HG10023171 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10023171
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	CCR4-NOT transcription complex subunit like
Location	Chr05: 31861922 .. 31863760 (-)
RNA-Seq Expression	HG10023171
Synteny	HG10023171

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCATCTTCGCTGCGCCGCCGTCTCAACTGAATCTCACATCCCGCCCGAGTTTGATTCCCAGAGCCGTTCTTCCCTCCTCCATCGCCGGCATTCAATTTCACTCGAACACCTCTCCATTTCCTTCTTTCAGGTATTCGTCGTTTAATCACTCCTCTTCGATCTCTCGCATTCACTAGTTGTAACGAGACTAGTGAGCATGTAGCAACGAAGTTCATCTGTTACTTAGTTCTGTAAAGTGGATCGACTTTGATTCTTTTTTGTTGAAAATGGAATTTAGCAGGCAGTTGCTAATTCCTAATTGCTTTTGGCTACTAACGCCAAGTGCTTTCATTAGTATTAGGTTTTTGTTTTTATGAACTGTTTTGTAAGTTTATGTGTGACGCACCTTTGATTTGATTCCTACTTAAGCAGTCTTCTTCGATCCCTCGCATTCAACATTTATAATCTCAGAGGATATCCAGATTGTTATGTGTTAAATTGAGCATGTAAGCATTAAAGTGAATCCACTTTGATTTCTGTGTTGAAAGTGGAATTGAACGATAGTTGCTGCCTTGCTGGTTTCTAATTGGTTTCAGCTACTGAAGCAAACAGCTTATACTAGTATTATGTTTTACTTTTCTGAATGTTTTGAAGTTTAAACGTAGTGAACCTTTGATTTGATACCTATTTAAGCAGTCCTCTTCGATTCTGCAGTTATTGTAGGGTGTTGCCCTGTTGTGAGCATGTTAGCATTCAAGTTCGTCTATAACTTAGTTATTTAAAGGGAATCCACTTTGATTCTTGTGCTGAAAATGGAATTTGGAGGTAGTTTCTTAATCCTAATTGGTTTTGTTTTTGGCTAGTAACACGAAGAGCTTAAACTAGTATTAAGATTGAGACTTTCTGATCTGGTTCGACGTCTTCATGGGATAGATCTTTGGTTTGATACTTATTTGGCCATTAAATGAACATAATTTTTGGTTTCCGGATGCAAATAGGGAAAGTCTTATTAGTTCTTCTCTGATAGCAAAGTAGTTATACTTGAGATTTCCGGGAAATAATAGTTCTGGAATGGCCTATATGGTATCTTGAAAAAAGAAATTAGATTTTTTGGGTTAACCACGGTCCACAGTTGTTATATGCACCAAAGTATCCTTTTGTTGATGGCACAAAAATGGTTATAATCTTGAAACAATCAATTAAATCCTATTGTCTTCTCAAGTTCTCAGTTGACTCATATATGATGTGGAATGAATCAAACACATCAGCATCTCTGCATTCTCTTTCTTTTCAGTAATTTGGAGTTTCCTCTTTAAAATCTTCTGGAGTATTGAGGTGGAAAATAAGTTTCCTATCATTCTTGGTTCCATTTTTATTGTTCTTTGTTTTGCCTTTCAGGATCTTTAATGTCATTTACTACTAGTATTAGTTTACTCAGAAAGATATGATATGCTTTTATAAGAGCCAAATCATTAGCTGAGATCCTCTTTTCACCTGCTAGGCACATTTACCAGAAATTAGAATTACATTTAAGAGTCTGAGATGACTGATATTTGTACTCATAATATAACTACCCAGATGAGTGCTTGTGTGGATTTCTTTTATGCAGGTATAGGAACAGCAGAGGATTGGAATTAAGGCAAAGATCCTTTTCTATAACAGCCTCAAATTCCTCAGATGGGAATTCCATCAAGGAGGAAAATGGTTCGAGTAAAGCAACAAGTGATGCCGAAGGTCCTCCATTTCTTACCATTTTGGCTGGAATTTTTGTCTTTTCCCTTGTACTCTGGATATTCAGTTCTGCTATCGCGTCAGTTATAGGTCTAGTCGTCAAGCTGTTCTCAACAAAGTAG

mRNA sequence

ATGGCTTCCATCTTCGCTGCGCCGCCGTCTCAACTGAATCTCACATCCCGCCCGAGTTTGATTCCCAGAGCCGTTCTTCCCTCCTCCATCGCCGGCATTCAATTTCACTCGAACACCTCTCCATTTCCTTCTTTCAGGTATTCGTCGTATAGGAACAGCAGAGGATTGGAATTAAGGCAAAGATCCTTTTCTATAACAGCCTCAAATTCCTCAGATGGGAATTCCATCAAGGAGGAAAATGGTTCGAGTAAAGCAACAAGTGATGCCGAAGGTCCTCCATTTCTTACCATTTTGGCTGGAATTTTTGTCTTTTCCCTTGTACTCTGGATATTCAGTTCTGCTATCGCGTCAGTTATAGGTCTAGTCGTCAAGCTGTTCTCAACAAAGTAG

Coding sequence (CDS)

ATGGCTTCCATCTTCGCTGCGCCGCCGTCTCAACTGAATCTCACATCCCGCCCGAGTTTGATTCCCAGAGCCGTTCTTCCCTCCTCCATCGCCGGCATTCAATTTCACTCGAACACCTCTCCATTTCCTTCTTTCAGGTATTCGTCGTATAGGAACAGCAGAGGATTGGAATTAAGGCAAAGATCCTTTTCTATAACAGCCTCAAATTCCTCAGATGGGAATTCCATCAAGGAGGAAAATGGTTCGAGTAAAGCAACAAGTGATGCCGAAGGTCCTCCATTTCTTACCATTTTGGCTGGAATTTTTGTCTTTTCCCTTGTACTCTGGATATTCAGTTCTGCTATCGCGTCAGTTATAGGTCTAGTCGTCAAGCTGTTCTCAACAAAGTAG

Protein sequence

MASIFAAPPSQLNLTSRPSLIPRAVLPSSIAGIQFHSNTSPFPSFRYSSYRNSRGLELRQRSFSITASNSSDGNSIKEENGSSKATSDAEGPPFLTILAGIFVFSLVLWIFSSAIASVIGLVVKLFSTK

Homology

[Close]

BLAST of HG10023171 vs. NCBI nr
Match: XP_022953425.1 (uncharacterized protein LOC111455984 [Cucurbita moschata])

HSP 1 Score: 193.0 bits (489), Expect = 1.6e-45
Identity = 107/129 (82.95%), Postives = 117/129 (90.70%), Query Frame = 0


Query: 1   MASIFAAPPSQLNLTSRPSLIPRAVLPSSIAGIQFHSNTSPFPSFRYSSYRNSRGLELRQ 60
           MASIF+APPS+LNLTSRPSLI  AVLPSSIAGIQ+HSN  P PSFR   YRN++GLELRQ
Sbjct: 1   MASIFSAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFR---YRNTKGLELRQ 60

Query: 61  RSFSITASNSSDGNSIKEENGSSKATSDAEGPPFLTILAGIFVFSLVLWIFSSAIASVIG 120
           RSFSITASNSSDGNSIKEENGSSKA+SDA+GPPFLTILAGIFVFSL+LW+ SSA  S+IG
Sbjct: 61  RSFSITASNSSDGNSIKEENGSSKASSDAQGPPFLTILAGIFVFSLLLWMLSSAATSLIG 120

Query: 121 LVVKLFSTK 130
           LVVKL STK
Sbjct: 121 LVVKLISTK 126

[Close]

BLAST of HG10023171 vs. NCBI nr
Match: XP_038899532.1 (uncharacterized protein LOC120086813 isoform X1 [Benincasa hispida])

HSP 1 Score: 191.8 bits (486), Expect = 3.6e-45
Identity = 107/129 (82.95%), Postives = 114/129 (88.37%), Query Frame = 0


Query: 1   MASIFAAPPSQLNLTSRPSLIPRAVLPSSIAGIQFHSNTSPFPSFRYSSYRNSRGLELRQ 60
           MASIFAAP  +LNLTSRPSLI RA LPSSI  IQFHSN SPFPSFR   YRN+RGLELRQ
Sbjct: 1   MASIFAAPSFRLNLTSRPSLIHRAALPSSIDAIQFHSNASPFPSFR---YRNTRGLELRQ 60

Query: 61  RSFSITASNSSDGNSIKEENGSSKATSDAEGPPFLTILAGIFVFSLVLWIFSSAIASVIG 120
           RSFSITASNSSDGNSIKEENGSSKA++DA+GPPFLTILAGIFVFSLVLWIFSS + S + 
Sbjct: 61  RSFSITASNSSDGNSIKEENGSSKASTDAQGPPFLTILAGIFVFSLVLWIFSSVVTSFLS 120

Query: 121 LVVKLFSTK 130
           LVVKL STK
Sbjct: 121 LVVKLISTK 126

[Close]

BLAST of HG10023171 vs. NCBI nr
Match: KAG6575660.1 (hypothetical protein SDJN03_26299, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014210.1 hypothetical protein SDJN02_24385 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 191.0 bits (484), Expect = 6.2e-45
Identity = 107/129 (82.95%), Postives = 116/129 (89.92%), Query Frame = 0


Query: 1   MASIFAAPPSQLNLTSRPSLIPRAVLPSSIAGIQFHSNTSPFPSFRYSSYRNSRGLELRQ 60
           MASIFAAPPS+LNLTSRPSLI  AVLPSSIAGIQ+HSN  P PSFR   YRN++GLELRQ
Sbjct: 1   MASIFAAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFR---YRNTKGLELRQ 60

Query: 61  RSFSITASNSSDGNSIKEENGSSKATSDAEGPPFLTILAGIFVFSLVLWIFSSAIASVIG 120
           RSFSITASNSSD NSIKEENGSSKA+SDA+GPPFLTILAGIFVFSL+LW+ SSA  S+IG
Sbjct: 61  RSFSITASNSSDRNSIKEENGSSKASSDAQGPPFLTILAGIFVFSLLLWMLSSAATSLIG 120

Query: 121 LVVKLFSTK 130
           LVVKL STK
Sbjct: 121 LVVKLISTK 126

[Close]

BLAST of HG10023171 vs. NCBI nr
Match: XP_023547947.1 (uncharacterized protein LOC111806743 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 186.8 bits (473), Expect = 1.2e-43
Identity = 105/129 (81.40%), Postives = 114/129 (88.37%), Query Frame = 0


Query: 1   MASIFAAPPSQLNLTSRPSLIPRAVLPSSIAGIQFHSNTSPFPSFRYSSYRNSRGLELRQ 60
           MASIFAAPPS+LNLTSRPSLI  AVLPSS AGIQ+HSN  P PSF   SYRN++GLELRQ
Sbjct: 1   MASIFAAPPSRLNLTSRPSLIHGAVLPSSTAGIQYHSNAFPIPSF---SYRNTKGLELRQ 60

Query: 61  RSFSITASNSSDGNSIKEENGSSKATSDAEGPPFLTILAGIFVFSLVLWIFSSAIASVIG 120
           RSFSITASNSSD NSIKEENGSSKA+ DA+GPPFLTILAGIFVFSL+LW+ SSA  S+IG
Sbjct: 61  RSFSITASNSSDRNSIKEENGSSKASRDAQGPPFLTILAGIFVFSLLLWMLSSAATSLIG 120

Query: 121 LVVKLFSTK 130
           LVVKL STK
Sbjct: 121 LVVKLISTK 126

[Close]

BLAST of HG10023171 vs. NCBI nr
Match: XP_022991945.1 (uncharacterized protein LOC111488436 [Cucurbita maxima])

HSP 1 Score: 185.7 bits (470), Expect = 2.6e-43
Identity = 104/128 (81.25%), Postives = 114/128 (89.06%), Query Frame = 0


Query: 1   MASIFAAPPSQLNLTSRPSLIPRAVLPSSIAGIQFHSNTSPFPSFRYSSYRNSRGLELRQ 60
           MASIFAAPPS+LNLTSRPSLI  AVLPSSIAGIQ+HSN  P PSFR   YRN++GLEL  
Sbjct: 1   MASIFAAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFR---YRNTKGLELSP 60

Query: 61  RSFSITASNSSDGNSIKEENGSSKATSDAEGPPFLTILAGIFVFSLVLWIFSSAIASVIG 120
           RSFSITASNSSDGNSI+EENGSSKA+SDA+GPPFLTILAGIFVFSL+LW+ SSA  S+IG
Sbjct: 61  RSFSITASNSSDGNSIEEENGSSKASSDAQGPPFLTILAGIFVFSLLLWMLSSAATSLIG 120

Query: 121 LVVKLFST 129
           LVVKL ST
Sbjct: 121 LVVKLIST 125

[Close]

BLAST of HG10023171 vs. ExPASy TrEMBL
Match: A0A6J1GPL5 (uncharacterized protein LOC111455984 OS=Cucurbita moschata OX=3662 GN=LOC111455984 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 7.9e-46
Identity = 107/129 (82.95%), Postives = 117/129 (90.70%), Query Frame = 0


Query: 1   MASIFAAPPSQLNLTSRPSLIPRAVLPSSIAGIQFHSNTSPFPSFRYSSYRNSRGLELRQ 60
           MASIF+APPS+LNLTSRPSLI  AVLPSSIAGIQ+HSN  P PSFR   YRN++GLELRQ
Sbjct: 1   MASIFSAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFR---YRNTKGLELRQ 60

Query: 61  RSFSITASNSSDGNSIKEENGSSKATSDAEGPPFLTILAGIFVFSLVLWIFSSAIASVIG 120
           RSFSITASNSSDGNSIKEENGSSKA+SDA+GPPFLTILAGIFVFSL+LW+ SSA  S+IG
Sbjct: 61  RSFSITASNSSDGNSIKEENGSSKASSDAQGPPFLTILAGIFVFSLLLWMLSSAATSLIG 120

Query: 121 LVVKLFSTK 130
           LVVKL STK
Sbjct: 121 LVVKLISTK 126

[Close]

BLAST of HG10023171 vs. ExPASy TrEMBL
Match: A0A6J1JUC2 (uncharacterized protein LOC111488436 OS=Cucurbita maxima OX=3661 GN=LOC111488436 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 1.3e-43
Identity = 104/128 (81.25%), Postives = 114/128 (89.06%), Query Frame = 0


Query: 1   MASIFAAPPSQLNLTSRPSLIPRAVLPSSIAGIQFHSNTSPFPSFRYSSYRNSRGLELRQ 60
           MASIFAAPPS+LNLTSRPSLI  AVLPSSIAGIQ+HSN  P PSFR   YRN++GLEL  
Sbjct: 1   MASIFAAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFR---YRNTKGLELSP 60

Query: 61  RSFSITASNSSDGNSIKEENGSSKATSDAEGPPFLTILAGIFVFSLVLWIFSSAIASVIG 120
           RSFSITASNSSDGNSI+EENGSSKA+SDA+GPPFLTILAGIFVFSL+LW+ SSA  S+IG
Sbjct: 61  RSFSITASNSSDGNSIEEENGSSKASSDAQGPPFLTILAGIFVFSLLLWMLSSAATSLIG 120

Query: 121 LVVKLFST 129
           LVVKL ST
Sbjct: 121 LVVKLIST 125

[Close]

BLAST of HG10023171 vs. ExPASy TrEMBL
Match: A0A0A0K9W1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G429580 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 1.8e-37
Identity = 98/130 (75.38%), Postives = 107/130 (82.31%), Query Frame = 0


Query: 1   MASIFAAPPSQLNLTSRPSLIPRAVLPSSIAGIQFHSNTSPFPSFRYSSYRNSRGLELRQ 60
           MAS+FAAPPSQLNLTSR S I RA LPS IA IQFHSN SPFPSFRY   +N  GLELRQ
Sbjct: 1   MASVFAAPPSQLNLTSRRSSIHRAFLPSYIASIQFHSNASPFPSFRYR--KNIIGLELRQ 60

Query: 61  RSFSITASNSSDGNSIKEENGSSKATS-DAEGPPFLTILAGIFVFSLVLWIFSSAIASVI 120
           R  SI AS S+DGNSIKEEN SSKA+S DA+GPPFLTILAG FV SL+LWIFSSA+ S++
Sbjct: 61  R--SIAASKSTDGNSIKEENSSSKASSDDAQGPPFLTILAGFFVLSLILWIFSSAVTSLL 120

Query: 121 GLVVKLFSTK 130
           GLVVKL S K
Sbjct: 121 GLVVKLISAK 126

[Close]

BLAST of HG10023171 vs. ExPASy TrEMBL
Match: A0A6J1KVQ7 (uncharacterized protein LOC111498025 OS=Cucurbita maxima OX=3661 GN=LOC111498025 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 2.2e-35
Identity = 92/130 (70.77%), Postives = 106/130 (81.54%), Query Frame = 0


Query: 1   MASIFAAPPSQLNLTS-RPSLIPRAVLPSSIAGIQFHSNTSPFPSFRYSSYRNSRGLELR 60
           MAS+FAAPPSQL L+S RPSL  +A LP SI G++FH N  P PSFR   Y+N++GL+LR
Sbjct: 1   MASVFAAPPSQLVLSSHRPSLDHKAFLP-SIVGVKFHRNGFPIPSFR---YKNTKGLKLR 60

Query: 61  QRSFSITASNSSDGNSIKEENGSSKATSDAEGPPFLTILAGIFVFSLVLWIFSSAIASVI 120
           QRSFSITASNSSDGNS KEEN  SK T DA+GPPFLTILAG FVFSLVLWI SS++ ++I
Sbjct: 61  QRSFSITASNSSDGNSTKEENDGSKVTGDAQGPPFLTILAGFFVFSLVLWIVSSSVTTLI 120

Query: 121 GLVVKLFSTK 130
            LVVKL STK
Sbjct: 121 ALVVKLISTK 126

[Close]

BLAST of HG10023171 vs. ExPASy TrEMBL
Match: A0A6J1H506 (uncharacterized protein LOC111460632 OS=Cucurbita moschata OX=3662 GN=LOC111460632 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.8e-34
Identity = 90/130 (69.23%), Postives = 105/130 (80.77%), Query Frame = 0


Query: 1   MASIFAAPPSQLNLTS-RPSLIPRAVLPSSIAGIQFHSNTSPFPSFRYSSYRNSRGLELR 60
           MAS+FAAPPSQL L+S RPSL  +A LP SI G++FH N  P PSFR   Y+N++GL+LR
Sbjct: 1   MASVFAAPPSQLVLSSHRPSLDHKAFLP-SIVGVKFHRNGFPIPSFR---YKNTKGLKLR 60

Query: 61  QRSFSITASNSSDGNSIKEENGSSKATSDAEGPPFLTILAGIFVFSLVLWIFSSAIASVI 120
           QRSFSITASNSSDGNS KE+N  SK T DA+GPPFLTILAG FVFSLVLWI SS++ ++I
Sbjct: 61  QRSFSITASNSSDGNSTKEKNDGSKVTGDAQGPPFLTILAGFFVFSLVLWIVSSSVTTLI 120

Query: 121 GLVVKLFSTK 130
            L VKL STK
Sbjct: 121 ALAVKLISTK 126

The following BLAST results are available for this feature:

BLAST of HG10023171 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022953425.1	1.6e-45	82.95	uncharacterized protein LOC111455984 [Cucurbita moschata]	[more]
XP_038899532.1	3.6e-45	82.95	uncharacterized protein LOC120086813 isoform X1 [Benincasa hispida]	[more]
KAG6575660.1	6.2e-45	82.95	hypothetical protein SDJN03_26299, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023547947.1	1.2e-43	81.40	uncharacterized protein LOC111806743 [Cucurbita pepo subsp. pepo]	[more]
XP_022991945.1	2.6e-43	81.25	uncharacterized protein LOC111488436 [Cucurbita maxima]	[more]

BLAST of HG10023171 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10023171 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GPL5	7.9e-46	82.95	uncharacterized protein LOC111455984 OS=Cucurbita moschata OX=3662 GN=LOC1114559...	[more]
A0A6J1JUC2	1.3e-43	81.25	uncharacterized protein LOC111488436 OS=Cucurbita maxima OX=3661 GN=LOC111488436...	[more]
A0A0A0K9W1	1.8e-37	75.38	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G429580 PE=4 SV=1	[more]
A0A6J1KVQ7	2.2e-35	70.77	uncharacterized protein LOC111498025 OS=Cucurbita maxima OX=3661 GN=LOC111498025...	[more]
A0A6J1H506	1.8e-34	69.23	uncharacterized protein LOC111460632 OS=Cucurbita moschata OX=3662 GN=LOC1114606...	[more]

BLAST of HG10023171 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..89

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10023171.1	HG10023171.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane