HG10023344 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10023344
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Pyridoxal 5'-phosphate synthase subunit PdxS
Location	Chr05: 33247350 .. 33247825 (-)
RNA-Seq Expression	HG10023344
Synteny	HG10023344

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCAGAATTTTATCGATAAGCACTAAGTTTAAGGAGTCGTATTTCGTCTGTGGATGTGGAAGCCTAGGCGAGGCGTTGAGGAGAATAAAGGAAGGTGCGGCAATGGTGAAGACTCGAGGGGATATGACGTCTTCTTCAGGTAACATTGCGGAGGCGTTGCGTAACGTGAGGTCTGTGATGGCAGAGATTAGATATTTACATAACATGAATGACGATGAGGTTTTCGCTTTCTCGCAAAAGATCGCTGCGCCTTATGATATTGTCAAGCAAATTTCCAGACTGCCGGAGGCATTGCGACTCCTGCGGATGCGGCTTTGATGATGCAGTTAGGTTGTGATGGCATCTTTCTGGAATTGGAGATATTCGACTGCCCTAATCCTCGCGACCGATTAAGGGGAATGATTATAGCGGTGAGGAATTACAACGATCCCCACGTTCTGGCGCAGGCTAGTTTTGGATTTGGCGCCGCATGA

mRNA sequence

ATGACCAGAATTTTATCGATAAGCACTAAGTTTAAGGAGTCGTATTTCGTCTGTGGATGTGGAAGCCTAGGCGAGGCGTTGAGGAGAATAAAGGAAGGTGCGGCAATGGTGAAGACTCGAGGGGATATGACGTCTTCTTCAGGTAACATTGCGGAGGCGTTGCGTAACGTGAGGTCTGTGATGGCAGAGATTAGATATTTACATAACATGAATGACGATGAGACTGCCGGAGGCATTGCGACTCCTGCGGATGCGGCTTTGATGATGCAGTTAGGTTGTGATGGCATCTTTCTGGAATTGGAGATATTCGACTGCCCTAATCCTCGCGACCGATTAAGGGGAATGATTATAGCGGTGAGGAATTACAACGATCCCCACGTTCTGGCGCAGGCTAGTTTTGGATTTGGCGCCGCATGA

Coding sequence (CDS)

ATGACCAGAATTTTATCGATAAGCACTAAGTTTAAGGAGTCGTATTTCGTCTGTGGATGTGGAAGCCTAGGCGAGGCGTTGAGGAGAATAAAGGAAGGTGCGGCAATGGTGAAGACTCGAGGGGATATGACGTCTTCTTCAGGTAACATTGCGGAGGCGTTGCGTAACGTGAGGTCTGTGATGGCAGAGATTAGATATTTACATAACATGAATGACGATGAGACTGCCGGAGGCATTGCGACTCCTGCGGATGCGGCTTTGATGATGCAGTTAGGTTGTGATGGCATCTTTCTGGAATTGGAGATATTCGACTGCCCTAATCCTCGCGACCGATTAAGGGGAATGATTATAGCGGTGAGGAATTACAACGATCCCCACGTTCTGGCGCAGGCTAGTTTTGGATTTGGCGCCGCATGA

Protein sequence

MTRILSISTKFKESYFVCGCGSLGEALRRIKEGAAMVKTRGDMTSSSGNIAEALRNVRSVMAEIRYLHNMNDDETAGGIATPADAALMMQLGCDGIFLELEIFDCPNPRDRLRGMIIAVRNYNDPHVLAQASFGFGAA

Homology

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BLAST of HG10023344 vs. NCBI nr
Match: XP_038897062.1 (pyridoxal 5'-phosphate synthase-like subunit PDX1.2 isoform X1 [Benincasa hispida])

HSP 1 Score: 210.3 bits (534), Expect = 1.1e-50
Identity = 111/158 (70.25%), Postives = 117/158 (74.05%), Query Frame = 0


Query: 10  KFKESYFVCGCGSLGEALRRIKEGAAMVKTRGDMTSSSGNIAEALRNVRSVMAEIRYLHN 69
           KFK+SYFVCGC +LGEALRRIKEGAAMVKT+GDM+SSSGNIAE LRNVRSVM EIRYLHN
Sbjct: 131 KFKDSYFVCGCRNLGEALRRIKEGAAMVKTQGDMSSSSGNIAETLRNVRSVMGEIRYLHN 190

Query: 70  MNDDE-----------------------------TAGGIATPADAALMMQLGCDGIFLEL 129
           MNDDE                              AGGI TPADAALMMQLGCDGIFL  
Sbjct: 191 MNDDEVFAFSKKIAAPYDLVKETKELGRLPAIHYAAGGIVTPADAALMMQLGCDGIFLGS 250

Query: 130 EIFDCPNPRDRLRGMIIAVRNYNDPHVLAQASFGFGAA 139
           EIFD PN RDRLRGMI AVRNYN+P VLA+ SFGFGAA
Sbjct: 251 EIFDYPNHRDRLRGMIKAVRNYNNPEVLAEVSFGFGAA 288

[Close]

BLAST of HG10023344 vs. NCBI nr
Match: XP_038897063.1 (pyridoxal 5'-phosphate synthase-like subunit PDX1.2 isoform X2 [Benincasa hispida])

HSP 1 Score: 196.8 bits (499), Expect = 1.2e-46
Identity = 104/150 (69.33%), Postives = 110/150 (73.33%), Query Frame = 0


Query: 10  KFKESYFVCGCGSLGEALRRIKEGAAMVKTRGDMTSSSGNIAEALRNVRSVMAEIRYLHN 69
           KFK+SYFVCGC +LGEALRRIKEGAAMVKT+GDM+SSSGNIAE LRNVRSVM EIRYLHN
Sbjct: 131 KFKDSYFVCGCRNLGEALRRIKEGAAMVKTQGDMSSSSGNIAETLRNVRSVMGEIRYLHN 190

Query: 70  MNDDE-----------------------------TAGGIATPADAALMMQLGCDGIFLEL 129
           MNDDE                              AGGI TPADAALMMQLGCDGIFL  
Sbjct: 191 MNDDEVFAFSKKIAAPYDLVKETKELGRLPAIHYAAGGIVTPADAALMMQLGCDGIFLGS 250

Query: 130 EIFDCPNPRDRLRGMIIAVRNYNDPHVLAQ 131
           EIFD PN RDRLRGMI AVRNYN+P VLA+
Sbjct: 251 EIFDYPNHRDRLRGMIKAVRNYNNPEVLAE 280

[Close]

BLAST of HG10023344 vs. NCBI nr
Match: XP_022145699.1 (pyridoxal 5'-phosphate synthase-like subunit PDX1.2 [Momordica charantia])

HSP 1 Score: 189.1 bits (479), Expect = 2.5e-44
Identity = 97/158 (61.39%), Postives = 113/158 (71.52%), Query Frame = 0


Query: 11  FKESYFVCGCGSLGEALRRIKEGAAMVKTRGDMTSSS-GNIAEALRNVRSVMAEIRYLHN 70
           F E+YFVCGC SLGEALRR+KEGA MVKT+G + +S+ G+I E  RNVRSVM EIR LHN
Sbjct: 133 FPETYFVCGCRSLGEALRRVKEGATMVKTQGGVAASALGDIVETTRNVRSVMGEIRQLHN 192

Query: 71  MNDDE-----------------------------TAGGIATPADAALMMQLGCDGIFLEL 130
           M+DDE                              AGGI+TPADA LMMQLGCDGIF+ L
Sbjct: 193 MDDDEVFAFAEKIAAPYDLVKETRQICRLPAIHYAAGGISTPADAGLMMQLGCDGIFIGL 252

Query: 131 EIFDCPNPRDRLRGMIIAVRNYNDPHVLAQASFGFGAA 139
           EIFDC NPRDRLR M++AV+NYNDP++LA+ASFGFGAA
Sbjct: 253 EIFDCANPRDRLRRMVLAVKNYNDPNILAEASFGFGAA 290

[Close]

BLAST of HG10023344 vs. NCBI nr
Match: XP_004141845.1 (pyridoxal 5'-phosphate synthase-like subunit PDX1.2 [Cucumis sativus] >KGN45369.1 hypothetical protein Csa_016165 [Cucumis sativus])

HSP 1 Score: 187.6 bits (475), Expect = 7.3e-44
Identity = 98/158 (62.03%), Postives = 114/158 (72.15%), Query Frame = 0


Query: 10  KFKESYFVCGCGSLGEALRRIKEGAAMVKTRGDMTSSSGNIAEALRNVRSVMAEIRYLHN 69
           KFK+S+FVCGC SLGEALRRIKEGA MVKT+G M+S +G+I E LRNVRSVM++IRYLHN
Sbjct: 131 KFKDSHFVCGCRSLGEALRRIKEGAIMVKTQGGMSSITGHITETLRNVRSVMSDIRYLHN 190

Query: 70  MNDDE-----------------------------TAGGIATPADAALMMQLGCDGIFLEL 129
           M+++E                              AGGI TPADAALMMQLGCDGIFL L
Sbjct: 191 MDENEVFAYSREIAAPYDLVKETRELGRLPAIHYAAGGIVTPADAALMMQLGCDGIFLGL 250

Query: 130 EIFDCPNPRDRLRGMIIAVRNYNDPHVLAQASFGFGAA 139
           EIF+ PNPRDRLR MI AVRN++DP  LA+A+FGFG A
Sbjct: 251 EIFEYPNPRDRLRRMIEAVRNHSDPEALARAAFGFGPA 288

[Close]

BLAST of HG10023344 vs. NCBI nr
Match: KAA0059296.1 (pyridoxal 5'-phosphate synthase-like subunit PDX1.2 [Cucumis melo var. makuwa] >TYK04032.1 pyridoxal 5'-phosphate synthase-like subunit PDX1.2 [Cucumis melo var. makuwa])

HSP 1 Score: 186.0 bits (471), Expect = 2.1e-43
Identity = 97/153 (63.40%), Postives = 110/153 (71.90%), Query Frame = 0


Query: 10  KFKESYFVCGCGSLGEALRRIKEGAAMVKTRGDMTSSSGNIAEALRNVRSVMAEIRYLHN 69
           KFK+SYFVCG  SLGEALRRIKEGAA+VKT G+M SSSGNI+E LRNVR+VM+EIRYLHN
Sbjct: 131 KFKDSYFVCGSRSLGEALRRIKEGAAIVKTLGNMGSSSGNISETLRNVRAVMSEIRYLHN 190

Query: 70  MNDDE-----------------------------TAGGIATPADAALMMQLGCDGIFLEL 129
           M++DE                              AGGI TPADAALMMQLGCDGIFL L
Sbjct: 191 MDEDEVFAYSQKIDAPYDLVKETRELGRLPGIYYAAGGIVTPADAALMMQLGCDGIFLAL 250

Query: 130 EIFDCPNPRDRLRGMIIAVRNYNDPHVLAQASF 134
           EIF+CPNPRDRLR M+ AVRN+ +P  L +ASF
Sbjct: 251 EIFECPNPRDRLRRMVEAVRNHRNPEALVRASF 283

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BLAST of HG10023344 vs. ExPASy Swiss-Prot
Match: Q9ZNR6 (Pyridoxal 5'-phosphate synthase-like subunit PDX1.2 OS=Arabidopsis thaliana OX=3702 GN=PDX12 PE=1 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 2.2e-35
Identity = 76/150 (50.67%), Postives = 101/150 (67.33%), Query Frame = 0


Query: 14  SYFVCGCGSLGEALRRIKEGAAMVKTRGDMTSSSGNIAEALRNVRSVMAEIRYLHNMNDD 73
           S F+CGC   GEALRRI+EGAAM++ +GD+T ++GNIAE ++NVRS+M E+R L+NM+DD
Sbjct: 143 SPFICGCRDTGEALRRIREGAAMIRIQGDLT-ATGNIAETVKNVRSLMGEVRVLNNMDDD 202

Query: 74  E-----------------------------TAGGIATPADAALMMQLGCDGIFLELEIFD 133
           E                              +GGI TPADAALMMQLGCDG+F+  E+FD
Sbjct: 203 EVFTFAKKISAPYDLVAQTKQMGRVPVVQFASGGITTPADAALMMQLGCDGVFVGSEVFD 262

Query: 134 CPNPRDRLRGMIIAVRNYNDPHVLAQASFG 135
            P+P  +LR ++ AV++YNDPHVLA+ S G
Sbjct: 263 GPDPFKKLRSIVQAVQHYNDPHVLAEMSSG 291

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BLAST of HG10023344 vs. ExPASy Swiss-Prot
Match: Q39963 (Probable pyridoxal 5'-phosphate synthase subunit PDX1 OS=Hevea brasiliensis OX=3981 GN=PDX1 PE=2 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 6.7e-32
Identity = 73/152 (48.03%), Postives = 97/152 (63.82%), Query Frame = 0


Query: 16  FVCGCGSLGEALRRIKEGAAMVKTRGDMTSSSGNIAEALRNVRSVMAEIRYLHNMNDDE- 75
           FVCGC +LGEALRRI+EGAAM++T+G+  + +GN+ EA+R+VRSVM +IR L NM+DDE 
Sbjct: 141 FVCGCRNLGEALRRIREGAAMIRTKGE--AGTGNVIEAVRHVRSVMGDIRLLRNMDDDEV 200

Query: 76  ----------------------------TAGGIATPADAALMMQLGCDGIFLELEIFDCP 135
                                        AGG+ATPADAALMMQLGCDG+F+   +F   
Sbjct: 201 FTFAKKIAAPYDLVMQTKQLGRLPVVQFAAGGVATPADAALMMQLGCDGVFVGSGVFKSG 260

Query: 136 NPRDRLRGMIIAVRNYNDPHVLAQASFGFGAA 139
           +P  R R ++ AV +Y+DP +LA+ S G G A
Sbjct: 261 DPARRARAIVQAVTHYSDPDMLAEVSCGLGEA 290

[Close]

BLAST of HG10023344 vs. ExPASy Swiss-Prot
Match: Q9AT63 (Probable pyridoxal 5'-phosphate synthase subunit PDX1 OS=Ginkgo biloba OX=3311 GN=PDX1 PE=2 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 2.5e-31
Identity = 71/152 (46.71%), Postives = 96/152 (63.16%), Query Frame = 0


Query: 16  FVCGCGSLGEALRRIKEGAAMVKTRGDMTSSSGNIAEALRNVRSVMAEIRYLHNMNDDE- 75
           FVCGC +LGEALRRI EGAAM++T+G+  + +GN+ EA+R+VRSV+ +IR L +++DDE 
Sbjct: 141 FVCGCRNLGEALRRIAEGAAMIRTKGE--AGTGNVIEAVRHVRSVLGDIRKLQSLDDDEV 200

Query: 76  ----------------------------TAGGIATPADAALMMQLGCDGIFLELEIFDCP 135
                                        AGG+ATPADAALMMQLGCDG+F+   +F   
Sbjct: 201 FAFAKQIAAPYELVRQTKQLGRLPVVNFAAGGVATPADAALMMQLGCDGVFVGSGVFKSG 260

Query: 136 NPRDRLRGMIIAVRNYNDPHVLAQASFGFGAA 139
           +P  R R ++ AV +YNDPH+LA+ S   G A
Sbjct: 261 DPARRARAIVQAVTHYNDPHILAEVSCSLGEA 290

[Close]

BLAST of HG10023344 vs. ExPASy Swiss-Prot
Match: B8G663 (Pyridoxal 5'-phosphate synthase subunit PdxS OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) OX=326427 GN=pdxS PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 3.1e-29
Identity = 71/152 (46.71%), Postives = 93/152 (61.18%), Query Frame = 0


Query: 16  FVCGCGSLGEALRRIKEGAAMVKTRGDMTSSSGNIAEALRNVRSVMAEIRYLHNMNDDE- 75
           FVCGC +LGEALRRI EGAAM++T+G+  + +GN+ EA+R+ R+V +EIR L +MN+DE 
Sbjct: 124 FVCGCRNLGEALRRIAEGAAMLRTKGE--AGTGNVVEAVRHARAVYSEIRRLQSMNEDEL 183

Query: 76  ----------------------------TAGGIATPADAALMMQLGCDGIFLELEIFDCP 135
                                        AGGIATPADAAL+MQLG DGIF+   IF   
Sbjct: 184 FTYAKQIQAPYELVKQVATEGKLPVVNFAAGGIATPADAALLMQLGVDGIFVGSGIFKSG 243

Query: 136 NPRDRLRGMIIAVRNYNDPHVLAQASFGFGAA 139
           NP  R R ++ A  +YNDP ++A+ S G G A
Sbjct: 244 NPIKRARAIVEATTHYNDPEIIAEVSKGLGEA 273

[Close]

BLAST of HG10023344 vs. ExPASy Swiss-Prot
Match: A9WFT9 (Pyridoxal 5'-phosphate synthase subunit PdxS OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) OX=324602 GN=pdxS PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.5e-28
Identity = 69/152 (45.39%), Postives = 93/152 (61.18%), Query Frame = 0


Query: 16  FVCGCGSLGEALRRIKEGAAMVKTRGDMTSSSGNIAEALRNVRSVMAEIRYLHNMNDDE- 75
           FVCGC +LGEALRR+ EGAAM++T+G+  + +GN+ EA+R+ R+V +EIR L +MN+DE 
Sbjct: 124 FVCGCRNLGEALRRVAEGAAMLRTKGE--AGTGNVVEAVRHARAVYSEIRRLQSMNEDEL 183

Query: 76  ----------------------------TAGGIATPADAALMMQLGCDGIFLELEIFDCP 135
                                        AGGIATPADAAL+MQLG DGIF+   IF   
Sbjct: 184 FTYAKQIQAPYELVKQVATEGKLPVVNFAAGGIATPADAALLMQLGVDGIFVGSGIFKSG 243

Query: 136 NPRDRLRGMIIAVRNYNDPHVLAQASFGFGAA 139
           +P  R R ++ A  +YNDP ++A+ S G G A
Sbjct: 244 DPVKRARAIVEATTHYNDPEIIAEVSKGLGEA 273

[Close]

BLAST of HG10023344 vs. ExPASy TrEMBL
Match: A0A6J1CW07 (pyridoxal 5'-phosphate synthase-like subunit PDX1.2 OS=Momordica charantia OX=3673 GN=LOC111015088 PE=3 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 1.2e-44
Identity = 97/158 (61.39%), Postives = 113/158 (71.52%), Query Frame = 0


Query: 11  FKESYFVCGCGSLGEALRRIKEGAAMVKTRGDMTSSS-GNIAEALRNVRSVMAEIRYLHN 70
           F E+YFVCGC SLGEALRR+KEGA MVKT+G + +S+ G+I E  RNVRSVM EIR LHN
Sbjct: 133 FPETYFVCGCRSLGEALRRVKEGATMVKTQGGVAASALGDIVETTRNVRSVMGEIRQLHN 192

Query: 71  MNDDE-----------------------------TAGGIATPADAALMMQLGCDGIFLEL 130
           M+DDE                              AGGI+TPADA LMMQLGCDGIF+ L
Sbjct: 193 MDDDEVFAFAEKIAAPYDLVKETRQICRLPAIHYAAGGISTPADAGLMMQLGCDGIFIGL 252

Query: 131 EIFDCPNPRDRLRGMIIAVRNYNDPHVLAQASFGFGAA 139
           EIFDC NPRDRLR M++AV+NYNDP++LA+ASFGFGAA
Sbjct: 253 EIFDCANPRDRLRRMVLAVKNYNDPNILAEASFGFGAA 290

[Close]

BLAST of HG10023344 vs. ExPASy TrEMBL
Match: A0A0A0K936 (SOR_SNZ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G446840 PE=3 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 3.5e-44
Identity = 98/158 (62.03%), Postives = 114/158 (72.15%), Query Frame = 0


Query: 10  KFKESYFVCGCGSLGEALRRIKEGAAMVKTRGDMTSSSGNIAEALRNVRSVMAEIRYLHN 69
           KFK+S+FVCGC SLGEALRRIKEGA MVKT+G M+S +G+I E LRNVRSVM++IRYLHN
Sbjct: 131 KFKDSHFVCGCRSLGEALRRIKEGAIMVKTQGGMSSITGHITETLRNVRSVMSDIRYLHN 190

Query: 70  MNDDE-----------------------------TAGGIATPADAALMMQLGCDGIFLEL 129
           M+++E                              AGGI TPADAALMMQLGCDGIFL L
Sbjct: 191 MDENEVFAYSREIAAPYDLVKETRELGRLPAIHYAAGGIVTPADAALMMQLGCDGIFLGL 250

Query: 130 EIFDCPNPRDRLRGMIIAVRNYNDPHVLAQASFGFGAA 139
           EIF+ PNPRDRLR MI AVRN++DP  LA+A+FGFG A
Sbjct: 251 EIFEYPNPRDRLRRMIEAVRNHSDPEALARAAFGFGPA 288

[Close]

BLAST of HG10023344 vs. ExPASy TrEMBL
Match: A0A5D3BYT2 (Pyridoxal 5'-phosphate synthase-like subunit PDX1.2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G002310 PE=3 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 1.0e-43
Identity = 97/153 (63.40%), Postives = 110/153 (71.90%), Query Frame = 0


Query: 10  KFKESYFVCGCGSLGEALRRIKEGAAMVKTRGDMTSSSGNIAEALRNVRSVMAEIRYLHN 69
           KFK+SYFVCG  SLGEALRRIKEGAA+VKT G+M SSSGNI+E LRNVR+VM+EIRYLHN
Sbjct: 131 KFKDSYFVCGSRSLGEALRRIKEGAAIVKTLGNMGSSSGNISETLRNVRAVMSEIRYLHN 190

Query: 70  MNDDE-----------------------------TAGGIATPADAALMMQLGCDGIFLEL 129
           M++DE                              AGGI TPADAALMMQLGCDGIFL L
Sbjct: 191 MDEDEVFAYSQKIDAPYDLVKETRELGRLPGIYYAAGGIVTPADAALMMQLGCDGIFLAL 250

Query: 130 EIFDCPNPRDRLRGMIIAVRNYNDPHVLAQASF 134
           EIF+CPNPRDRLR M+ AVRN+ +P  L +ASF
Sbjct: 251 EIFECPNPRDRLRRMVEAVRNHRNPEALVRASF 283

[Close]

BLAST of HG10023344 vs. ExPASy TrEMBL
Match: A0A1S3CH05 (pyridoxal 5'-phosphate synthase-like subunit PDX1.2 OS=Cucumis melo OX=3656 GN=LOC103500799 PE=3 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 1.3e-43
Identity = 97/153 (63.40%), Postives = 110/153 (71.90%), Query Frame = 0


Query: 10  KFKESYFVCGCGSLGEALRRIKEGAAMVKTRGDMTSSSGNIAEALRNVRSVMAEIRYLHN 69
           KFK+SYFVCG  SLGEALRRIKEGAA+VKT G+M SSSGNI+E LRNVR+VM+EIRYLHN
Sbjct: 131 KFKDSYFVCGSRSLGEALRRIKEGAAIVKTLGNMGSSSGNISETLRNVRAVMSEIRYLHN 190

Query: 70  MNDDE-----------------------------TAGGIATPADAALMMQLGCDGIFLEL 129
           M++DE                              AGGI TPADAALMMQLGCDGIFL L
Sbjct: 191 MDEDEVFAYSQKIGAPYDLVKETRELGRLPAIYYAAGGIVTPADAALMMQLGCDGIFLGL 250

Query: 130 EIFDCPNPRDRLRGMIIAVRNYNDPHVLAQASF 134
           EIF+CPNPRDRLR M+ AVRN+ +P  L +ASF
Sbjct: 251 EIFECPNPRDRLRRMVEAVRNHRNPEALVRASF 283

[Close]

BLAST of HG10023344 vs. ExPASy TrEMBL
Match: A0A6J1KI63 (pyridoxal 5'-phosphate synthase-like subunit PDX1.2 OS=Cucurbita maxima OX=3661 GN=LOC111494636 PE=3 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 6.7e-43
Identity = 98/159 (61.64%), Postives = 110/159 (69.18%), Query Frame = 0


Query: 10  KFKESYFVCGCGSLGEALRRIKEGAAMVKTRGDMT--SSSGNIAEALRNVRSVMAEIRYL 69
           +FKESYFVCGC SLGEALRR+KEGA M+KT+GDM   SS  NI E LRNVRSVMA+IR+L
Sbjct: 126 RFKESYFVCGCRSLGEALRRVKEGAKMIKTQGDMAAYSSGNNITETLRNVRSVMADIRFL 185

Query: 70  HNMNDDE-----------------------------TAGGIATPADAALMMQLGCDGIFL 129
           H+MN+DE                              AGGIATPADAALMMQLGCDGIF+
Sbjct: 186 HSMNEDEVFAFSQKISAPYDIVKKTKEIGRLPAINYAAGGIATPADAALMMQLGCDGIFV 245

Query: 130 ELEIFDCPNPRDRLRGMIIAVRNYNDPHVLAQASFGFGA 138
            LEIF    P DRLRG++ AV+ YNDP VLAQASFG GA
Sbjct: 246 GLEIFQFSKPCDRLRGIVQAVKGYNDPSVLAQASFGVGA 284

[Close]

BLAST of HG10023344 vs. TAIR 10
Match: AT3G16050.1 (pyridoxine biosynthesis 1.2 )

HSP 1 Score: 149.8 bits (377), Expect = 1.6e-36
Identity = 76/150 (50.67%), Postives = 101/150 (67.33%), Query Frame = 0


Query: 14  SYFVCGCGSLGEALRRIKEGAAMVKTRGDMTSSSGNIAEALRNVRSVMAEIRYLHNMNDD 73
           S F+CGC   GEALRRI+EGAAM++ +GD+T ++GNIAE ++NVRS+M E+R L+NM+DD
Sbjct: 143 SPFICGCRDTGEALRRIREGAAMIRIQGDLT-ATGNIAETVKNVRSLMGEVRVLNNMDDD 202

Query: 74  E-----------------------------TAGGIATPADAALMMQLGCDGIFLELEIFD 133
           E                              +GGI TPADAALMMQLGCDG+F+  E+FD
Sbjct: 203 EVFTFAKKISAPYDLVAQTKQMGRVPVVQFASGGITTPADAALMMQLGCDGVFVGSEVFD 262

Query: 134 CPNPRDRLRGMIIAVRNYNDPHVLAQASFG 135
            P+P  +LR ++ AV++YNDPHVLA+ S G
Sbjct: 263 GPDPFKKLRSIVQAVQHYNDPHVLAEMSSG 291

[Close]

BLAST of HG10023344 vs. TAIR 10
Match: AT5G01410.1 (Aldolase-type TIM barrel family protein )

HSP 1 Score: 135.2 bits (339), Expect = 4.0e-32
Identity = 73/152 (48.03%), Postives = 95/152 (62.50%), Query Frame = 0


Query: 16  FVCGCGSLGEALRRIKEGAAMVKTRGDMTSSSGNIAEALRNVRSVMAEIRYLHNMNDDE- 75
           FVCGC +LGEALRRI+EGAAM++T+G+  + +GNI EA+R+VRSV  +IR L NM+DDE 
Sbjct: 141 FVCGCRNLGEALRRIREGAAMIRTKGE--AGTGNIIEAVRHVRSVNGDIRVLRNMDDDEV 200

Query: 76  ----------------------------TAGGIATPADAALMMQLGCDGIFLELEIFDCP 135
                                        AGG+ATPADAALMMQLGCDG+F+   IF   
Sbjct: 201 FTFAKKLAAPYDLVMQTKQLGRLPVVQFAAGGVATPADAALMMQLGCDGVFVGSGIFKSG 260

Query: 136 NPRDRLRGMIIAVRNYNDPHVLAQASFGFGAA 139
           +P  R R ++ AV +Y+DP +L + S G G A
Sbjct: 261 DPARRARAIVQAVTHYSDPEMLVEVSCGLGEA 290

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BLAST of HG10023344 vs. TAIR 10
Match: AT2G38230.1 (pyridoxine biosynthesis 1.1 )

HSP 1 Score: 130.6 bits (327), Expect = 9.9e-31
Identity = 71/152 (46.71%), Postives = 93/152 (61.18%), Query Frame = 0


Query: 16  FVCGCGSLGEALRRIKEGAAMVKTRGDMTSSSGNIAEALRNVRSVMAEIRYLHNMNDDE- 75
           FVCGC +LGEALRRI+EGAAM++T+G+  + +GN+ EA+R+VRSV   IR L +M+DDE 
Sbjct: 142 FVCGCRNLGEALRRIREGAAMIRTKGE--AGTGNVVEAVRHVRSVNGAIRLLRSMDDDEV 201

Query: 76  ----------------------------TAGGIATPADAALMMQLGCDGIFLELEIFDCP 135
                                        AGG+ATPADAALMMQLGCDG+F+   +F   
Sbjct: 202 FTYAKKIAAPYDLVVQTKELGRLPVVQFAAGGVATPADAALMMQLGCDGVFVGSGVFKSG 261

Query: 136 NPRDRLRGMIIAVRNYNDPHVLAQASFGFGAA 139
           +P  R + ++ AV NY D  VLA+ S G G A
Sbjct: 262 DPVKRAKAIVQAVTNYRDAAVLAEVSCGLGEA 291

The following BLAST results are available for this feature:

BLAST of HG10023344 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038897062.1	1.1e-50	70.25	pyridoxal 5'-phosphate synthase-like subunit PDX1.2 isoform X1 [Benincasa hispid...	[more]
XP_038897063.1	1.2e-46	69.33	pyridoxal 5'-phosphate synthase-like subunit PDX1.2 isoform X2 [Benincasa hispid...	[more]
XP_022145699.1	2.5e-44	61.39	pyridoxal 5'-phosphate synthase-like subunit PDX1.2 [Momordica charantia]	[more]
XP_004141845.1	7.3e-44	62.03	pyridoxal 5'-phosphate synthase-like subunit PDX1.2 [Cucumis sativus] >KGN45369....	[more]
KAA0059296.1	2.1e-43	63.40	pyridoxal 5'-phosphate synthase-like subunit PDX1.2 [Cucumis melo var. makuwa] >...	[more]

BLAST of HG10023344 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZNR6	2.2e-35	50.67	Pyridoxal 5'-phosphate synthase-like subunit PDX1.2 OS=Arabidopsis thaliana OX=3...	[more]
Q39963	6.7e-32	48.03	Probable pyridoxal 5'-phosphate synthase subunit PDX1 OS=Hevea brasiliensis OX=3...	[more]
Q9AT63	2.5e-31	46.71	Probable pyridoxal 5'-phosphate synthase subunit PDX1 OS=Ginkgo biloba OX=3311 G...	[more]
B8G663	3.1e-29	46.71	Pyridoxal 5'-phosphate synthase subunit PdxS OS=Chloroflexus aggregans (strain M...	[more]
A9WFT9	1.5e-28	45.39	Pyridoxal 5'-phosphate synthase subunit PdxS OS=Chloroflexus aurantiacus (strain...	[more]

BLAST of HG10023344 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CW07	1.2e-44	61.39	pyridoxal 5'-phosphate synthase-like subunit PDX1.2 OS=Momordica charantia OX=36...	[more]
A0A0A0K936	3.5e-44	62.03	SOR_SNZ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G446840 PE=...	[more]
A0A5D3BYT2	1.0e-43	63.40	Pyridoxal 5'-phosphate synthase-like subunit PDX1.2 OS=Cucumis melo var. makuwa ...	[more]
A0A1S3CH05	1.3e-43	63.40	pyridoxal 5'-phosphate synthase-like subunit PDX1.2 OS=Cucumis melo OX=3656 GN=L...	[more]
A0A6J1KI63	6.7e-43	61.64	pyridoxal 5'-phosphate synthase-like subunit PDX1.2 OS=Cucurbita maxima OX=3661 ...	[more]

BLAST of HG10023344 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G16050.1	1.6e-36	50.67	pyridoxine biosynthesis 1.2	[more]
AT5G01410.1	4.0e-32	48.03	Aldolase-type TIM barrel family protein	[more]
AT2G38230.1	9.9e-31	46.71	pyridoxine biosynthesis 1.1	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR033755	PdxS/SNZ N-terminal domain	PFAM	PF01680	SOR_SNZ	coord: 14..76 e-value: 5.2E-20 score: 72.1
IPR013785	Aldolase-type TIM barrel	GENE3D	3.20.20.70	Aldolase class I	coord: 76..138 e-value: 6.3E-22 score: 80.2
IPR013785	Aldolase-type TIM barrel	GENE3D	3.20.20.70	Aldolase class I	coord: 4..75 e-value: 1.5E-18 score: 69.1
IPR001852	Pyridoxal 5'-phosphate synthase subunit PdxS/SNZ	PANTHER	PTHR31829	PYRIDOXAL 5'-PHOSPHATE SYNTHASE SUBUNIT SNZ1-RELATED	coord: 13..74 coord: 76..136
IPR001852	Pyridoxal 5'-phosphate synthase subunit PdxS/SNZ	PROSITE	PS51129	PDXS_SNZ_2	coord: 16..138 score: 25.317078
None	No IPR available	PANTHER	PTHR31829:SF2	PYRIDOXAL 5'-PHOSPHATE SYNTHASE-LIKE SUBUNIT PDX1.2	coord: 13..74 coord: 76..136
None	No IPR available	SUPERFAMILY	110399	ThiG-like	coord: 15..130

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10023344.1	HG10023344.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006520	cellular amino acid metabolic process
biological_process	GO:0042823	pyridoxal phosphate biosynthetic process
biological_process	GO:0008615	pyridoxine biosynthetic process
biological_process	GO:0042819	vitamin B6 biosynthetic process
molecular_function	GO:0016843	amine-lyase activity
molecular_function	GO:0003824	catalytic activity