATAAGTCTACTACAAATTCTGTGACTGCTAGCATTCGTCACTATCCAGATATGGAAAGGATTTTGGCTGCCTGTGTTAGTTTCACAGTGAATGGAGATTCGTCTACAAGGGGAGCCCTAGTTTCATGCAATATATTCATCTGCAATCAACTCTATTGTTCTTTTTCAAGATCATTTCTTCCATCAAAATCAGAGTATATGTGGTTAGATTGGAATAAAGTTTTGGTCTGGTTTGAAGCACAAGATGAGGTCAATGTAACTATAAGAAGTTGTGGTGTCCATGTCACTGAAGAGCTCCATGGGTTACAAACGGATCTCAACTGTCCGGTGGTAACTTTTGCTGATTTTTATCAACAGGAGAAATTGCCAGATCTGTAA
Coding sequence (CDS)
ATGGATGCCACTGGTTGCGAATCGTTGGCTAGAAGTCCAGAGAACTTGGTAGATGTAATATCAGGAAAACAGGACCTTACATTGGGTGAGATTTCAAGAGAGTTCTTACTAACGGGCATTGAGATTCCAGAATGGTTCAGCTATAAGTCTACTACAAATTCTGTGACTGCTAGCATTCGTCACTATCCAGATATGGAAAGGATTTTGGCTGCCTGTGTTAGTTTCACAGTGAATGGAGATTCGTCTACAAGGGGAGCCCTAGTTTCATGCAATATATTCATCTGCAATCAACTCTATTGTTCTTTTTCAAGATCATTTCTTCCATCAAAATCAGAGTATATGTGGTTAGATTGGAATAAAGTTTTGGTCTGGTTTGAAGCACAAGATGAGGTCAATGTAACTATAAGAAGTTGTGGTGTCCATGTCACTGAAGAGCTCCATGGGTTACAAACGGATCTCAACTGTCCGGTGGTAACTTTTGCTGATTTTTATCAACAGGAGAAATTGCCAGATCTGTAA
Protein sequence
MDATGCESLARSPENLVDVISGKQDLTLGEISREFLLTGIEIPEWFSYKSTTNSVTASIRHYPDMERILAACVSFTVNGDSSTRGALVSCNIFICNQLYCSFSRSFLPSKSEYMWLDWNKVLVWFEAQDEVNVTIRSCGVHVTEELHGLQTDLNCPVVTFADFYQQEKLPDL
Homology
BLAST of IVF0001718 vs. ExPASy TrEMBL
Match:
A0A5D3D473 (TMV resistance protein N-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G00600 PE=4 SV=1)
HSP 1 Score: 332.4 bits (851), Expect = 1.1e-87
Identity = 164/185 (88.65%), Postives = 167/185 (90.27%), Query Frame = 0
Query: 1 MDATGCESLARSPENLVDVISGKQDLTLGEISREFLLTGIEIPEWFSYKSTTNSVTASIR 60
MDATGCESLARSPENLVDVISGKQDLTLGEISREF LTGIEIPEWFSYKSTTNSVTASIR
Sbjct: 1 MDATGCESLARSPENLVDVISGKQDLTLGEISREFFLTGIEIPEWFSYKSTTNSVTASIR 60
Query: 61 HYPDMERILAACVSFTVNGDSSTRGALVSCNIFICNQLYCSFSRSFLPSKSEYMWL---- 120
HYPDMER LAACVSFTVNGDSSTR AL+SCNIFICN+LYCSFSRSFLPSKSEYMWL
Sbjct: 61 HYPDMERTLAACVSFTVNGDSSTRVALISCNIFICNRLYCSFSRSFLPSKSEYMWLVTTS 120
Query: 121 ---------DWNKVLVWFEAQDEVNVTIRSCGVHVTEELHGLQTDLNCPVVTFADFYQQE 173
DWNKVLVWFEAQDEVNVT+RSCGVHVTEELHGLQTDLN PVVTFADFYQ E
Sbjct: 121 LARESMEVQDWNKVLVWFEAQDEVNVTMRSCGVHVTEELHGLQTDLNWPVVTFADFYQPE 180
BLAST of IVF0001718 vs. ExPASy TrEMBL
Match:
A0A5A7V617 (TMV resistance protein N-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold329G002010 PE=4 SV=1)
HSP 1 Score: 332.4 bits (851), Expect = 1.1e-87
Identity = 164/185 (88.65%), Postives = 167/185 (90.27%), Query Frame = 0
Query: 1 MDATGCESLARSPENLVDVISGKQDLTLGEISREFLLTGIEIPEWFSYKSTTNSVTASIR 60
MDATGCESLARSPENLVDVISGKQDLTLGEISREF LTGIEIPEWFSYKSTTNSVTASIR
Sbjct: 1 MDATGCESLARSPENLVDVISGKQDLTLGEISREFFLTGIEIPEWFSYKSTTNSVTASIR 60
Query: 61 HYPDMERILAACVSFTVNGDSSTRGALVSCNIFICNQLYCSFSRSFLPSKSEYMWL---- 120
HYPDMER LAACVSFTVNGDSSTR AL+SCNIFICN+LYCSFSRSFLPSKSEYMWL
Sbjct: 61 HYPDMERTLAACVSFTVNGDSSTRVALISCNIFICNRLYCSFSRSFLPSKSEYMWLVTTS 120
Query: 121 ---------DWNKVLVWFEAQDEVNVTIRSCGVHVTEELHGLQTDLNCPVVTFADFYQQE 173
DWNKVLVWFEAQDEVNVT+RSCGVHVTEELHGLQTDLN PVVTFADFYQ E
Sbjct: 121 LARESMEVQDWNKVLVWFEAQDEVNVTMRSCGVHVTEELHGLQTDLNWPVVTFADFYQPE 180
BLAST of IVF0001718 vs. ExPASy TrEMBL
Match:
A0A1S3C088 (TMV resistance protein N-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495388 PE=4 SV=1)
HSP 1 Score: 273.5 bits (698), Expect = 6.1e-70
Identity = 135/188 (71.81%), Postives = 151/188 (80.32%), Query Frame = 0
Query: 1 MDATGCESLARSPENLVDVISGKQDLTLGEISREFLLTGIEIPEWFSYKSTTNSVTASIR 60
MDA+GCESLAR+P+N+VD+IS KQDLTLGEISREFLLTGIEIPEWFSYK+T+N VTAS R
Sbjct: 1006 MDASGCESLARNPDNIVDIISKKQDLTLGEISREFLLTGIEIPEWFSYKTTSNLVTASFR 1065
Query: 61 HYPDMERILAACVSFTVNGDSSTRGALVSCNIFICNQLYCSFSRSFLPSKSEYMWL---- 120
HYPDMER LAACVSF VNGDSS RGA +SC+IFIC++L+ SFSR FLPSKSEYMWL
Sbjct: 1066 HYPDMERTLAACVSFKVNGDSSKRGAQISCSIFICSKLHSSFSRPFLPSKSEYMWLVTTS 1125
Query: 121 ---------DWNKVLVWF---EAQDEVNVTIRSCGVHVTEELHGLQTDLNCPVVTFADFY 173
DWNKVLVWF EA EVN TI CGVHVTEELHG+Q D+ P+V +ADFY
Sbjct: 1126 LAWGSMEVNDWNKVLVWFEVHEAHSEVNATITRCGVHVTEELHGIQMDVKWPMVNYADFY 1185
BLAST of IVF0001718 vs. ExPASy TrEMBL
Match:
A0A1S3C093 (TMV resistance protein N-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103495388 PE=4 SV=1)
HSP 1 Score: 273.5 bits (698), Expect = 6.1e-70
Identity = 135/188 (71.81%), Postives = 151/188 (80.32%), Query Frame = 0
Query: 1 MDATGCESLARSPENLVDVISGKQDLTLGEISREFLLTGIEIPEWFSYKSTTNSVTASIR 60
MDA+GCESLAR+P+N+VD+IS KQDLTLGEISREFLLTGIEIPEWFSYK+T+N VTAS R
Sbjct: 819 MDASGCESLARNPDNIVDIISKKQDLTLGEISREFLLTGIEIPEWFSYKTTSNLVTASFR 878
Query: 61 HYPDMERILAACVSFTVNGDSSTRGALVSCNIFICNQLYCSFSRSFLPSKSEYMWL---- 120
HYPDMER LAACVSF VNGDSS RGA +SC+IFIC++L+ SFSR FLPSKSEYMWL
Sbjct: 879 HYPDMERTLAACVSFKVNGDSSKRGAQISCSIFICSKLHSSFSRPFLPSKSEYMWLVTTS 938
Query: 121 ---------DWNKVLVWF---EAQDEVNVTIRSCGVHVTEELHGLQTDLNCPVVTFADFY 173
DWNKVLVWF EA EVN TI CGVHVTEELHG+Q D+ P+V +ADFY
Sbjct: 939 LAWGSMEVNDWNKVLVWFEVHEAHSEVNATITRCGVHVTEELHGIQMDVKWPMVNYADFY 998
BLAST of IVF0001718 vs. ExPASy TrEMBL
Match:
A0A5D3D435 (TMV resistance protein N-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G00090 PE=4 SV=1)
HSP 1 Score: 266.2 bits (679), Expect = 9.8e-68
Identity = 133/189 (70.37%), Postives = 152/189 (80.42%), Query Frame = 0
Query: 1 MDATGCESLARSPENLVDVISGKQDLTLGEISREFLLTGIEIPEWFSYKSTTNSVTASIR 60
MDA+GCESL +SP+N+VD+IS KQDL LGEISREFLLTGI+IPEWFSYK+T+N V AS R
Sbjct: 1 MDASGCESLVQSPDNIVDIISKKQDLILGEISREFLLTGIKIPEWFSYKTTSNLVHASFR 60
Query: 61 HYPDMERILAACVSFTVNGDSSTRGALVSCNIFICNQLYCSFSRSFLPSKSEYMWL---- 120
HYPDMER LAA +SF VNGDSS RGA +SCNIFICN+L+CSFSRSFLPSKSEYMWL
Sbjct: 61 HYPDMERTLAAGISFKVNGDSSERGARISCNIFICNKLHCSFSRSFLPSKSEYMWLLTTS 120
Query: 121 ---------DWNKVLVWF---EAQDEVNVTI-RSCGVHVTEELHGLQTDLNCPVVTFADF 173
DWNKVLVWF EA EVN+TI RSCGVH+ EEL G+QTD+ P+V +ADF
Sbjct: 121 LAWGSMEVNDWNKVLVWFEVHEAHGEVNLTITRSCGVHIIEELQGIQTDVKWPMVNYADF 180
BLAST of IVF0001718 vs. NCBI nr
Match:
TYK18345.1 (TMV resistance protein N-like isoform X1 [Cucumis melo var. makuwa])
HSP 1 Score: 330 bits (846), Expect = 6.60e-102
Identity = 164/185 (88.65%), Postives = 167/185 (90.27%), Query Frame = 0
Query: 1 MDATGCESLARSPENLVDVISGKQDLTLGEISREFLLTGIEIPEWFSYKSTTNSVTASIR 60
MDATGCESLARSPENLVDVISGKQDLTLGEISREF LTGIEIPEWFSYKSTTNSVTASIR
Sbjct: 1 MDATGCESLARSPENLVDVISGKQDLTLGEISREFFLTGIEIPEWFSYKSTTNSVTASIR 60
Query: 61 HYPDMERILAACVSFTVNGDSSTRGALVSCNIFICNQLYCSFSRSFLPSKSEYMWL---- 120
HYPDMER LAACVSFTVNGDSSTR AL+SCNIFICN+LYCSFSRSFLPSKSEYMWL
Sbjct: 61 HYPDMERTLAACVSFTVNGDSSTRVALISCNIFICNRLYCSFSRSFLPSKSEYMWLVTTS 120
Query: 121 ---------DWNKVLVWFEAQDEVNVTIRSCGVHVTEELHGLQTDLNCPVVTFADFYQQE 172
DWNKVLVWFEAQDEVNVT+RSCGVHVTEELHGLQTDLN PVVTFADFYQ E
Sbjct: 121 LARESMEVQDWNKVLVWFEAQDEVNVTMRSCGVHVTEELHGLQTDLNWPVVTFADFYQPE 180
BLAST of IVF0001718 vs. NCBI nr
Match:
KAA0063682.1 (TMV resistance protein N-like isoform X1 [Cucumis melo var. makuwa])
HSP 1 Score: 330 bits (846), Expect = 1.23e-101
Identity = 164/185 (88.65%), Postives = 167/185 (90.27%), Query Frame = 0
Query: 1 MDATGCESLARSPENLVDVISGKQDLTLGEISREFLLTGIEIPEWFSYKSTTNSVTASIR 60
MDATGCESLARSPENLVDVISGKQDLTLGEISREF LTGIEIPEWFSYKSTTNSVTASIR
Sbjct: 1 MDATGCESLARSPENLVDVISGKQDLTLGEISREFFLTGIEIPEWFSYKSTTNSVTASIR 60
Query: 61 HYPDMERILAACVSFTVNGDSSTRGALVSCNIFICNQLYCSFSRSFLPSKSEYMWL---- 120
HYPDMER LAACVSFTVNGDSSTR AL+SCNIFICN+LYCSFSRSFLPSKSEYMWL
Sbjct: 61 HYPDMERTLAACVSFTVNGDSSTRVALISCNIFICNRLYCSFSRSFLPSKSEYMWLVTTS 120
Query: 121 ---------DWNKVLVWFEAQDEVNVTIRSCGVHVTEELHGLQTDLNCPVVTFADFYQQE 172
DWNKVLVWFEAQDEVNVT+RSCGVHVTEELHGLQTDLN PVVTFADFYQ E
Sbjct: 121 LARESMEVQDWNKVLVWFEAQDEVNVTMRSCGVHVTEELHGLQTDLNWPVVTFADFYQPE 180
BLAST of IVF0001718 vs. NCBI nr
Match:
TYK18303.1 (TMV resistance protein N-like isoform X2 [Cucumis melo var. makuwa])
HSP 1 Score: 264 bits (674), Expect = 3.44e-86
Identity = 133/189 (70.37%), Postives = 152/189 (80.42%), Query Frame = 0
Query: 1 MDATGCESLARSPENLVDVISGKQDLTLGEISREFLLTGIEIPEWFSYKSTTNSVTASIR 60
MDA+GCESL +SP+N+VD+IS KQDL LGEISREFLLTGI+IPEWFSYK+T+N V AS R
Sbjct: 1 MDASGCESLVQSPDNIVDIISKKQDLILGEISREFLLTGIKIPEWFSYKTTSNLVHASFR 60
Query: 61 HYPDMERILAACVSFTVNGDSSTRGALVSCNIFICNQLYCSFSRSFLPSKSEYMWL---- 120
HYPDMER LAA +SF VNGDSS RGA +SCNIFICN+L+CSFSRSFLPSKSEYMWL
Sbjct: 61 HYPDMERTLAAGISFKVNGDSSERGARISCNIFICNKLHCSFSRSFLPSKSEYMWLLTTS 120
Query: 121 ---------DWNKVLVWFE---AQDEVNVTI-RSCGVHVTEELHGLQTDLNCPVVTFADF 172
DWNKVLVWFE A EVN+TI RSCGVH+ EEL G+QTD+ P+V +ADF
Sbjct: 121 LAWGSMEVNDWNKVLVWFEVHEAHGEVNLTITRSCGVHIIEELQGIQTDVKWPMVNYADF 180
BLAST of IVF0001718 vs. NCBI nr
Match:
XP_008455159.1 (PREDICTED: TMV resistance protein N-like isoform X2 [Cucumis melo])
HSP 1 Score: 271 bits (693), Expect = 3.91e-81
Identity = 135/188 (71.81%), Postives = 151/188 (80.32%), Query Frame = 0
Query: 1 MDATGCESLARSPENLVDVISGKQDLTLGEISREFLLTGIEIPEWFSYKSTTNSVTASIR 60
MDA+GCESLAR+P+N+VD+IS KQDLTLGEISREFLLTGIEIPEWFSYK+T+N VTAS R
Sbjct: 819 MDASGCESLARNPDNIVDIISKKQDLTLGEISREFLLTGIEIPEWFSYKTTSNLVTASFR 878
Query: 61 HYPDMERILAACVSFTVNGDSSTRGALVSCNIFICNQLYCSFSRSFLPSKSEYMWL---- 120
HYPDMER LAACVSF VNGDSS RGA +SC+IFIC++L+ SFSR FLPSKSEYMWL
Sbjct: 879 HYPDMERTLAACVSFKVNGDSSKRGAQISCSIFICSKLHSSFSRPFLPSKSEYMWLVTTS 938
Query: 121 ---------DWNKVLVWFE---AQDEVNVTIRSCGVHVTEELHGLQTDLNCPVVTFADFY 172
DWNKVLVWFE A EVN TI CGVHVTEELHG+Q D+ P+V +ADFY
Sbjct: 939 LAWGSMEVNDWNKVLVWFEVHEAHSEVNATITRCGVHVTEELHGIQMDVKWPMVNYADFY 998
BLAST of IVF0001718 vs. NCBI nr
Match:
XP_008455151.1 (PREDICTED: TMV resistance protein N-like isoform X1 [Cucumis melo])
HSP 1 Score: 271 bits (693), Expect = 9.07e-81
Identity = 135/188 (71.81%), Postives = 151/188 (80.32%), Query Frame = 0
Query: 1 MDATGCESLARSPENLVDVISGKQDLTLGEISREFLLTGIEIPEWFSYKSTTNSVTASIR 60
MDA+GCESLAR+P+N+VD+IS KQDLTLGEISREFLLTGIEIPEWFSYK+T+N VTAS R
Sbjct: 1006 MDASGCESLARNPDNIVDIISKKQDLTLGEISREFLLTGIEIPEWFSYKTTSNLVTASFR 1065
Query: 61 HYPDMERILAACVSFTVNGDSSTRGALVSCNIFICNQLYCSFSRSFLPSKSEYMWL---- 120
HYPDMER LAACVSF VNGDSS RGA +SC+IFIC++L+ SFSR FLPSKSEYMWL
Sbjct: 1066 HYPDMERTLAACVSFKVNGDSSKRGAQISCSIFICSKLHSSFSRPFLPSKSEYMWLVTTS 1125
Query: 121 ---------DWNKVLVWFE---AQDEVNVTIRSCGVHVTEELHGLQTDLNCPVVTFADFY 172
DWNKVLVWFE A EVN TI CGVHVTEELHG+Q D+ P+V +ADFY
Sbjct: 1126 LAWGSMEVNDWNKVLVWFEVHEAHSEVNATITRCGVHVTEELHGIQMDVKWPMVNYADFY 1185
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5D3D473 | 1.1e-87 | 88.65 | TMV resistance protein N-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 ... | [more] |
| A0A5A7V617 | 1.1e-87 | 88.65 | TMV resistance protein N-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 ... | [more] |
| A0A1S3C088 | 6.1e-70 | 71.81 | TMV resistance protein N-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495388... | [more] |
| A0A1S3C093 | 6.1e-70 | 71.81 | TMV resistance protein N-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103495388... | [more] |
| A0A5D3D435 | 9.8e-68 | 70.37 | TMV resistance protein N-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 ... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| TYK18345.1 | 6.60e-102 | 88.65 | TMV resistance protein N-like isoform X1 [Cucumis melo var. makuwa] | [more] |
| KAA0063682.1 | 1.23e-101 | 88.65 | TMV resistance protein N-like isoform X1 [Cucumis melo var. makuwa] | [more] |
| TYK18303.1 | 3.44e-86 | 70.37 | TMV resistance protein N-like isoform X2 [Cucumis melo var. makuwa] | [more] |
| XP_008455159.1 | 3.91e-81 | 71.81 | PREDICTED: TMV resistance protein N-like isoform X2 [Cucumis melo] | [more] |
| XP_008455151.1 | 9.07e-81 | 71.81 | PREDICTED: TMV resistance protein N-like isoform X1 [Cucumis melo] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
