IVF0000343 (gene) Melon (IVF77) v1

Overview


Name	IVF0000343
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Protein LTV1-like protein
Location	chr12: 8561829 .. 8562363 (-)
RNA-Seq Expression	IVF0000343
Synteny	IVF0000343

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAATCTCGTGGGGAAGTTGGTGGAACGTCGTCACTGAAAAATGTAAGAAGAGAGATTTTGGAGCTTGAGTTCCCTGATGATGGTTACAATTATTTGTTGTATCTTCGGGTGATTAGGAATACTGGTAATGGTTCGACATCTTATCAGAACCCCAAGGCCAAGCTGAATCATGTTCCACTCGATGAAAAGGTTGGTTGTTTTATTTTGTTCAGAATACAGACTATTTTTGGCATTTGGGCTTTATTCATTATATGGATTGGATACATAAGTTAGCACATTCAGCATTATATTGTGGTTACCTATTTCTGAAATAAGCAACAGTTTGGGAAGCTTTTGTATTGCTCTGGATATGTTTTTTTCCCTTTCATACAATAGCGTTTCTTTGATTGTTTTGTAGGCTTATGACGCCTCCAGAATGATTGTTTCTAAAGTGAACTTTGATGCCAATGTGAATGTATACGAAGCTGCATCCAAGATTGTTGGAGTCAGGGTTCAAAATGTTGTTGATACATGTAATTATGGTGATAGCTAA

mRNA sequence

ATGCAATCTCGTGGGGAAGTTGGTGGAACGTCGTCACTGAAAAATGTAAGAAGAGAGATTTTGGAGCTTGAGTTCCCTGATGATGGTTACAATTATTTGTTGTATCTTCGGGTGATTAGGAATACTGGTAATGGTTCGACATCTTATCAGAACCCCAAGGCCAAGCTGAATCATGTTCCACTCGATGAAAAGGCTTATGACGCCTCCAGAATGATTGTTTCTAAAGTGAACTTTGATGCCAATGTGAATGTATACGAAGCTGCATCCAAGATTGTTGGAGTCAGGGTTCAAAATGTTGTTGATACATGTAATTATGGTGATAGCTAA

Coding sequence (CDS)

ATGCAATCTCGTGGGGAAGTTGGTGGAACGTCGTCACTGAAAAATGTAAGAAGAGAGATTTTGGAGCTTGAGTTCCCTGATGATGGTTACAATTATTTGTTGTATCTTCGGGTGATTAGGAATACTGGTAATGGTTCGACATCTTATCAGAACCCCAAGGCCAAGCTGAATCATGTTCCACTCGATGAAAAGGCTTATGACGCCTCCAGAATGATTGTTTCTAAAGTGAACTTTGATGCCAATGTGAATGTATACGAAGCTGCATCCAAGATTGTTGGAGTCAGGGTTCAAAATGTTGTTGATACATGTAATTATGGTGATAGCTAA

Protein sequence

MQSRGEVGGTSSLKNVRREILELEFPDDGYNYLLYLRVIRNTGNGSTSYQNPKAKLNHVPLDEKAYDASRMIVSKVNFDANVNVYEAASKIVGVRVQNVVDTCNYGDS

Homology

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BLAST of IVF0000343 vs. ExPASy TrEMBL
Match: A0A5A7SNI8 (Protein LTV1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold284G00010 PE=3 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 1.5e-53
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MQSRGEVGGTSSLKNVRREILELEFPDDGYNYLLYLRVIRNTGNGSTSYQNPKAKLNHVP 60
           MQSRGEVGGTSSLKNVRREILELEFPDDGYNYLLYLRVIRNTGNGSTSYQNPKAKLNHVP
Sbjct: 7   MQSRGEVGGTSSLKNVRREILELEFPDDGYNYLLYLRVIRNTGNGSTSYQNPKAKLNHVP 66

Query: 61  LDEKAYDASRMIVSKVNFDANVNVYEAASKIVGVRVQNVVDTCNYGDS 109
           LDEKAYDASRMIVSKVNFDANVNVYEAASKIVGVRVQNVVDTCNYGDS
Sbjct: 67  LDEKAYDASRMIVSKVNFDANVNVYEAASKIVGVRVQNVVDTCNYGDS 114

[Close]

BLAST of IVF0000343 vs. ExPASy TrEMBL
Match: A0A5A7V3C9 (Protein LTV1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold318G001120 PE=3 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 5.1e-46
Identity = 97/101 (96.04%), Postives = 98/101 (97.03%), Query Frame = 0


Query: 1   MQSRGEVGGTSSLKNVRREILELEFPDDGYNYLLYLRVIRNTGNGSTSYQNPKAKLNHVP 60
           MQSRGEVGGTSS +NVRREILELEFPDDGYNYLLYLRVIRNTGNGSTSYQNPKAKLNHVP
Sbjct: 1   MQSRGEVGGTSSPENVRREILELEFPDDGYNYLLYLRVIRNTGNGSTSYQNPKAKLNHVP 60

Query: 61  LDEKAYDASRMIVSKVNFDANVNVYEAASKIVGVRVQNVVD 102
           LDEKAYDASRMIVSKVNFDAN NVYEA SKIVGVRVQNVVD
Sbjct: 61  LDEKAYDASRMIVSKVNFDANENVYEAVSKIVGVRVQNVVD 101

[Close]

BLAST of IVF0000343 vs. ExPASy TrEMBL
Match: A0A5D3CI19 (Protein LTV1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G001180 PE=3 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 1.5e-37
Identity = 84/102 (82.35%), Postives = 92/102 (90.20%), Query Frame = 0


Query: 1   MQSRGEVGGTSSL-KNVRREILELEFPDDGYNYLLYLRVIRNTGNGSTSYQNPKAKLNHV 60
           MQSRGEVGGTSSL +NVRREILEL FPDDGYNYLL+LR I+NTG GST YQNPKAKLN V
Sbjct: 90  MQSRGEVGGTSSLPENVRREILELGFPDDGYNYLLHLREIKNTGGGSTFYQNPKAKLNQV 149

Query: 61  PLDEKAYDASRMIVSKVNFDANVNVYEAASKIVGVRVQNVVD 102
           P DEKAYDASRM+VSK+N DA+ NVY+ ASKIVG+RVQNVVD
Sbjct: 150 PRDEKAYDASRMVVSKMNVDADENVYKVASKIVGIRVQNVVD 191

[Close]

BLAST of IVF0000343 vs. ExPASy TrEMBL
Match: A0A1S3BKZ8 (protein LTV1 homolog OS=Cucumis melo OX=3656 GN=LOC103490738 PE=3 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 1.5e-37
Identity = 84/102 (82.35%), Postives = 92/102 (90.20%), Query Frame = 0


Query: 1   MQSRGEVGGTSSL-KNVRREILELEFPDDGYNYLLYLRVIRNTGNGSTSYQNPKAKLNHV 60
           MQSRGEVGGTSSL +NVRREILEL FPDDGYNYLL+LR I+NTG GST YQNPKAKLN V
Sbjct: 90  MQSRGEVGGTSSLPENVRREILELGFPDDGYNYLLHLREIKNTGGGSTFYQNPKAKLNQV 149

Query: 61  PLDEKAYDASRMIVSKVNFDANVNVYEAASKIVGVRVQNVVD 102
           P DEKAYDASRM+VSK+N DA+ NVY+ ASKIVG+RVQNVVD
Sbjct: 150 PRDEKAYDASRMVVSKMNVDADENVYKVASKIVGIRVQNVVD 191

[Close]

BLAST of IVF0000343 vs. ExPASy TrEMBL
Match: A0A0A0L517 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G006680 PE=3 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 6.9e-35
Identity = 80/102 (78.43%), Postives = 89/102 (87.25%), Query Frame = 0


Query: 1   MQSRGEVGGTSSL-KNVRREILELEFPDDGYNYLLYLRVIRNTGNGSTSYQNPKAKLNHV 60
           MQ  G+VGGTSSL +NVR++ILEL FPDDGYNYLL+LR I+NTG GST YQNPKAKLN V
Sbjct: 90  MQFSGDVGGTSSLPENVRKDILELGFPDDGYNYLLHLREIKNTGGGSTFYQNPKAKLNQV 149

Query: 61  PLDEKAYDASRMIVSKVNFDANVNVYEAASKIVGVRVQNVVD 102
           P DEKAYDASRMIVSK+N DA+ N Y+ ASKIVGVRVQNVVD
Sbjct: 150 PRDEKAYDASRMIVSKMNVDADENAYKVASKIVGVRVQNVVD 191

[Close]

BLAST of IVF0000343 vs. NCBI nr
Match: KAA0032612.1 (protein LTV1-like protein [Cucumis melo var. makuwa] >TYK20874.1 protein LTV1-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 217 bits (553), Expect = 4.27e-71
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MQSRGEVGGTSSLKNVRREILELEFPDDGYNYLLYLRVIRNTGNGSTSYQNPKAKLNHVP 60
           MQSRGEVGGTSSLKNVRREILELEFPDDGYNYLLYLRVIRNTGNGSTSYQNPKAKLNHVP
Sbjct: 7   MQSRGEVGGTSSLKNVRREILELEFPDDGYNYLLYLRVIRNTGNGSTSYQNPKAKLNHVP 66

Query: 61  LDEKAYDASRMIVSKVNFDANVNVYEAASKIVGVRVQNVVDTCNYGDS 108
           LDEKAYDASRMIVSKVNFDANVNVYEAASKIVGVRVQNVVDTCNYGDS
Sbjct: 67  LDEKAYDASRMIVSKVNFDANVNVYEAASKIVGVRVQNVVDTCNYGDS 114

[Close]

BLAST of IVF0000343 vs. NCBI nr
Match: KAA0060375.1 (protein LTV1-like protein [Cucumis melo var. makuwa] >TYK22115.1 protein LTV1-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 192 bits (489), Expect = 7.66e-61
Identity = 97/101 (96.04%), Postives = 98/101 (97.03%), Query Frame = 0


Query: 1   MQSRGEVGGTSSLKNVRREILELEFPDDGYNYLLYLRVIRNTGNGSTSYQNPKAKLNHVP 60
           MQSRGEVGGTSS +NVRREILELEFPDDGYNYLLYLRVIRNTGNGSTSYQNPKAKLNHVP
Sbjct: 1   MQSRGEVGGTSSPENVRREILELEFPDDGYNYLLYLRVIRNTGNGSTSYQNPKAKLNHVP 60

Query: 61  LDEKAYDASRMIVSKVNFDANVNVYEAASKIVGVRVQNVVD 101
           LDEKAYDASRMIVSKVNFDAN NVYEA SKIVGVRVQNVVD
Sbjct: 61  LDEKAYDASRMIVSKVNFDANENVYEAVSKIVGVRVQNVVD 101

[Close]

BLAST of IVF0000343 vs. NCBI nr
Match: XP_008448616.1 (PREDICTED: protein LTV1 homolog [Cucumis melo] >KAA0053005.1 protein LTV1-like protein [Cucumis melo var. makuwa] >TYK11461.1 protein LTV1-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 164 bits (416), Expect = 1.14e-45
Identity = 84/102 (82.35%), Postives = 92/102 (90.20%), Query Frame = 0


Query: 1   MQSRGEVGGTSSL-KNVRREILELEFPDDGYNYLLYLRVIRNTGNGSTSYQNPKAKLNHV 60
           MQSRGEVGGTSSL +NVRREILEL FPDDGYNYLL+LR I+NTG GST YQNPKAKLN V
Sbjct: 90  MQSRGEVGGTSSLPENVRREILELGFPDDGYNYLLHLREIKNTGGGSTFYQNPKAKLNQV 149

Query: 61  PLDEKAYDASRMIVSKVNFDANVNVYEAASKIVGVRVQNVVD 101
           P DEKAYDASRM+VSK+N DA+ NVY+ ASKIVG+RVQNVVD
Sbjct: 150 PRDEKAYDASRMVVSKMNVDADENVYKVASKIVGIRVQNVVD 191

[Close]

BLAST of IVF0000343 vs. NCBI nr
Match: XP_011650323.1 (protein LTV1 homolog [Cucumis sativus] >KGN55707.1 hypothetical protein Csa_009930 [Cucumis sativus])

HSP 1 Score: 155 bits (393), Expect = 2.45e-42
Identity = 80/102 (78.43%), Postives = 89/102 (87.25%), Query Frame = 0


Query: 1   MQSRGEVGGTSSL-KNVRREILELEFPDDGYNYLLYLRVIRNTGNGSTSYQNPKAKLNHV 60
           MQ  G+VGGTSSL +NVR++ILEL FPDDGYNYLL+LR I+NTG GST YQNPKAKLN V
Sbjct: 90  MQFSGDVGGTSSLPENVRKDILELGFPDDGYNYLLHLREIKNTGGGSTFYQNPKAKLNQV 149

Query: 61  PLDEKAYDASRMIVSKVNFDANVNVYEAASKIVGVRVQNVVD 101
           P DEKAYDASRMIVSK+N DA+ N Y+ ASKIVGVRVQNVVD
Sbjct: 150 PRDEKAYDASRMIVSKMNVDADENAYKVASKIVGVRVQNVVD 191

[Close]

BLAST of IVF0000343 vs. NCBI nr
Match: XP_038898842.1 (protein LTV1 homolog [Benincasa hispida])

HSP 1 Score: 147 bits (370), Expect = 5.05e-39
Identity = 76/102 (74.51%), Postives = 86/102 (84.31%), Query Frame = 0


Query: 1   MQSRGEVGGTSSL-KNVRREILELEFPDDGYNYLLYLRVIRNTGNGSTSYQNPKAKLNHV 60
           ++ R EVGGT+ L +NVRREILEL FPDDGYNYLL+LR I+NTG GS  YQNPKAKLN V
Sbjct: 90  LRLREEVGGTAPLPENVRREILELGFPDDGYNYLLHLREIKNTGGGSAFYQNPKAKLNQV 149

Query: 61  PLDEKAYDASRMIVSKVNFDANVNVYEAASKIVGVRVQNVVD 101
           P DEKAYDASR+IVSK N DA+ N+Y+ ASK VGVRVQNVVD
Sbjct: 150 PRDEKAYDASRVIVSKGNIDADGNIYKVASKTVGVRVQNVVD 191

[Close]

BLAST of IVF0000343 vs. TAIR 10
Match: AT3G49990.1 (unknown protein; Has 1524 Blast hits to 1298 proteins in 225 species: Archae - 9; Bacteria - 84; Metazoa - 474; Fungi - 184; Plants - 98; Viruses - 17; Other Eukaryotes - 658 (source: NCBI BLink). )

HSP 1 Score: 93.6 bits (231), Expect = 1.0e-19
Identity = 50/90 (55.56%), Postives = 64/90 (71.11%), Query Frame = 0


Query: 15  NVRREILELEFPDDGYNYLLYLRVIRNTGNGSTSYQNPKAKLNHVPLDEKAYDASRMIVS 74
           +VR+EILEL +PDDGYNYL +LR I+NTG GS  Y NPK ++  +P D KAYDASR+ +S
Sbjct: 88  HVRKEILELGYPDDGYNYLEHLREIKNTGGGSNFYVNPKYEVAQLPRDVKAYDASRVKIS 147

Query: 75  -KVNFDANVN--VYEAASKIVGVRVQNVVD 102
             VN + N N  +Y  ASK V V+VQ  +D
Sbjct: 148 GMVNEEGNDNKLMYSVASKTVNVKVQKAID 177

The following BLAST results are available for this feature:

BLAST of IVF0000343 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0000343 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SNI8	1.5e-53	100.00	Protein LTV1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A5A7V3C9	5.1e-46	96.04	Protein LTV1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A5D3CI19	1.5e-37	82.35	Protein LTV1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3BKZ8	1.5e-37	82.35	protein LTV1 homolog OS=Cucumis melo OX=3656 GN=LOC103490738 PE=3 SV=1	[more]
A0A0A0L517	6.9e-35	78.43	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G006680 PE=3 SV=1	[more]

BLAST of IVF0000343 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0032612.1	4.27e-71	100.00	protein LTV1-like protein [Cucumis melo var. makuwa] >TYK20874.1 protein LTV1-li...	[more]
KAA0060375.1	7.66e-61	96.04	protein LTV1-like protein [Cucumis melo var. makuwa] >TYK22115.1 protein LTV1-li...	[more]
XP_008448616.1	1.14e-45	82.35	PREDICTED: protein LTV1 homolog [Cucumis melo] >KAA0053005.1 protein LTV1-like p...	[more]
XP_011650323.1	2.45e-42	78.43	protein LTV1 homolog [Cucumis sativus] >KGN55707.1 hypothetical protein Csa_0099...	[more]
XP_038898842.1	5.05e-39	74.51	protein LTV1 homolog [Benincasa hispida]	[more]

BLAST of IVF0000343 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G49990.1	1.0e-19	55.56	unknown protein; Has 1524 Blast hits to 1298 proteins in 225 species: Archae - 9...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007307	Low temperature viability protein Ltv1	PANTHER	PTHR21531	LOW-TEMPERATURE VIABILITY PROTEIN LTV1-RELATED	coord: 14..101

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0000343.2	IVF0000343.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042274	ribosomal small subunit biogenesis
biological_process	GO:0000056	ribosomal small subunit export from nucleus
cellular_component	GO:0005829	cytosol
cellular_component	GO:0016020	membrane
cellular_component	GO:0005634	nucleus
cellular_component	GO:0030688	preribosome, small subunit precursor