
IVF0001476 (gene) Melon (IVF77) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCACCTGACGACATCACTGGCACACGACCTGGTCATTCAAGTAAGGGCAGACTTAGTTCACGCGGCTCCAAAAGGAAGCGGGGAGGCCATACGACTGAGACTGTGGAAATCATTCGCACTACAATGGAATATGCAAATGACCAGTTAAAGGTCATTGGAGAATGGCCAAATTTATAA ATGTCACCTGACGACATCACTGGCACACGACCTGGTCATTCAAGTAAGGGCAGACTTAGTTCACGCGGCTCCAAAAGGAAGCGGGGAGGCCATACGACTGAGACTGTGGAAATCATTCGCACTACAATGGAATATGCAAATGACCAGTTAAAGGTCATTGGAGAATGGCCAAATTTATAA ATGTCACCTGACGACATCACTGGCACACGACCTGGTCATTCAAGTAAGGGCAGACTTAGTTCACGCGGCTCCAAAAGGAAGCGGGGAGGCCATACGACTGAGACTGTGGAAATCATTCGCACTACAATGGAATATGCAAATGACCAGTTAAAGGTCATTGGAGAATGGCCAAATTTATAA MSPDDITGTRPGHSSKGRLSSRGSKRKRGGHTTETVEIIRTTMEYANDQLKVIGEWPNL Homology
BLAST of IVF0001476 vs. ExPASy TrEMBL
Match: A0A5D3BQB5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold29G00500 PE=4 SV=1) HSP 1 Score: 103.6 bits (257), Expect = 2.9e-19 Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0
BLAST of IVF0001476 vs. ExPASy TrEMBL
Match: A0A5A7UMR6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold222G00330 PE=4 SV=1) HSP 1 Score: 100.5 bits (249), Expect = 2.4e-18 Identity = 50/51 (98.04%), Postives = 50/51 (98.04%), Query Frame = 0
BLAST of IVF0001476 vs. ExPASy TrEMBL
Match: A0A5A7UK94 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold314G00180 PE=4 SV=1) HSP 1 Score: 80.1 bits (196), Expect = 3.4e-12 Identity = 39/59 (66.10%), Postives = 46/59 (77.97%), Query Frame = 0
BLAST of IVF0001476 vs. ExPASy TrEMBL
Match: A0A5A7T0C2 (RING-H2 finger protein ATL66 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001730 PE=4 SV=1) HSP 1 Score: 79.0 bits (193), Expect = 7.6e-12 Identity = 38/59 (64.41%), Postives = 44/59 (74.58%), Query Frame = 0
BLAST of IVF0001476 vs. ExPASy TrEMBL
Match: A0A5A7V3C0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold318G001020 PE=4 SV=1) HSP 1 Score: 76.3 bits (186), Expect = 4.9e-11 Identity = 37/59 (62.71%), Postives = 42/59 (71.19%), Query Frame = 0
BLAST of IVF0001476 vs. NCBI nr
Match: TYK01364.1 (retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 103 bits (257), Expect = 8.91e-26 Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0
BLAST of IVF0001476 vs. NCBI nr
Match: KAA0055556.1 (retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 100 bits (249), Expect = 2.80e-25 Identity = 50/51 (98.04%), Postives = 50/51 (98.04%), Query Frame = 0
BLAST of IVF0001476 vs. NCBI nr
Match: KAA0036810.1 (RING-H2 finger protein ATL66 [Cucumis melo var. makuwa] >TYJ95878.1 RING-H2 finger protein ATL66 [Cucumis melo var. makuwa]) HSP 1 Score: 79.3 bits (194), Expect = 1.10e-17 Identity = 38/59 (64.41%), Postives = 44/59 (74.58%), Query Frame = 0
BLAST of IVF0001476 vs. NCBI nr
Match: KAA0055448.1 (uncharacterized protein E6C27_scaffold221G00180 [Cucumis melo var. makuwa] >TYK08930.1 uncharacterized protein E5676_scaffold314G00180 [Cucumis melo var. makuwa]) HSP 1 Score: 80.5 bits (197), Expect = 5.42e-16 Identity = 39/59 (66.10%), Postives = 46/59 (77.97%), Query Frame = 0
BLAST of IVF0001476 vs. NCBI nr
Match: KAA0060365.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK22108.1 retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 76.6 bits (187), Expect = 5.43e-16 Identity = 37/59 (62.71%), Postives = 42/59 (71.19%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
|