HG10023174 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10023174
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	RING-type E3 ubiquitin transferase
Location	Chr05: 31883443 .. 31883730 (-)
RNA-Seq Expression	HG10023174
Synteny	HG10023174

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGATGATGGTGGAGATTAGCCATTTGGAAGGAATGCTAGGAATGCAAGCGACTGCTGCCGTGTTTATCCTCGTGCAGATTCTAGTTTATCTAATCCTCTCTAAATCTTCTCAAGTCTTCTCTAAGAATGCGAACAGGTCTCTCAGTTTTCGACAGGTCCGATCTCTGAGTATTCGTCGGATTATTGAAGCTCTCTCTGACTTTCCCTCTAGCACCGGTGGCGAGGCGTCTCCTTCTCTAAGTCGTGGAGAATGTGAAATGACATTCGATGAAGACAGTTCTTGA

mRNA sequence

ATGATGATGATGGTGGAGATTAGCCATTTGGAAGGAATGCTAGGAATGCAAGCGACTGCTGCCGTGTTTATCCTCGTGCAGATTCTAGTTTATCTAATCCTCTCTAAATCTTCTCAAGTCTTCTCTAAGAATGCGAACAGGTCTCTCAGTTTTCGACAGGTCCGATCTCTGAGTATTCGTCGGATTATTGAAGCTCTCTCTGACTTTCCCTCTAGCACCGGTGGCGAGGCGTCTCCTTCTCTAAGTCGTGGAGAATGTGAAATGACATTCGATGAAGACAGTTCTTGA

Coding sequence (CDS)

ATGATGATGATGGTGGAGATTAGCCATTTGGAAGGAATGCTAGGAATGCAAGCGACTGCTGCCGTGTTTATCCTCGTGCAGATTCTAGTTTATCTAATCCTCTCTAAATCTTCTCAAGTCTTCTCTAAGAATGCGAACAGGTCTCTCAGTTTTCGACAGGTCCGATCTCTGAGTATTCGTCGGATTATTGAAGCTCTCTCTGACTTTCCCTCTAGCACCGGTGGCGAGGCGTCTCCTTCTCTAAGTCGTGGAGAATGTGAAATGACATTCGATGAAGACAGTTCTTGA

Protein sequence

MMMMVEISHLEGMLGMQATAAVFILVQILVYLILSKSSQVFSKNANRSLSFRQVRSLSIRRIIEALSDFPSSTGGEASPSLSRGECEMTFDEDSS

Homology

[Close]

BLAST of HG10023174 vs. NCBI nr
Match: XP_022954080.1 (uncharacterized protein LOC111456452 [Cucurbita moschata])

HSP 1 Score: 112.8 bits (281), Expect = 1.6e-21
Identity = 69/93 (74.19%), Postives = 72/93 (77.42%), Query Frame = 0


Query: 3  MMVEISHLEGMLGMQATAAVFILVQILVYLILSKSSQVFSKNANRSLSFRQVRSLSIRRI 62
          MM+EI HLE   GM  TAAVF+LVQILVYLILSKSS VFSKN  RSLSFRQVRSLSIRRI
Sbjct: 1  MMMEIRHLE---GMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSLSIRRI 60

Query: 63 IEALSDFPSSTGGEASPSLSRGECEMTFDEDSS 96
          + ALSDFPS TG    P  SRGEC   FDE SS
Sbjct: 61 MAALSDFPSGTG---DPDESRGECGTMFDEGSS 87

[Close]

BLAST of HG10023174 vs. NCBI nr
Match: XP_023548863.1 (uncharacterized protein LOC111807384 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 111.7 bits (278), Expect = 3.5e-21
Identity = 68/93 (73.12%), Postives = 72/93 (77.42%), Query Frame = 0


Query: 3  MMVEISHLEGMLGMQATAAVFILVQILVYLILSKSSQVFSKNANRSLSFRQVRSLSIRRI 62
          MM+EI HLE   GM  TAAVF+LVQILVYLILSKSS VFSKN  RSLSFRQVRSL+IRRI
Sbjct: 1  MMMEIRHLE---GMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSLTIRRI 60

Query: 63 IEALSDFPSSTGGEASPSLSRGECEMTFDEDSS 96
          + ALSDFPS TG    P  SRGEC   FDE SS
Sbjct: 61 MAALSDFPSGTG---DPDESRGECGTMFDEGSS 87

[Close]

BLAST of HG10023174 vs. NCBI nr
Match: KAG6575656.1 (hypothetical protein SDJN03_26295, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014206.1 hypothetical protein SDJN02_24381, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 110.5 bits (275), Expect = 7.8e-21
Identity = 67/93 (72.04%), Postives = 72/93 (77.42%), Query Frame = 0


Query: 3  MMVEISHLEGMLGMQATAAVFILVQILVYLILSKSSQVFSKNANRSLSFRQVRSLSIRRI 62
          MM+EI HLE   GM  TAAVF+LVQILVYLILSKSS VFSKN  RSLSFRQVRSL+IRRI
Sbjct: 1  MMMEIRHLE---GMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSLTIRRI 60

Query: 63 IEALSDFPSSTGGEASPSLSRGECEMTFDEDSS 96
          + ALSDFPS   G+  P  SRGEC   FDE SS
Sbjct: 61 MAALSDFPS---GDGDPDESRGECGTMFDEGSS 87

[Close]

BLAST of HG10023174 vs. NCBI nr
Match: XP_022991948.1 (uncharacterized protein LOC111488440 [Cucurbita maxima])

HSP 1 Score: 100.1 bits (248), Expect = 1.1e-17
Identity = 62/85 (72.94%), Postives = 65/85 (76.47%), Query Frame = 0


Query: 3  MMVEISHLEGMLGMQATAAVFILVQILVYLILSKSSQVFSKNANRSLSFRQVRSLSIRRI 62
          MM+EI HLE   GM  TAAVF+LVQILVYLILSKSS VFSKN  RSLSFRQVRSLSIRRI
Sbjct: 1  MMMEIRHLE---GMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSLSIRRI 60

Query: 63 IEALSDFPSSTGGEASPSLSRGECE 88
          + ALSDFPS  G    P  SRG  E
Sbjct: 61 MAALSDFPSGAG---DPDESRGNVE 79

[Close]

BLAST of HG10023174 vs. NCBI nr
Match: XP_038898457.1 (uncharacterized protein LOC120086089 [Benincasa hispida])

HSP 1 Score: 95.1 bits (235), Expect = 3.4e-16
Identity = 64/94 (68.09%), Postives = 70/94 (74.47%), Query Frame = 0


Query: 2  MMMVEISHLEGMLGMQATAAVFILVQILVYLILSKSSQVFSKNANRSLSFRQVRSLSIRR 61
          MMM+EISH +GM+   ATAAVFILVQILVYLILSKSSQVFSK  NRSLSFRQV+SLS  R
Sbjct: 1  MMMMEISHFQGMV---ATAAVFILVQILVYLILSKSSQVFSKKMNRSLSFRQVQSLS--R 60

Query: 62 IIEALSDFPSSTGGEASPSLSRGECEMTFDEDSS 96
          II+ LSDFPSS+             E TFDE SS
Sbjct: 61 IIKPLSDFPSSSDSS----------ETTFDEGSS 79

[Close]

BLAST of HG10023174 vs. ExPASy TrEMBL
Match: A0A6J1GRF7 (uncharacterized protein LOC111456452 OS=Cucurbita moschata OX=3662 GN=LOC111456452 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 7.6e-22
Identity = 69/93 (74.19%), Postives = 72/93 (77.42%), Query Frame = 0


Query: 3  MMVEISHLEGMLGMQATAAVFILVQILVYLILSKSSQVFSKNANRSLSFRQVRSLSIRRI 62
          MM+EI HLE   GM  TAAVF+LVQILVYLILSKSS VFSKN  RSLSFRQVRSLSIRRI
Sbjct: 1  MMMEIRHLE---GMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSLSIRRI 60

Query: 63 IEALSDFPSSTGGEASPSLSRGECEMTFDEDSS 96
          + ALSDFPS TG    P  SRGEC   FDE SS
Sbjct: 61 MAALSDFPSGTG---DPDESRGECGTMFDEGSS 87

[Close]

BLAST of HG10023174 vs. ExPASy TrEMBL
Match: A0A6J1JXQ0 (uncharacterized protein LOC111488440 OS=Cucurbita maxima OX=3661 GN=LOC111488440 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 5.1e-18
Identity = 62/85 (72.94%), Postives = 65/85 (76.47%), Query Frame = 0


Query: 3  MMVEISHLEGMLGMQATAAVFILVQILVYLILSKSSQVFSKNANRSLSFRQVRSLSIRRI 62
          MM+EI HLE   GM  TAAVF+LVQILVYLILSKSS VFSKN  RSLSFRQVRSLSIRRI
Sbjct: 1  MMMEIRHLE---GMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSLSIRRI 60

Query: 63 IEALSDFPSSTGGEASPSLSRGECE 88
          + ALSDFPS  G    P  SRG  E
Sbjct: 61 MAALSDFPSGAG---DPDESRGNVE 79

[Close]

BLAST of HG10023174 vs. ExPASy TrEMBL
Match: A0A6J1D0M4 (uncharacterized protein LOC111016209 OS=Momordica charantia OX=3673 GN=LOC111016209 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.4e-15
Identity = 64/101 (63.37%), Postives = 69/101 (68.32%), Query Frame = 0


Query: 2  MMMVEISHLEGMLGMQATAAVFILVQILVYLILSKSSQVFSKNANRSLSFRQVRSLSIRR 61
          MM +EI  LEG++   ATAAVF LVQILVYLILSKSS VFSKN  RSLSFR VRSLSIRR
Sbjct: 1  MMTMEIIPLEGIV---ATAAVFFLVQILVYLILSKSSDVFSKNTKRSLSFRHVRSLSIRR 60

Query: 62 IIEALSDFPSSTGGEASPSLSR-------GECEMTFDEDSS 96
          I+ ALSD PS  GGE SP           GEC   F + SS
Sbjct: 61 ILAALSDVPS--GGEPSPPNESPSPFSIGGECAAMFRDGSS 96

[Close]

BLAST of HG10023174 vs. ExPASy TrEMBL
Match: A0A660KP35 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_010708 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 7.9e-11
Identity = 47/81 (58.02%), Postives = 58/81 (71.60%), Query Frame = 0


Query: 3  MMVEISHLEGMLGMQATAAVFILVQILVYLILSKSSQVFSKNANRSLSFRQVRSLSIRRI 62
          M++EIS L     M    A+F+LVQ+LVYLILS SS +FSKNA RSLSFR  RS+SI R+
Sbjct: 1  MVMEISSLAD--NMVLKVAMFLLVQVLVYLILSNSSGIFSKNARRSLSFRPARSVSINRV 60

Query: 63 IEALSDFPSSTGGEASPSLSR 84
          +  LSD P+  GGE SP+ SR
Sbjct: 61 LAFLSDMPA--GGELSPAASR 77

[Close]

BLAST of HG10023174 vs. ExPASy TrEMBL
Match: A0A6J0PQA3 (uncharacterized protein LOC109506509 OS=Elaeis guineensis var. tenera OX=51953 GN=LOC109506509 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 2.0e-09
Identity = 42/62 (67.74%), Postives = 48/62 (77.42%), Query Frame = 0


Query: 21 AVFILVQILVYLILSKSSQVFSKNANRSLSFRQVRSLSIRRIIEALSDFPSSTGGEASPS 80
          A+F+LVQ LVYLILSKSS +FS    RSLSFR VRS+SIRR++ ALSD P   GGE SPS
Sbjct: 19 AMFVLVQALVYLILSKSSNIFSTTKTRSLSFRTVRSVSIRRMLAALSDLP--PGGEPSPS 78

Query: 81 LS 83
           S
Sbjct: 79 SS 78

[Close]

BLAST of HG10023174 vs. TAIR 10
Match: AT1G05575.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: anaerobic respiration; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31945.1); Has 63 Blast hits to 63 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 62.8 bits (151), Expect = 1.7e-10
Identity = 39/68 (57.35%), Postives = 46/68 (67.65%), Query Frame = 0


Query: 15 GMQATAAVFILVQILVYLILSKSSQVF--SKNANRSLSFRQVRSLSIRRIIEALSDFPSS 74
          GM    ++F L+Q LVYLILSKSS VF  SK   R+ SFR  RS+SIRRI+  L D P+ 
Sbjct: 7  GMLMKVSIFALIQGLVYLILSKSSSVFSTSKTMKRAYSFRSARSISIRRILAVLQDMPA- 66

Query: 75 TGGEASPS 81
           GGE SPS
Sbjct: 67 -GGEMSPS 72

[Close]

BLAST of HG10023174 vs. TAIR 10
Match: AT2G31945.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G05575.1); Has 61 Blast hits to 61 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 57.4 bits (137), Expect = 7.3e-09
Identity = 44/86 (51.16%), Postives = 56/86 (65.12%), Query Frame = 0


Query: 10 LEGMLG-MQATAAVFILVQILVYLILSKSSQVF--SKNANRSLSFRQVRSLSIRRIIEAL 69
          ++G LG M    A+F LVQ LVYLIL KSS+VF  S +  R+ SFR +RS+SIRRI+ AL
Sbjct: 1  MDGGLGTMLMKVALFALVQGLVYLILLKSSRVFARSNSLKRAYSFRPMRSVSIRRILAAL 60

Query: 70 SDFPSSTGGEASPSLSRGECEMTFDE 93
           D P+  G + SPS S G    + DE
Sbjct: 61 QDIPA--GDDMSPS-SNGSSSSSQDE 83

The following BLAST results are available for this feature:

BLAST of HG10023174 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022954080.1	1.6e-21	74.19	uncharacterized protein LOC111456452 [Cucurbita moschata]	[more]
XP_023548863.1	3.5e-21	73.12	uncharacterized protein LOC111807384 [Cucurbita pepo subsp. pepo]	[more]
KAG6575656.1	7.8e-21	72.04	hypothetical protein SDJN03_26295, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022991948.1	1.1e-17	72.94	uncharacterized protein LOC111488440 [Cucurbita maxima]	[more]
XP_038898457.1	3.4e-16	68.09	uncharacterized protein LOC120086089 [Benincasa hispida]	[more]

BLAST of HG10023174 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10023174 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GRF7	7.6e-22	74.19	uncharacterized protein LOC111456452 OS=Cucurbita moschata OX=3662 GN=LOC1114564...	[more]
A0A6J1JXQ0	5.1e-18	72.94	uncharacterized protein LOC111488440 OS=Cucurbita maxima OX=3661 GN=LOC111488440...	[more]
A0A6J1D0M4	1.4e-15	63.37	uncharacterized protein LOC111016209 OS=Momordica charantia OX=3673 GN=LOC111016...	[more]
A0A660KP35	7.9e-11	58.02	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_010708 PE=4 SV=1	[more]
A0A6J0PQA3	2.0e-09	67.74	uncharacterized protein LOC109506509 OS=Elaeis guineensis var. tenera OX=51953 G...	[more]

BLAST of HG10023174 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G05575.1	1.7e-10	57.35	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: anaerobi...	[more]
AT2G31945.1	7.3e-09	51.16	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 70..95
None	No IPR available	PANTHER	PTHR34268:SF13	SUBFAMILY NOT NAMED	coord: 19..83
None	No IPR available	PANTHER	PTHR34268	OS01G0321850 PROTEIN	coord: 19..83

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10023174.1	HG10023174.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane