HG10023156 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10023156
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Unknown protein
Location	Chr05: 31658221 .. 31658415 (+)
RNA-Seq Expression	HG10023156
Synteny	HG10023156

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTTCTTCTGTCTTAGTTTCAACTCTGTTGGGTTGCTTCCTTCCTTCTCAATCTCCAAAGGTCACTGATGAAGAACAACATTCAAACTCAAAACTCAAACAACAGAAACAAAAATCAGATTCATCACACTCCTCTAAAGCTCCAATAATCGTCTCTTATTTCCCTGTTTCTGCAAATTTGTCTCGCTTGTGA

mRNA sequence

ATGCTTTCTTCTGTCTTAGTTTCAACTCTGTTGGGTTGCTTCCTTCCTTCTCAATCTCCAAAGGTCACTGATGAAGAACAACATTCAAACTCAAAACTCAAACAACAGAAACAAAAATCAGATTCATCACACTCCTCTAAAGCTCCAATAATCGTCTCTTATTTCCCTGTTTCTGCAAATTTGTCTCGCTTGTGA

Coding sequence (CDS)

ATGCTTTCTTCTGTCTTAGTTTCAACTCTGTTGGGTTGCTTCCTTCCTTCTCAATCTCCAAAGGTCACTGATGAAGAACAACATTCAAACTCAAAACTCAAACAACAGAAACAAAAATCAGATTCATCACACTCCTCTAAAGCTCCAATAATCGTCTCTTATTTCCCTGTTTCTGCAAATTTGTCTCGCTTGTGA

Protein sequence

MLSSVLVSTLLGCFLPSQSPKVTDEEQHSNSKLKQQKQKSDSSHSSKAPIIVSYFPVSANLSRL

Homology

[Close]

BLAST of HG10023156 vs. NCBI nr
Match: KAE8646409.1 (hypothetical protein Csa_016523 [Cucumis sativus])

HSP 1 Score: 92.8 bits (229), Expect = 1.1e-15
Identity = 53/68 (77.94%), Postives = 61/68 (89.71%), Query Frame = 0


Query: 1  MLSSVLVSTLLGCFLPSQSPKVT-DEEQHSNSKLKQQKQKSDSS---HSSKAPIIVSYFP 60
          MLSSVLVSTLLGCF+PS+SPKV+ +E+QHSNSKLKQQK KSDSS    S KAPI++SYFP
Sbjct: 1  MLSSVLVSTLLGCFIPSKSPKVSHEEQQHSNSKLKQQKPKSDSSTSTQSPKAPIVLSYFP 60

Query: 61 VSANLSRL 65
          VS+NLSRL
Sbjct: 61 VSSNLSRL 68

[Close]

BLAST of HG10023156 vs. NCBI nr
Match: XP_038899513.1 (uncharacterized protein LOC120086791 [Benincasa hispida])

HSP 1 Score: 82.0 bits (201), Expect = 2.0e-12
Identity = 45/64 (70.31%), Postives = 53/64 (82.81%), Query Frame = 0


Query: 1  MLSSVLVSTLLGCFLPSQSPKVTDEEQHSNSKLKQQKQKSDSSHSSKAPIIVSYFPVSAN 60
          M SS+  S LLGCFLPSQSPKV+  E++SN K+K +K KS+SS SSKAPIIVSYFPVS+N
Sbjct: 1  MPSSLSASILLGCFLPSQSPKVSRGEENSNQKIKPKKPKSESSKSSKAPIIVSYFPVSSN 60

Query: 61 LSRL 65
           SRL
Sbjct: 61 FSRL 64

[Close]

BLAST of HG10023156 vs. ExPASy TrEMBL
Match: A0A0A0K638 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G428965 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 7.5e-13
Identity = 49/68 (72.06%), Postives = 56/68 (82.35%), Query Frame = 0


Query: 1  MLSSVLVSTLLGCFLPSQSPKVT-DEEQHSNSKLKQQKQKSDSS---HSSKAPIIVSYFP 60
          M SS  VSTL GCFLPS+S KV+ +E+QHSNSKLKQQK KSDSS    S KAPI++SYFP
Sbjct: 1  MPSSASVSTLFGCFLPSKSSKVSHEEQQHSNSKLKQQKPKSDSSTSTQSPKAPIVLSYFP 60

Query: 61 VSANLSRL 65
          VS+NLSRL
Sbjct: 61 VSSNLSRL 68

[Close]

BLAST of HG10023156 vs. ExPASy TrEMBL
Match: A0A2P5AY30 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_338100 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 8.3e-04
Identity = 28/63 (44.44%), Postives = 42/63 (66.67%), Query Frame = 0


Query: 6  LVSTLLGCFLPSQSPKVTDEEQHSNSKL----KQQKQKSDSSHSSKAPIIVSYFPVSANL 65
          L S+L  CF PS SP+ +D+ ++   K+    K  K  S  S SSKAP++VS+FPV+++L
Sbjct: 3  LFSSLFHCFRPSSSPRASDQAENPKKKVKSMEKSSKSSSSKSKSSKAPLVVSHFPVNSSL 62

The following BLAST results are available for this feature:

BLAST of HG10023156 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8646409.1	1.1e-15	77.94	hypothetical protein Csa_016523 [Cucumis sativus]	[more]
XP_038899513.1	2.0e-12	70.31	uncharacterized protein LOC120086791 [Benincasa hispida]	[more]

BLAST of HG10023156 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10023156 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K638	7.5e-13	72.06	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G428965 PE=4 SV=1	[more]
A0A2P5AY30	8.3e-04	44.44	Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_338100 PE=4 SV...	[more]

BLAST of HG10023156 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 15..46
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 25..41
None	No IPR available	PANTHER	PTHR37748:SF1	SUBFAMILY NOT NAMED	coord: 5..64
None	No IPR available	PANTHER	PTHR37748	FAMILY NOT NAMED	coord: 5..64

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10023156.1	HG10023156.1	mRNA