HG10023324 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10023324
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Unknown protein
Location	Chr05: 33064196 .. 33065580 (-)
RNA-Seq Expression	HG10023324
Synteny	HG10023324

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGACATTGGTGTTGTTCATAGAAGTAGACGGGTTCAAGCAAGAATGCAGGCATCTCGACGGGCAGTCGGAGAAGGAGATCCCAGGCGTGACGGTGCATACGACGAAGCAGGAGCTGTAACAATCTTGAAAAGGTTCGGAATTGGTCATGGAGAGCGAGCTCAGCACCAAACAAGCCATTAAAGCCCATTTCATTATTGCCATACATTGGTTCAATTTGATTTGGTTGAATTAGTAATATTATTGATTTTCAAGAGGGGTACGTACATTGGTTCATTTTTAAACTAAATAAATTAAAGAATTTAGACATTTAGACAATTTTTTAAGTGAAAAATAGAATTAGACATTTTAAGAAAAATCTTTTTAATTTAAACCTTTGTCCCGTATGTTTGTTCAACGAAATTAAATGCAAGTAGTTATTTGATTTTCTATTACGAAAAATTGCACAAATCATTTCTGAACTTTTAATTTGATCAACCACATAACTTTGTGGTTTGTTACAATTAAACTCATAAACTCTTCTAATTTGATTAATTAGTCCCGGAGTTTGTTAATTGTCGTAATTAGAGCCCGGAAGTTTGACTTCATTTAGCAGATGCGGATCATCAATTCATGGAACATGTTTGAGAGCAAGAATCCACACAGCTCCCCACTTCTTTCTCAGCTGCCATCAACAAAACCAAAGAAAACATCACACGTGAACCAAGCAATACTTTTTCATAAATAAATAATTATTAAAAAAATCGTCTAAACTTTTTTATACTCGTAATATTCCAAATAAAAATGTTAAGAAAAGCAAATTAGGGGAAAATACTTTTAGACATTATTTTTAGGTAAATTTTAGATAGATTAAAATGTTAAAATATTTACGGAAAATATAAAAAAGACACATAATATTAATAAACTTCTCATAGACTTTTATCATTTCTATCAACAACTATCTAAAACTTTAGAAATTCCTTATCTCACGATTAAAAATAAGAAAATATAGAAGAAAATCGTTTTGATTTCAATTTCTAAATTTAGTACTAAGATTTGAAAACAAACAAAATGAAAATAACACTCAAAACCTAGCATCAGAAAAAATATATCAAATAAGGGAGTGGAGATTTGGAACCTGGATTTTCCTTTGTGCTAAACTTGGTACACAAGGAAGTTGCACAGCCAAGCTTGCAGAAGAAGTGATTTTGTTGTGGCGACTGATCATGGAGCCTGGCGTTGTAATGAGACGGGGACATGCAAGTATGCAGGCATCTCGACGGGCAGTCGAAGAAGGAGACACCGGGCGTGATGGCGCATGTGATGAAGCAGGAATGGTAGCAATCGAAAAAATCGTAGGAATTGGCCATGGAGAGCGAGCAGAGCAGCAGCCAACCCATTAA

mRNA sequence

ATGGACGACATTGGTGTTGTTCATAGAAGTAGACGGGTTCAAGCAAGAATGCAGGCATCTCGACGGGCAGTCGGAGAAGGAGATCCCAGGCGTGACGGTGCATACGACGAAGCAGGAGCTGTAACAATCTTGAAAAGGGAGTGGAGATTTGGAACCTGGATTTTCCTTTGTGCTAAACTTGGTACACAAGGAAGTTGCACAGCCAAGCTTGCAGAAGAAGTGATTTTGTTGTGGCGACTGATCATGGAGCCTGGCGTTGTAATGAGACGGGGACATGCAAGTATGCAGGCATCTCGACGGGCAGTCGAAGAAGGAGACACCGGGCGTGATGGCGCATGTGATGAAGCAGGAATGGTAGCAATCGAAAAAATCGTAGGAATTGGCCATGGAGAGCGAGCAGAGCAGCAGCCAACCCATTAA

Coding sequence (CDS)

ATGGACGACATTGGTGTTGTTCATAGAAGTAGACGGGTTCAAGCAAGAATGCAGGCATCTCGACGGGCAGTCGGAGAAGGAGATCCCAGGCGTGACGGTGCATACGACGAAGCAGGAGCTGTAACAATCTTGAAAAGGGAGTGGAGATTTGGAACCTGGATTTTCCTTTGTGCTAAACTTGGTACACAAGGAAGTTGCACAGCCAAGCTTGCAGAAGAAGTGATTTTGTTGTGGCGACTGATCATGGAGCCTGGCGTTGTAATGAGACGGGGACATGCAAGTATGCAGGCATCTCGACGGGCAGTCGAAGAAGGAGACACCGGGCGTGATGGCGCATGTGATGAAGCAGGAATGGTAGCAATCGAAAAAATCGTAGGAATTGGCCATGGAGAGCGAGCAGAGCAGCAGCCAACCCATTAA

Protein sequence

MDDIGVVHRSRRVQARMQASRRAVGEGDPRRDGAYDEAGAVTILKREWRFGTWIFLCAKLGTQGSCTAKLAEEVILLWRLIMEPGVVMRRGHASMQASRRAVEEGDTGRDGACDEAGMVAIEKIVGIGHGERAEQQPTH

Homology

[Close]

BLAST of HG10023324 vs. NCBI nr
Match: KAG6575554.1 (hypothetical protein SDJN03_26193, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 68.2 bits (165), Expect = 6.5e-08
Identity = 41/81 (50.62%), Postives = 56/81 (69.14%), Query Frame = 0


Query: 51  GTWIFLCAKLGTQGSCTAKLAEEVILLW--RLIMEPGVVMRR--GHASMQASRRAVEEGD 110
           GTW+ + A+LGT+G   A+LAEE++LL    +++  GVV R+   +A ++AS+ AV EGD
Sbjct: 72  GTWVLVGAELGTRGGGAAELAEELVLLLPVEVVVGGGVVDRKRWDNAGLEASQWAVGEGD 131

Query: 111 TGRDGACDEAGMVAIEKIVGI 128
            GRDGA DEAG VA  K  GI
Sbjct: 132 AGRDGAYDEAGGVAFLKRGGI 152

[Close]

BLAST of HG10023324 vs. NCBI nr
Match: KAA0058807.1 (hypothetical protein E6C27_scaffold339G002820 [Cucumis melo var. makuwa] >TYK10602.1 hypothetical protein E5676_scaffold459G002590 [Cucumis melo var. makuwa])

HSP 1 Score: 66.6 bits (161), Expect = 1.9e-07
Identity = 35/51 (68.63%), Postives = 39/51 (76.47%), Query Frame = 0


Query: 89  RRGHASMQASRRAVEEGDTGRDGACDEAGMVAIEKIVGIGHGERAEQQPTH 140
           RR  AS+QAS+RAV EGD GRDGA DEAG VA  K  GIG GER +QQP+H
Sbjct: 11  RRDDASLQASQRAVGEGDAGRDGAYDEAGGVAFLKRGGIGGGERGQQQPSH 61

[Close]

BLAST of HG10023324 vs. ExPASy TrEMBL
Match: A0A0A0K910 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G441630 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 3.7e-17
Identity = 56/93 (60.22%), Postives = 65/93 (69.89%), Query Frame = 0


Query: 49  RFGTWIFLCAKLGTQGSCTAKLAEEVILLWRLIMEPGVV--MRRGHASMQASRRAVEEGD 108
           RF TWI  CAKL T GSCTAKLAEE+ILL   + + G+V   RR  AS+QAS+ AV EG+
Sbjct: 4   RFQTWILFCAKLSTGGSCTAKLAEEMILLLLPMDDIGIVNRKRRDDASLQASQWAVGEGN 63

Query: 109 TGRDGACDEAGMVAIEKIVGIGHGERAEQQPTH 140
            G DGA DEAG VA  K  GI  GER +QQP+H
Sbjct: 64  AGCDGAYDEAGGVAFLKRGGISGGERGQQQPSH 96

[Close]

BLAST of HG10023324 vs. ExPASy TrEMBL
Match: A0A5A7UVT9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G002590 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 9.2e-08
Identity = 35/51 (68.63%), Postives = 39/51 (76.47%), Query Frame = 0


Query: 89  RRGHASMQASRRAVEEGDTGRDGACDEAGMVAIEKIVGIGHGERAEQQPTH 140
           RR  AS+QAS+RAV EGD GRDGA DEAG VA  K  GIG GER +QQP+H
Sbjct: 11  RRDDASLQASQRAVGEGDAGRDGAYDEAGGVAFLKRGGIGGGERGQQQPSH 61

The following BLAST results are available for this feature:

BLAST of HG10023324 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6575554.1	6.5e-08	50.62	hypothetical protein SDJN03_26193, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0058807.1	1.9e-07	68.63	hypothetical protein E6C27_scaffold339G002820 [Cucumis melo var. makuwa] >TYK106...	[more]

BLAST of HG10023324 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10023324 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K910	3.7e-17	60.22	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G441630 PE=4 SV=1	[more]
A0A5A7UVT9	9.2e-08	68.63	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of HG10023324 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10023324.1	HG10023324.1	mRNA