IVF0001476 (gene) Melon (IVF77) v1

Overview
NameIVF0001476
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Locationchr05: 20701751 .. 20701930 (-)
RNA-Seq ExpressionIVF0001476
SyntenyIVF0001476
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCACCTGACGACATCACTGGCACACGACCTGGTCATTCAAGTAAGGGCAGACTTAGTTCACGCGGCTCCAAAAGGAAGCGGGGAGGCCATACGACTGAGACTGTGGAAATCATTCGCACTACAATGGAATATGCAAATGACCAGTTAAAGGTCATTGGAGAATGGCCAAATTTATAA

mRNA sequence

ATGTCACCTGACGACATCACTGGCACACGACCTGGTCATTCAAGTAAGGGCAGACTTAGTTCACGCGGCTCCAAAAGGAAGCGGGGAGGCCATACGACTGAGACTGTGGAAATCATTCGCACTACAATGGAATATGCAAATGACCAGTTAAAGGTCATTGGAGAATGGCCAAATTTATAA

Coding sequence (CDS)

ATGTCACCTGACGACATCACTGGCACACGACCTGGTCATTCAAGTAAGGGCAGACTTAGTTCACGCGGCTCCAAAAGGAAGCGGGGAGGCCATACGACTGAGACTGTGGAAATCATTCGCACTACAATGGAATATGCAAATGACCAGTTAAAGGTCATTGGAGAATGGCCAAATTTATAA

Protein sequence

MSPDDITGTRPGHSSKGRLSSRGSKRKRGGHTTETVEIIRTTMEYANDQLKVIGEWPNL
Homology
BLAST of IVF0001476 vs. ExPASy TrEMBL
Match: A0A5D3BQB5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold29G00500 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 2.9e-19
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0

Query: 1   MSPDDITGTRPGHSSKGRLSSRGSKRKRGGHTTETVEIIRTTMEYANDQLK 52
           MSPDDITGTRPGHSSKGRLSSRGSKRKRGGHTTETVEIIRTTMEYANDQLK
Sbjct: 121 MSPDDITGTRPGHSSKGRLSSRGSKRKRGGHTTETVEIIRTTMEYANDQLK 171

BLAST of IVF0001476 vs. ExPASy TrEMBL
Match: A0A5A7UMR6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold222G00330 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 2.4e-18
Identity = 50/51 (98.04%), Postives = 50/51 (98.04%), Query Frame = 0

Query: 1   MSPDDITGTRPGHSSKGRLSSRGSKRKRGGHTTETVEIIRTTMEYANDQLK 52
           MSPDDITGTRPGHSSKGRLSSRGSKRKR GHTTETVEIIRTTMEYANDQLK
Sbjct: 57  MSPDDITGTRPGHSSKGRLSSRGSKRKREGHTTETVEIIRTTMEYANDQLK 107

BLAST of IVF0001476 vs. ExPASy TrEMBL
Match: A0A5A7UK94 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold314G00180 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 3.4e-12
Identity = 39/59 (66.10%), Postives = 46/59 (77.97%), Query Frame = 0

Query: 1   MSPDDITGTRPGHSSKGRLSSRGSKRKRGGHTTETVEIIRTTMEYANDQLKVIGEWPNL 60
           MS ++I GT+P  SSKG+ +S  SKRKRGGHT ETV IIR  ME+ANDQLK I EWPN+
Sbjct: 281 MSSNNIMGTQPSRSSKGKNASSKSKRKRGGHTAETVNIIRNEMEFANDQLKAIEEWPNV 339

BLAST of IVF0001476 vs. ExPASy TrEMBL
Match: A0A5A7T0C2 (RING-H2 finger protein ATL66 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001730 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 7.6e-12
Identity = 38/59 (64.41%), Postives = 44/59 (74.58%), Query Frame = 0

Query: 1  MSPDDITGTRPGHSSKGRLSSRGSKRKRGGHTTETVEIIRTTMEYANDQLKVIGEWPNL 60
          MSP++I GT+PG SS+G+ SS G KRKRGG   E  EIIR   EYANDQLK I EWPN+
Sbjct: 1  MSPNNIMGTQPGCSSEGKTSSNGLKRKRGGQAIEMAEIIRNAREYANDQLKTIAEWPNV 59

BLAST of IVF0001476 vs. ExPASy TrEMBL
Match: A0A5A7V3C0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold318G001020 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 4.9e-11
Identity = 37/59 (62.71%), Postives = 42/59 (71.19%), Query Frame = 0

Query: 1   MSPDDITGTRPGHSSKGRLSSRGSKRKRGGHTTETVEIIRTTMEYANDQLKVIGEWPNL 60
           M PDDI GTRP  SS+ R  S GSKRK+GG   E+VEIIR+ MEY N QLK I EW N+
Sbjct: 48  MLPDDIMGTRPSRSSEDRTGSSGSKRKQGGQMVESVEIIRSAMEYVNGQLKAIAEWSNM 106

BLAST of IVF0001476 vs. NCBI nr
Match: TYK01364.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 103 bits (257), Expect = 8.91e-26
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0

Query: 1   MSPDDITGTRPGHSSKGRLSSRGSKRKRGGHTTETVEIIRTTMEYANDQLK 51
           MSPDDITGTRPGHSSKGRLSSRGSKRKRGGHTTETVEIIRTTMEYANDQLK
Sbjct: 121 MSPDDITGTRPGHSSKGRLSSRGSKRKRGGHTTETVEIIRTTMEYANDQLK 171

BLAST of IVF0001476 vs. NCBI nr
Match: KAA0055556.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 100 bits (249), Expect = 2.80e-25
Identity = 50/51 (98.04%), Postives = 50/51 (98.04%), Query Frame = 0

Query: 1   MSPDDITGTRPGHSSKGRLSSRGSKRKRGGHTTETVEIIRTTMEYANDQLK 51
           MSPDDITGTRPGHSSKGRLSSRGSKRKR GHTTETVEIIRTTMEYANDQLK
Sbjct: 57  MSPDDITGTRPGHSSKGRLSSRGSKRKREGHTTETVEIIRTTMEYANDQLK 107

BLAST of IVF0001476 vs. NCBI nr
Match: KAA0036810.1 (RING-H2 finger protein ATL66 [Cucumis melo var. makuwa] >TYJ95878.1 RING-H2 finger protein ATL66 [Cucumis melo var. makuwa])

HSP 1 Score: 79.3 bits (194), Expect = 1.10e-17
Identity = 38/59 (64.41%), Postives = 44/59 (74.58%), Query Frame = 0

Query: 1  MSPDDITGTRPGHSSKGRLSSRGSKRKRGGHTTETVEIIRTTMEYANDQLKVIGEWPNL 59
          MSP++I GT+PG SS+G+ SS G KRKRGG   E  EIIR   EYANDQLK I EWPN+
Sbjct: 1  MSPNNIMGTQPGCSSEGKTSSNGLKRKRGGQAIEMAEIIRNAREYANDQLKTIAEWPNV 59

BLAST of IVF0001476 vs. NCBI nr
Match: KAA0055448.1 (uncharacterized protein E6C27_scaffold221G00180 [Cucumis melo var. makuwa] >TYK08930.1 uncharacterized protein E5676_scaffold314G00180 [Cucumis melo var. makuwa])

HSP 1 Score: 80.5 bits (197), Expect = 5.42e-16
Identity = 39/59 (66.10%), Postives = 46/59 (77.97%), Query Frame = 0

Query: 1   MSPDDITGTRPGHSSKGRLSSRGSKRKRGGHTTETVEIIRTTMEYANDQLKVIGEWPNL 59
           MS ++I GT+P  SSKG+ +S  SKRKRGGHT ETV IIR  ME+ANDQLK I EWPN+
Sbjct: 281 MSSNNIMGTQPSRSSKGKNASSKSKRKRGGHTAETVNIIRNEMEFANDQLKAIEEWPNV 339

BLAST of IVF0001476 vs. NCBI nr
Match: KAA0060365.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK22108.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 76.6 bits (187), Expect = 5.43e-16
Identity = 37/59 (62.71%), Postives = 42/59 (71.19%), Query Frame = 0

Query: 1   MSPDDITGTRPGHSSKGRLSSRGSKRKRGGHTTETVEIIRTTMEYANDQLKVIGEWPNL 59
           M PDDI GTRP  SS+ R  S GSKRK+GG   E+VEIIR+ MEY N QLK I EW N+
Sbjct: 48  MLPDDIMGTRPSRSSEDRTGSSGSKRKQGGQMVESVEIIRSAMEYVNGQLKAIAEWSNM 106

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BQB52.9e-19100.00Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7UMR62.4e-1898.04Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7UK943.4e-1266.10Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7T0C27.6e-1264.41RING-H2 finger protein ATL66 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca... [more]
A0A5A7V3C04.9e-1162.71Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
TYK01364.18.91e-26100.00retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0055556.12.80e-2598.04retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0036810.11.10e-1764.41RING-H2 finger protein ATL66 [Cucumis melo var. makuwa] >TYJ95878.1 RING-H2 fing... [more]
KAA0055448.15.42e-1666.10uncharacterized protein E6C27_scaffold221G00180 [Cucumis melo var. makuwa] >TYK0... [more]
KAA0060365.15.43e-1662.71retrotransposon protein [Cucumis melo var. makuwa] >TYK22108.1 retrotransposon p... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..34
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..18

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0001476.1IVF0001476.1mRNA