HG10023047 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10023047
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	ADP-ribosylation factor
Location	Chr05: 30763130 .. 30763381 (-)
RNA-Seq Expression	HG10023047
Synteny	HG10023047

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGTCTCTACTGGTGTTATTGAAGGCTTTAATGGGAGTCTATGGACATGATGATGATGAAGTTGATGATGTTGAAGGGCATGGTGGTAATTTTAAGAGGAAGCTTGATGGGTCCAAAAATGGGAGTGAATTATCATTTGAGTTTGAGTTTTTGAGTTGTGTAACAATGGAAGGTGGTGGAGATGAGGATGCAGAAGACTTGAACATCAAGACATGGAAGTTGCTTGGAGAAAGCTGTCTTTGGCCTTGA

mRNA sequence

ATGTCGTCTCTACTGGTGTTATTGAAGGCTTTAATGGGAGTCTATGGACATGATGATGATGAAGTTGATGATGTTGAAGGGCATGGTGGTAATTTTAAGAGGAAGCTTGATGGGTCCAAAAATGGGAGTGAATTATCATTTGAGTTTGAGTTTTTGAGTTGTGTAACAATGGAAGGTGGTGGAGATGAGGATGCAGAAGACTTGAACATCAAGACATGGAAGTTGCTTGGAGAAAGCTGTCTTTGGCCTTGA

Coding sequence (CDS)

ATGTCGTCTCTACTGGTGTTATTGAAGGCTTTAATGGGAGTCTATGGACATGATGATGATGAAGTTGATGATGTTGAAGGGCATGGTGGTAATTTTAAGAGGAAGCTTGATGGGTCCAAAAATGGGAGTGAATTATCATTTGAGTTTGAGTTTTTGAGTTGTGTAACAATGGAAGGTGGTGGAGATGAGGATGCAGAAGACTTGAACATCAAGACATGGAAGTTGCTTGGAGAAAGCTGTCTTTGGCCTTGA

Protein sequence

MSSLLVLLKALMGVYGHDDDEVDDVEGHGGNFKRKLDGSKNGSELSFEFEFLSCVTMEGGGDEDAEDLNIKTWKLLGESCLWP

Homology

[Close]

BLAST of HG10023047 vs. NCBI nr
Match: KAG6593257.1 (hypothetical protein SDJN03_12733, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 94.0 bits (232), Expect = 6.6e-16
Identity = 52/83 (62.65%), Postives = 63/83 (75.90%), Query Frame = 0


Query: 1  MSSLLVLLKALMGVYGHDDDEVDDVEGHGGNFKRKLDGSKNGSELSFEFEFLSCVTMEGG 60
          M+SLLVLLKAL+GVYGHDD+  DD+E  GG F++KLDGS+NGS     FEF SCVTM   
Sbjct: 1  MASLLVLLKALIGVYGHDDNNDDDLERVGG-FEKKLDGSENGS----GFEFFSCVTM--- 60

Query: 61 GDEDAEDLNIKTWKLLGESCLWP 84
            ED E+L  KTWKLLG++ +WP
Sbjct: 61 --EDVEELK-KTWKLLGQTFVWP 72

[Close]

BLAST of HG10023047 vs. NCBI nr
Match: KGN45042.1 (hypothetical protein Csa_016734 [Cucumis sativus])

HSP 1 Score: 88.6 bits (218), Expect = 2.8e-14
Identity = 50/83 (60.24%), Postives = 59/83 (71.08%), Query Frame = 0


Query: 1  MSSLLVLLKALMGVYGHDDDEVDDVEGHGGNFKRKLDGSKNGSELSFEFEFLSCVTMEGG 60
          MSSLL+LLKALMG YG D    +D+EG+GG F+RK+DG         EFEFLS   + GG
Sbjct: 1  MSSLLMLLKALMGGYGDD----EDLEGNGGEFERKVDGLS-------EFEFLS---LGGG 60

Query: 61 GDEDAEDLNIKTWKLLGESCLWP 84
          GDED E+L  K WKLLGE+CLWP
Sbjct: 61 GDEDGEELK-KIWKLLGENCLWP 68

[Close]

BLAST of HG10023047 vs. NCBI nr
Match: KAA0058539.1 (ADP-ribosylation factor [Cucumis melo var. makuwa] >TYJ96895.1 ADP-ribosylation factor [Cucumis melo var. makuwa])

HSP 1 Score: 74.7 bits (182), Expect = 4.2e-10
Identity = 45/77 (58.44%), Postives = 49/77 (63.64%), Query Frame = 0


Query: 9   KALMGVYGHDDDEVDDVEGHGGNFKRK-LDGSKNGSELSFEFEFLSCVTME-GGGDEDAE 68
           KALMGVYG D+D            +RK +DG         EFEFLSCVTME GGGDED E
Sbjct: 180 KALMGVYGDDED-----------LERKVVDGLS-------EFEFLSCVTMEGGGGDEDEE 237

Query: 69  DLNIKTWKLLGESCLWP 84
           +L  K WKLLGESCLWP
Sbjct: 240 ELK-KIWKLLGESCLWP 237

[Close]

BLAST of HG10023047 vs. ExPASy TrEMBL
Match: A0A0A0K9K3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G414400 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.3e-14
Identity = 50/83 (60.24%), Postives = 59/83 (71.08%), Query Frame = 0


Query: 1  MSSLLVLLKALMGVYGHDDDEVDDVEGHGGNFKRKLDGSKNGSELSFEFEFLSCVTMEGG 60
          MSSLL+LLKALMG YG D    +D+EG+GG F+RK+DG         EFEFLS   + GG
Sbjct: 1  MSSLLMLLKALMGGYGDD----EDLEGNGGEFERKVDGLS-------EFEFLS---LGGG 60

Query: 61 GDEDAEDLNIKTWKLLGESCLWP 84
          GDED E+L  K WKLLGE+CLWP
Sbjct: 61 GDEDGEELK-KIWKLLGENCLWP 68

[Close]

BLAST of HG10023047 vs. ExPASy TrEMBL
Match: A0A5A7UYF2 (ADP-ribosylation factor OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold670G00050 PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 2.0e-10
Identity = 45/77 (58.44%), Postives = 49/77 (63.64%), Query Frame = 0


Query: 9   KALMGVYGHDDDEVDDVEGHGGNFKRK-LDGSKNGSELSFEFEFLSCVTME-GGGDEDAE 68
           KALMGVYG D+D            +RK +DG         EFEFLSCVTME GGGDED E
Sbjct: 180 KALMGVYGDDED-----------LERKVVDGLS-------EFEFLSCVTMEGGGGDEDEE 237

Query: 69  DLNIKTWKLLGESCLWP 84
           +L  K WKLLGESCLWP
Sbjct: 240 ELK-KIWKLLGESCLWP 237

The following BLAST results are available for this feature:

BLAST of HG10023047 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6593257.1	6.6e-16	62.65	hypothetical protein SDJN03_12733, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN45042.1	2.8e-14	60.24	hypothetical protein Csa_016734 [Cucumis sativus]	[more]
KAA0058539.1	4.2e-10	58.44	ADP-ribosylation factor [Cucumis melo var. makuwa] >TYJ96895.1 ADP-ribosylation ...	[more]

BLAST of HG10023047 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10023047 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K9K3	1.3e-14	60.24	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G414400 PE=4 SV=1	[more]
A0A5A7UYF2	2.0e-10	58.44	ADP-ribosylation factor OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of HG10023047 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10023047.1	HG10023047.1	mRNA