IVF0000077 (gene) Melon (IVF77) v1

Overview


Name	IVF0000077
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	protein NIM1-INTERACTING 1-like
Location	chr05: 22459972 .. 22460671 (+)
RNA-Seq Expression	IVF0000077
Synteny	IVF0000077

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAAAATTGAATATTATGAGTAAGAGGTAACAAATTGCACTTTTTCTCTCTATTTTGTTCAATATCCAAATTTGTAGTATACCCCAAGATGATGAGGCTATACAAATACATAAAATAACATAAAGAAACCCAATTACTTTTTAATTCTTTCAGTAAAACTTTCCACATGTCTCTGCCAAAAACCTGTCTTCAACAGTTCTATGTGAATCATCTCTCTCTCTCTCCCTCTCTCTCTCGCTAATCCATTTCCACCGGCTATGGAAGGAGGAAGAAAAAGAAGAAAATTACAGAATAATGAGAAAGAAGAAGAGGTAGAAAATGAAGAAGAAGAAGAAGAAGAAGAGGTAGAAAATGAAGAAGAAGAGAAGAAGAAGAAGAAGAGAAAAAGATAGAATTGTTCTATGCTTTGATTCAAAACACAAAGGCCATGAGAGACAGAACGAAATATTCAAAAGAATTAACAGAAGAAGAGAAATTAAAAGGGGTTTGGAATCCGAAGTTTCAACCAGAAGATTTCATTGAAGAAGATGGTTATTACAATAGTAAATCCAACGTAACTCCTCTTCAACTATCAGCCGCTTCATCTTCAACAACAAAACAGAGCAATGAACAGAAACAACAACAAGAACAAGGTGAAGATGAAGATGAAGATAAGGTAGGAAAAGGGAAAAATGGGCTTGACCTTAATCTCTCTCTTTGA

mRNA sequence

GGAAAATTGAATATTATGAGTAAGAGGTAACAAATTGCACTTTTTCTCTCTATTTTGTTCAATATCCAAATTTGTAGTATACCCCAAGATGATGAGGCTATACAAATACATAAAATAACATAAAGAAACCCAATTACTTTTTAATTCTTTCAGTAAAACTTTCCACATGTCTCTGCCAAAAACCTGTCTTCAACAGTTCTATGTGAATCATCTCTCTCTCTCTCCCTCTCTCTCTCGCTAATCCATTTCCACCGGCTATGGAAGGAGGAAGAAAAAGAAGAAAATTACAGAATAATGAGAAAGAAGAAGAGGTAGAAAATGAAGAAGAAGAAGAAGAAGAAGAGAAAAAGATAGAATTGTTCTATGCTTTGATTCAAAACACAAAGGCCATGAGAGACAGAACGAAATATTCAAAAGAATTAACAGAAGAAGAGAAATTAAAAGGGGTTTGGAATCCGAAGTTTCAACCAGAAGATTTCATTGAAGAAGATGGTTATTACAATAGTAAATCCAACGTAACTCCTCTTCAACTATCAGCCGCTTCATCTTCAACAACAAAACAGAGCAATGAACAGAAACAACAACAAGAACAAGGTGAAGATGAAGATGAAGATAAGGTAGGAAAAGGGAAAAATGGGCTTGACCTTAATCTCTCTCTTTGA

Coding sequence (CDS)

ATGGAAGGAGGAAGAAAAAGAAGAAAATTACAGAATAATGAGAAAGAAGAAGAGGTAGAAAATGAAGAAGAAGAAGAAGAAGAAGAGAAAAAGATAGAATTGTTCTATGCTTTGATTCAAAACACAAAGGCCATGAGAGACAGAACGAAATATTCAAAAGAATTAACAGAAGAAGAGAAATTAAAAGGGGTTTGGAATCCGAAGTTTCAACCAGAAGATTTCATTGAAGAAGATGGTTATTACAATAGTAAATCCAACGTAACTCCTCTTCAACTATCAGCCGCTTCATCTTCAACAACAAAACAGAGCAATGAACAGAAACAACAACAAGAACAAGGTGAAGATGAAGATGAAGATAAGGTAGGAAAAGGGAAAAATGGGCTTGACCTTAATCTCTCTCTTTGA

Protein sequence

MEGGRKRRKLQNNEKEEEVENEEEEEEEEKKIELFYALIQNTKAMRDRTKYSKELTEEEKLKGVWNPKFQPEDFIEEDGYYNSKSNVTPLQLSAASSSTTKQSNEQKQQQEQGEDEDEDKVGKGKNGLDLNLSL

Homology

[Close]

BLAST of IVF0000077 vs. ExPASy TrEMBL
Match: A0A0A0LJ23 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G034770 PE=3 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 6.5e-35
Identity = 98/135 (72.59%), Postives = 107/135 (79.26%), Query Frame = 0


Query: 1   MEGGRKRRKLQNNEKEEEVENEEEEEEEEKKIELFYALIQNTKAMRDRTKYSKELTEEEK 60
           ME GRKRRKLQ          EEEEEEE++K+ELFYALIQNTKAMRD  KYSKELTEEEK
Sbjct: 1   MESGRKRRKLQ----------EEEEEEEDEKMELFYALIQNTKAMRDGMKYSKELTEEEK 60

Query: 61  LKGVWNPKFQPEDFIEEDGY-YNSKSNVTPLQLSAASSSTTKQSNEQKQQQEQGEDEDED 120
            KGVWNPKFQPEDF EEDGY YN+KSN+ PLQLSAASSSTTKQ NE+KQQ    E++   
Sbjct: 61  SKGVWNPKFQPEDFNEEDGYNYNNKSNIIPLQLSAASSSTTKQFNEKKQQ----EEDKHY 120

Query: 121 KVGKGKNGLDLNLSL 135
           KV + K GLDLNLSL
Sbjct: 121 KVVEVKKGLDLNLSL 121

[Close]

BLAST of IVF0000077 vs. ExPASy TrEMBL
Match: A0A6J1DQG7 (LOW QUALITY PROTEIN: uncharacterized protein LOC111023284 OS=Momordica charantia OX=3673 GN=LOC111023284 PE=3 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 1.2e-17
Identity = 71/134 (52.99%), Postives = 98/134 (73.13%), Query Frame = 0


Query: 1   MEGGRKRRKLQNNEKEEEVENEEEEEEEEKKIELFYALIQNTKAMRDRTKYSKELTEEEK 60
           ME  R++RKLQ++EKE     ++E+EEEE+K++LF+ALIQNTK++RDR K  +   +++K
Sbjct: 1   MESVRRKRKLQDDEKEA----QKEDEEEEEKMKLFFALIQNTKSIRDRVKSKQSAPQQDK 60

Query: 61  LKGVWNPKFQPEDFIEEDGYYNSKSNVTPLQLSAASSSTTKQSNEQKQQQEQGEDEDEDK 120
            KGVWNPKFQPEDFIE+    + KSN TP     A+SS+TKQ N+Q +++EQG+D+ E  
Sbjct: 61  SKGVWNPKFQPEDFIED---CDKKSNPTP---QFAASSSTKQRNKQ-EEEEQGKDKVE-- 118

Query: 121 VGKGKNGLDLNLSL 135
              G   LDLNLSL
Sbjct: 121 ---GIEDLDLNLSL 118

[Close]

BLAST of IVF0000077 vs. ExPASy TrEMBL
Match: A0A061F4Z3 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_026807 PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 8.6e-11
Identity = 62/146 (42.47%), Postives = 88/146 (60.27%), Query Frame = 0


Query: 1   MEGGRKRRKLQNNEKEEEVENEEE---EEEEEKKIELFYALIQNTKAMRDRTK------- 60
           ME GRK+RK+ N E+EE+ E EEE   EEEEE+K+E F+ALI++T+ MRDR +       
Sbjct: 1   MESGRKKRKMGNQEEEEDDEEEEEEDDEEEEEEKVEKFFALIRSTREMRDRLRNVPNGSK 60

Query: 61  --YSKELTEEEKLKGVWNPKFQPEDFIEEDGYYNSKSNVTPLQLSAASSSTTKQSNEQKQ 120
               ++  EE+++  VWNPKFQPEDF+E+    +   N+  +  +  SS+         +
Sbjct: 61  EEEERKKQEEKQVAAVWNPKFQPEDFMED----SKPKNLLAVNEAGPSSN---------R 120

Query: 121 QQEQGEDEDEDKVGKGKNGLDLNLSL 135
           +QEQG+D  E   G    GLDL LSL
Sbjct: 121 EQEQGQDTKE---GGEDGGLDLKLSL 130

[Close]

BLAST of IVF0000077 vs. ExPASy TrEMBL
Match: A0A5C7GWM2 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_024772 PE=3 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.9e-10
Identity = 65/166 (39.16%), Postives = 91/166 (54.82%), Query Frame = 0


Query: 5   RKRRKLQNNEKEEEVENEEEEEEEEKKIELFYALIQNTKAMRDRTKYS------------ 64
           RK+RK++N       E EEEEE EE+K+E FYAL++NTK +RDR + S            
Sbjct: 9   RKKRKMEN-------EEEEEEENEEEKMEQFYALLRNTKDVRDRLRSSSTSSTGLHGSPI 68

Query: 65  -------------------KELTEEEKLKGVWNPKFQPEDFIEEDGYYNSKSNVTPLQLS 124
                              K+  EE+ L  VWNP FQPEDF+ ED    +KSN   L  +
Sbjct: 69  PSIPSMEINNNNNKQDQEKKKQLEEKALSAVWNPSFQPEDFM-EDRNVIAKSNTVNLGST 128

Query: 125 AA---SSSTTKQSNEQKQQQEQGEDEDEDKVGKGKN--GLDLNLSL 135
           ++   ++S +++ NE+ QQQ+Q E++D+   GK  N   LDLNLSL
Sbjct: 129 SSTQLAASASQEKNEEPQQQQQQEEDDKKDGGKDNNNLALDLNLSL 166

[Close]

BLAST of IVF0000077 vs. ExPASy TrEMBL
Match: A0A6P9EP42 (protein NIM1-INTERACTING 1-like OS=Juglans regia OX=51240 GN=LOC108987715 PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.6e-09
Identity = 60/147 (40.82%), Postives = 86/147 (58.50%), Query Frame = 0


Query: 1   MEGGRKRRKLQNNEKEEEVENEEEEEEEEKKIELFYALIQNTKAMRDRTKYSKELTE--- 60
           MEG RK+RK+  +E     E E++E++EEKKI+ F+ LI++T+ +RDR + S    E   
Sbjct: 1   MEGERKKRKILESE-----EGEDDEDDEEKKIQKFFDLIRSTREVRDRLRSSTGFNESKD 60

Query: 61  --------EEKLKG--VWNPKFQPEDFIEEDGYYNSKSNVTPLQLSAASSSTTKQSNEQK 120
                   E+++KG  VWNP FQPEDFI++D   +SKS          S   T+Q    K
Sbjct: 61  QKEEKTRVEKEIKGITVWNPTFQPEDFIQDD--KSSKS---------TSPGATQQPGPSK 120

Query: 121 QQQEQGEDEDEDKVGKGKNGLDLNLSL 135
              +  E+ED+D+   G +GLDLNLSL
Sbjct: 121 STTKGNEEEDQDRSEDGNHGLDLNLSL 131

[Close]

BLAST of IVF0000077 vs. NCBI nr
Match: KGN61024.1 (hypothetical protein Csa_021295 [Cucumis sativus])

HSP 1 Score: 155 bits (393), Expect = 3.70e-46
Identity = 98/135 (72.59%), Postives = 107/135 (79.26%), Query Frame = 0


Query: 1   MEGGRKRRKLQNNEKEEEVENEEEEEEEEKKIELFYALIQNTKAMRDRTKYSKELTEEEK 60
           ME GRKRRKLQ          EEEEEEE++K+ELFYALIQNTKAMRD  KYSKELTEEEK
Sbjct: 1   MESGRKRRKLQ----------EEEEEEEDEKMELFYALIQNTKAMRDGMKYSKELTEEEK 60

Query: 61  LKGVWNPKFQPEDFIEEDGY-YNSKSNVTPLQLSAASSSTTKQSNEQKQQQEQGEDEDED 120
            KGVWNPKFQPEDF EEDGY YN+KSN+ PLQLSAASSSTTKQ NE+KQQ+E    +   
Sbjct: 61  SKGVWNPKFQPEDFNEEDGYNYNNKSNIIPLQLSAASSSTTKQFNEKKQQEE----DKHY 120

Query: 121 KVGKGKNGLDLNLSL 134
           KV + K GLDLNLSL
Sbjct: 121 KVVEVKKGLDLNLSL 121

[Close]

BLAST of IVF0000077 vs. NCBI nr
Match: KAG6599168.1 (hypothetical protein SDJN03_08946, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 118 bits (296), Expect = 3.56e-31
Identity = 79/141 (56.03%), Postives = 106/141 (75.18%), Query Frame = 0


Query: 1   MEGGRKRRKLQNNEKEE--EVENEEEEEEEEKKIELFYALIQNTKAMRDRTKYSKELTEE 60
           MEGGRKRRKLQN E+++  E E+E+E+E+EE+K++LF+ALIQNTKAMRD+ K  +   E+
Sbjct: 1   MEGGRKRRKLQNIEEDDDDEEEDEDEDEDEEEKMKLFFALIQNTKAMRDKIKSKESAEED 60

Query: 61  EKLKGVWNPKFQPEDFIEEDGYYNSKS-NVTPLQLSAASSSTTKQSNEQKQQQEQGE--- 120
              KGVWNPKFQPEDFIE DG+   KS +   ++L AASSS TKQSN++++ QE  E   
Sbjct: 61  NPTKGVWNPKFQPEDFIE-DGFDTHKSKSKAAIELGAASSSATKQSNQKEEHQEHQEHQE 120

Query: 121 -DEDEDKVGKGKNGLDLNLSL 134
             E ++++ + K GLDLNLSL
Sbjct: 121 HQEHQEQLEEPKKGLDLNLSL 140

[Close]

BLAST of IVF0000077 vs. NCBI nr
Match: XP_038889660.1 (protein NIM1-INTERACTING 3 isoform X1 [Benincasa hispida])

HSP 1 Score: 116 bits (291), Expect = 9.54e-31
Identity = 80/122 (65.57%), Postives = 94/122 (77.05%), Query Frame = 0


Query: 1   MEGGRKRRKLQNNEKEEEVENEEEEEEEEKKIELFYALIQNTKAMRDRTKYSKELTEEEK 60
           ME GRKRRKL+        E EEE+++EE +++L +ALIQN KAMR R K SKE  EEEK
Sbjct: 1   MERGRKRRKLE--------EEEEEDDDEEGEMKLVFALIQNIKAMRGRMK-SKESPEEEK 60

Query: 61  LKGVWNPKFQPEDFIEEDGYYNSKSNVTPLQLSAASSSTTKQSNEQKQQQEQGEDEDEDK 120
            KGVWNPKFQPEDFIE DGYYN+KSN+T LQL AASSSTTK SN +K+QQEQ   +D+ K
Sbjct: 61  SKGVWNPKFQPEDFIE-DGYYNNKSNIT-LQLPAASSSTTKHSNPKKEQQEQ---QDKHK 108

Query: 121 VG 122
           VG
Sbjct: 121 VG 108

[Close]

BLAST of IVF0000077 vs. NCBI nr
Match: XP_038889662.1 (protein NIM1-INTERACTING 3 isoform X3 [Benincasa hispida])

HSP 1 Score: 114 bits (286), Expect = 4.87e-30
Identity = 76/112 (67.86%), Postives = 88/112 (78.57%), Query Frame = 0


Query: 1   MEGGRKRRKLQNNEKEEEVENEEEEEEEEKKIELFYALIQNTKAMRDRTKYSKELTEEEK 60
           ME GRKRRKL+        E EEE+++EE +++L +ALIQN KAMR R K SKE  EEEK
Sbjct: 1   MERGRKRRKLE--------EEEEEDDDEEGEMKLVFALIQNIKAMRGRMK-SKESPEEEK 60

Query: 61  LKGVWNPKFQPEDFIEEDGYYNSKSNVTPLQLSAASSSTTKQSNEQKQQQEQ 112
            KGVWNPKFQPEDFIE DGYYN+KSN+T LQL AASSSTTK SN +K+QQEQ
Sbjct: 61  SKGVWNPKFQPEDFIE-DGYYNNKSNIT-LQLPAASSSTTKHSNPKKEQQEQ 101

[Close]

BLAST of IVF0000077 vs. NCBI nr
Match: XP_038889661.1 (protein NIM1-INTERACTING 3 isoform X2 [Benincasa hispida])

HSP 1 Score: 114 bits (286), Expect = 5.16e-30
Identity = 76/112 (67.86%), Postives = 88/112 (78.57%), Query Frame = 0


Query: 1   MEGGRKRRKLQNNEKEEEVENEEEEEEEEKKIELFYALIQNTKAMRDRTKYSKELTEEEK 60
           ME GRKRRKL+        E EEE+++EE +++L +ALIQN KAMR R K SKE  EEEK
Sbjct: 1   MERGRKRRKLE--------EEEEEDDDEEGEMKLVFALIQNIKAMRGRMK-SKESPEEEK 60

Query: 61  LKGVWNPKFQPEDFIEEDGYYNSKSNVTPLQLSAASSSTTKQSNEQKQQQEQ 112
            KGVWNPKFQPEDFIE DGYYN+KSN+T LQL AASSSTTK SN +K+QQEQ
Sbjct: 61  SKGVWNPKFQPEDFIE-DGYYNNKSNIT-LQLPAASSSTTKHSNPKKEQQEQ 101

The following BLAST results are available for this feature:

BLAST of IVF0000077 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0000077 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJ23	6.5e-35	72.59	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G034770 PE=3 SV=1	[more]
A0A6J1DQG7	1.2e-17	52.99	LOW QUALITY PROTEIN: uncharacterized protein LOC111023284 OS=Momordica charantia...	[more]
A0A061F4Z3	8.6e-11	42.47	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_026807 PE=3 SV=1	[more]
A0A5C7GWM2	1.9e-10	39.16	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_024772 PE=3 SV=1	[more]
A0A6P9EP42	1.6e-09	40.82	protein NIM1-INTERACTING 1-like OS=Juglans regia OX=51240 GN=LOC108987715 PE=3 S...	[more]

BLAST of IVF0000077 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN61024.1	3.70e-46	72.59	hypothetical protein Csa_021295 [Cucumis sativus]	[more]
KAG6599168.1	3.56e-31	56.03	hypothetical protein SDJN03_08946, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_038889660.1	9.54e-31	65.57	protein NIM1-INTERACTING 3 isoform X1 [Benincasa hispida]	[more]
XP_038889662.1	4.87e-30	67.86	protein NIM1-INTERACTING 3 isoform X3 [Benincasa hispida]	[more]
XP_038889661.1	5.16e-30	67.86	protein NIM1-INTERACTING 3 isoform X2 [Benincasa hispida]	[more]

BLAST of IVF0000077 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 5..34
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 108..125
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..134
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..16
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 81..107
None	No IPR available	PANTHER	PTHR33669:SF4	PROTEIN NIM1-INTERACTING 3	coord: 4..134
IPR031425	NPR1/NH1-interacting protein	PFAM	PF15699	NPR1_interact	coord: 24..131 e-value: 5.9E-20 score: 71.9
IPR031425	NPR1/NH1-interacting protein	PANTHER	PTHR33669	PROTEIN NEGATIVE REGULATOR OF RESISTANCE	coord: 4..134

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0000077.1	IVF0000077.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010112	regulation of systemic acquired resistance
cellular_component	GO:0005634	nucleus