|
|
Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGCCAGCGTTCAACCGTCGTGGCTGCCCCATTTCCGATCTCCTTCCTGTCTCACACGCCGCAGATCTGCCGGCCGTCTCTGTCCCTACCGCAAGCCACGCTCCATGTCGACCGGTGCAGCCCAAAAGAAATCGCAGACAGTCGCCACCGCCGTGTGAGTTTTCGTCTGTCATTGTGCCACCCAAGACCAGCTCATCGTGTGTGCGCTGGGTGCTTCGAGCCGAAGGCTGA mRNA sequence ATGCCAGCGTTCAACCGTCGTGGCTGCCCCATTTCCGATCTCCTTCCTGTCTCACACGCCGCAGATCTGCCGGCCGTCTCTGTCCCTACCGCAAGCCACGCTCCATGTCGACCGGTGCAGCCCAAAAGAAATCGCAGACAGTCGCCACCGCCGTGTGAGTTTTCGTCTGTCATTGTGCCACCCAAGACCAGCTCATCGTGTGTGCGCTGGGTGCTTCGAGCCGAAGGCTGA Coding sequence (CDS) ATGCCAGCGTTCAACCGTCGTGGCTGCCCCATTTCCGATCTCCTTCCTGTCTCACACGCCGCAGATCTGCCGGCCGTCTCTGTCCCTACCGCAAGCCACGCTCCATGTCGACCGGTGCAGCCCAAAAGAAATCGCAGACAGTCGCCACCGCCGTGTGAGTTTTCGTCTGTCATTGTGCCACCCAAGACCAGCTCATCGTGTGTGCGCTGGGTGCTTCGAGCCGAAGGCTGA Protein sequence MPAFNRRGCPISDLLPVSHAADLPAVSVPTASHAPCRPVQPKRNRRQSPPPCEFSSVIVPPKTSSSCVRWVLRAEG
Homology
BLAST of IVF0001211 vs. ExPASy TrEMBL
Match: A0A5A7UC10 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G004470 PE=4 SV=1) HSP 1 Score: 67.0 bits (162), Expect = 3.8e-08 Identity = 36/49 (73.47%), Postives = 40/49 (81.63%), Query Frame = 0
Query: 17 VSHAA-DLPAVSVPTASHAPCRPVQPKRNRRQSPPPCEFSSVIVPPKTS 65
+SH+A DLP VSV TASHAPCRPVQ +RN RQS PCEFSSV+ P KTS
Sbjct: 1079 LSHSAVDLPTVSVFTASHAPCRPVQLERNCRQSLSPCEFSSVVTPAKTS 1127
BLAST of IVF0001211 vs. NCBI nr
Match: KAA0051967.1 (pol protein [Cucumis melo var. makuwa]) HSP 1 Score: 66.6 bits (161), Expect = 1.35e-10 Identity = 36/49 (73.47%), Postives = 40/49 (81.63%), Query Frame = 0
Query: 17 VSHAA-DLPAVSVPTASHAPCRPVQPKRNRRQSPPPCEFSSVIVPPKTS 64
+SH+A DLP VSV TASHAPCRPVQ +RN RQS PCEFSSV+ P KTS
Sbjct: 1079 LSHSAVDLPTVSVFTASHAPCRPVQLERNCRQSLSPCEFSSVVTPAKTS 1127
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7UC10 | 3.8e-08 | 73.47 | Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KAA0051967.1 | 1.35e-10 | 73.47 | pol protein [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 29..57 |
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| biological_process |
GO:0090305 |
nucleic acid phosphodiester bond hydrolysis |
| biological_process |
GO:0006508 |
proteolysis |
| biological_process |
GO:0006278 |
RNA-dependent DNA biosynthetic process |
| molecular_function |
GO:0004190 |
aspartic-type endopeptidase activity |
| molecular_function |
GO:0004519 |
endonuclease activity |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0003964 |
RNA-directed DNA polymerase activity |
|
