HG10022891 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10022891
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Pentatricopeptide repeat-containing protein
Location	Chr05: 29350985 .. 29354255 (+)
RNA-Seq Expression	HG10022891
Synteny	HG10022891

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTCGTACTGGCCTCATCAACCAAATCTTCCCCGCCAGCCGCCTCCTAGCCTTCTGTGCGCTCTCCGATTCCGGCGACATTCACTATGCACATCTCCTTTTCGCTCAAATTGAACACCCCAATTGCTTTATCTGGAACACAATGATCAAGGGTTATTGCAGAACTAAATACCCTTCAATGGGGTTCTCATTTTTCCGGCAAATGATTCGGAATCGCGTTGAATTGGATTGTGGGAGCTTTGTTTTCGCACTCAAGGCATGCGCCCAATTCGCGGGGAAAATTTTGGGAATGGCGGTGCATTCTGTGATTTGGAAACTGGGGTTTGATTCTGAATTGTTAGTCCAAAATGGATTGATTCAAAACTATGTTGAAACTAGGTGTCTTGGTTTTGCACGCCAAGTGTTTGATGAATGTTCTGTGAAGGATGTTGTTACTTGGACGACGATGATCAATGGGTACACGAGGAACAATTGGTTGGATGAGGCTATAGCGTTATTCAATTCAATGTTGTCGAGTGATGTCGAGCCGAATGAGGTTACAATGATTGCCTTGCTTTCTGCTTGCTCACAGAAGGGAGATTCTGTAATGGGGAGGACTCTTCATGAACATATAAGAAGGAAGGGCATAACCTGTAGTGTTAATTTGCTCAATACCATGTTGGATATGTATGTGAAATGTGGTTGTTTAGCTACTGCAAGAGAGATTTTTAACAATATGGAAAGAAGGGATGTTTTTTCTTGGACTAGCTTGCTTAATGGATATGCAAAAAGTGGAGACTTGGAATCTGCAAGGAAGCTGTTTGATGAAATGCCTGAGAGAAATATTGTCTCTTGGAATGCAATGATAGCTGGTTATTCTCAAAACAGTCAGCCAATGGAAGCTTTGGAGATATTTCACAACATGGTGGATGTTGTTGGGTTGGTTCCAACAGAGGACACTTTGGTCTGTGTGCTTTCTGCTTGTGGTCAATTAGGATGCTTGGAAATGGGCAAAGGGATTCACAACGACCATGTCAATAAAATGGGAGTTCAAGTTAGTTTGATTCTGAAAAATGCCGTTATGGACATGTATGCCAAATGTGGAAGCATTGATGCAGCTGCAAAGCTCTTCCATTCTATGCCTGAGAAAAATCTGGTTTCTTGGAACTCCATGATTTCTGCATATGCATCCCATGGCCATGCCAAGAAAGCTCTCACTCTTTTCGACCAAATGAAAGGCTCGGGACAAAAACCAGATCATATCACCTTCATTGGTGTCCTATCAGCTTGCAGTTATGGCAGTTTCGTTTCCGAAGGTCAGATGCATTTCGAAAGTATGGAAAGGTGCTTTGGAATAGAGCCAAAGAGGGAACACTATGCGTGTATGGTGGATTTGCTTAGTCGAGTCGGGCTGTTGAAGGAAGCTTACGAGCTAATATCGAAGATGCCGATGGAAGCAAGTGAAGGGGCTTGGGGGGCTTTGCTTGATGCTTGTAGGAAGCATGGGAATGTGGAAATGGCAAAGTTAGCAGCTGAGAAGCTTCTGGAATTGGATCCAGAAGACAGTGGGATTTATAGTCTTTTGGCAAATATTTGTGCTGATGGAAAGAAATGGAATGATGTGAGAATGGTGAGAAGGATGATGAGAGAAAGAGGGGTAAAGAAGGTTCCTGGGCATAGCTTAATAGAGATTGGAGGTAAGTTTCATGAGTTCTTAGTTGCTGATACTTCTCACCCTCATTCTTCACAAGTTTACAGAGTGGTAAATGAATTGCTTTTGTTGTCTAGTTTCATTGACTTTGAACCTCAAGAAAATGGTTAGTTCTTTAGTAATTTCTAGCCATTCTTACATTGAGAATGTGATGCTATTTGTTTCTATATGAATGGTTCATGGGATATATAATGTGACCCTAAATTGTGGAATTGAATTGTGTTTAAGATGGTATTTTTGAAAAACGTCTTCAAGACATTATTGCATTTTAGGTTTTGCAGCGATTGCTAGCTAGAGGTGTACACAGATTGGGTTGGGAGAATTTTTTTTAACCAACTAAATTTTTTTGGTTGATCGGGTTAACTACCCGAAAGACTCGAATAAGGTTTCCAACCCATTTAACCCAATCCAACCCAACTCGAGAACTAATCCAACCCAACCCTTACAATTTGGTTGAGTAGTCTAGGTTGTTCGGGTTGTTAGGTCATTTGAACACCCCTAGTAATCGTTGTGCCTTCCCACTCATTTGGTCTCTTAGTCTATGTGCTCGAGTACATTAGCCTTGCCTTTATCGTGTATTTTCATTTAAGTGAGTATACTATAAATTTAGACGAATACATATAATTATATGACTAGCTATATTCAATATTTGCATTTCCACTTAATTTTGGAATGTTTAAAGTTCAACTTTTAAGTGGTGGACGCTGATAGCAATAAGTTTAGGGGTGTAAGGAAAAACTGAAAAACTCAAAAAATCGCTTAAACTGACCGAAACCACTTTGTCGGTTTGGGTTGAAGCCGGTCGGTTTGGCGGTTTCAGGTTGAAAATATAAAAAACCGAAAAGTGCTTGTCGATTTCGGGTTAGGCAAAAAAAAAAAAAAGAAAAAAGAGTGAAAAATTGAGTTGGCCGCTAAAATATATATAATATGCGTCAGATGTTATTTCAAAAAACTCTTTCGTTAGGTGGTGAGGAGGCACGCCCAGATGCACAAGTTCGTGAGGTCGAATCCGCAAAGTGTTGGGATCTTATTTTATTTTCAAATTAAAAAGCAAATTCCCTTTCTCCAACCCACATCCCCCCGCCTAATCGGTAAACCAAGAGGCAAGTTGACCAAACTGTCGATCTTAAGCAGTTTAGACGGCTCGCTTTTCCAATGGGTTCGGTTCGGTTTCGGTTCCCATGGTATCCTTTCACTGATTGAGTGGTTCGGTTCTAGTTTTCTACAAAAATCGAGCCGGACCGAACCGTTACACCCCTAAATAAGTTGTAAAAACATAACATAACTCATTCATTACTTTTATGTCACCTTGTAGATTATAACCTTCATAATAGGAACCAAACAAGAAAGTTTGAGGGTTGAATTTGAATCTTTTAATGGTTTTATGTACCAAAATAGAAATGAAATAAAAATTGATCATCTAGAAAAAATATTAAAAATTGAAGGCCCAAAACTATATCTAAACTATATATATATGTATTGATATTATATGCTTTCTAATTATTCCTCAAGTAGACAAAATCTTGGTCAAGAAAAGCTCCTAAAAGCATTGGTTTCTTCCTTGGATCTTTGTGGATAG

mRNA sequence

ATGACTCGTACTGGCCTCATCAACCAAATCTTCCCCGCCAGCCGCCTCCTAGCCTTCTGTGCGCTCTCCGATTCCGGCGACATTCACTATGCACATCTCCTTTTCGCTCAAATTGAACACCCCAATTGCTTTATCTGGAACACAATGATCAAGGGTTATTGCAGAACTAAATACCCTTCAATGGGGTTCTCATTTTTCCGGCAAATGATTCGGAATCGCGTTGAATTGGATTGTGGGAGCTTTGTTTTCGCACTCAAGGCATGCGCCCAATTCGCGGGGAAAATTTTGGGAATGGCGGTGCATTCTGTGATTTGGAAACTGGGGTTTGATTCTGAATTGTTAGTCCAAAATGGATTGATTCAAAACTATGTTGAAACTAGGTGTCTTGGTTTTGCACGCCAAGTGTTTGATGAATGTTCTGTGAAGGATGTTGTTACTTGGACGACGATGATCAATGGACAAAATCTTGGTCAAGAAAAGCTCCTAAAAGCATTGGTTTCTTCCTTGGATCTTTGTGGATAG

Coding sequence (CDS)

ATGACTCGTACTGGCCTCATCAACCAAATCTTCCCCGCCAGCCGCCTCCTAGCCTTCTGTGCGCTCTCCGATTCCGGCGACATTCACTATGCACATCTCCTTTTCGCTCAAATTGAACACCCCAATTGCTTTATCTGGAACACAATGATCAAGGGTTATTGCAGAACTAAATACCCTTCAATGGGGTTCTCATTTTTCCGGCAAATGATTCGGAATCGCGTTGAATTGGATTGTGGGAGCTTTGTTTTCGCACTCAAGGCATGCGCCCAATTCGCGGGGAAAATTTTGGGAATGGCGGTGCATTCTGTGATTTGGAAACTGGGGTTTGATTCTGAATTGTTAGTCCAAAATGGATTGATTCAAAACTATGTTGAAACTAGGTGTCTTGGTTTTGCACGCCAAGTGTTTGATGAATGTTCTGTGAAGGATGTTGTTACTTGGACGACGATGATCAATGGACAAAATCTTGGTCAAGAAAAGCTCCTAAAAGCATTGGTTTCTTCCTTGGATCTTTGTGGATAG

Protein sequence

MTRTGLINQIFPASRLLAFCALSDSGDIHYAHLLFAQIEHPNCFIWNTMIKGYCRTKYPSMGFSFFRQMIRNRVELDCGSFVFALKACAQFAGKILGMAVHSVIWKLGFDSELLVQNGLIQNYVETRCLGFARQVFDECSVKDVVTWTTMINGQNLGQEKLLKALVSSLDLCG

Homology

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BLAST of HG10022891 vs. NCBI nr
Match: XP_038898970.1 (pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Benincasa hispida])

HSP 1 Score: 301.6 bits (771), Expect = 4.4e-78
Identity = 142/153 (92.81%), Postives = 146/153 (95.42%), Query Frame = 0


Query: 1   MTRTGLINQIFPASRLLAFCALSDSGDIHYAHLLFAQIEHPNCFIWNTMIKGYCRTKYPS 60
           MTRTGL+NQIFPASRLLAFCALSDSGDIHYAHLLFAQIEHPNCF WNTMIKGYCR  +PS
Sbjct: 75  MTRTGLMNQIFPASRLLAFCALSDSGDIHYAHLLFAQIEHPNCFFWNTMIKGYCRANHPS 134

Query: 61  MGFSFFRQMIRNRVELDCGSFVFALKACAQFAGKILGMAVHSVIWKLGFDSELLVQNGLI 120
           MGFSFFRQMIRNRV+LDCGSFVFALKACAQFAGKI+G AVHSVIWKLGFDSELLVQNGLI
Sbjct: 135 MGFSFFRQMIRNRVQLDCGSFVFALKACAQFAGKIVGTAVHSVIWKLGFDSELLVQNGLI 194

Query: 121 QNYVETRCLGFARQVFDECSVKDVVTWTTMING 154
           QNYVE  CLGFARQVFDE SVKDVVTWTTMING
Sbjct: 195 QNYVEIGCLGFARQVFDESSVKDVVTWTTMING 227

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BLAST of HG10022891 vs. NCBI nr
Match: XP_008451419.1 (PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Cucumis melo])

HSP 1 Score: 287.0 bits (733), Expect = 1.1e-73
Identity = 133/153 (86.93%), Postives = 141/153 (92.16%), Query Frame = 0


Query: 1   MTRTGLINQIFPASRLLAFCALSDSGDIHYAHLLFAQIEHPNCFIWNTMIKGYCRTKYPS 60
           MT TGL++QIFPASRLLAFCALSDSGDIHYAHL+F Q EHPNCF WNTMIKGYC+  YPS
Sbjct: 75  MTCTGLMSQIFPASRLLAFCALSDSGDIHYAHLIFDQTEHPNCFFWNTMIKGYCQANYPS 134

Query: 61  MGFSFFRQMIRNRVELDCGSFVFALKACAQFAGKILGMAVHSVIWKLGFDSELLVQNGLI 120
           +GFSFFRQMIRNR E DCGSFVFALKAC QFA KI+GMAVHSVIWKLGFDSELLV+NGLI
Sbjct: 135 LGFSFFRQMIRNRAEFDCGSFVFALKACGQFAEKIVGMAVHSVIWKLGFDSELLVRNGLI 194

Query: 121 QNYVETRCLGFARQVFDECSVKDVVTWTTMING 154
           QNYVET CLGFARQVFDE S+KDVVTWTTMING
Sbjct: 195 QNYVETGCLGFARQVFDESSIKDVVTWTTMING 227

[Close]

BLAST of HG10022891 vs. NCBI nr
Match: KAA0057547.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK18268.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 286.6 bits (732), Expect = 1.5e-73
Identity = 133/153 (86.93%), Postives = 140/153 (91.50%), Query Frame = 0


Query: 1   MTRTGLINQIFPASRLLAFCALSDSGDIHYAHLLFAQIEHPNCFIWNTMIKGYCRTKYPS 60
           MT TGL++QIFPASRLLAFCALSDSGDIHYAHL+F Q EHPNCF WNTMIKGYC+  YPS
Sbjct: 75  MTCTGLMSQIFPASRLLAFCALSDSGDIHYAHLIFDQTEHPNCFFWNTMIKGYCQANYPS 134

Query: 61  MGFSFFRQMIRNRVELDCGSFVFALKACAQFAGKILGMAVHSVIWKLGFDSELLVQNGLI 120
           MGFSFFRQMIRNR E DCGSFVFALKAC QFA KI+GMAVHSVIWKLGFDSEL V+NGLI
Sbjct: 135 MGFSFFRQMIRNRAEFDCGSFVFALKACGQFAEKIVGMAVHSVIWKLGFDSELFVRNGLI 194

Query: 121 QNYVETRCLGFARQVFDECSVKDVVTWTTMING 154
           QNYVET CLGFARQVFDE S+KDVVTWTTMING
Sbjct: 195 QNYVETGCLGFARQVFDESSIKDVVTWTTMING 227

[Close]

BLAST of HG10022891 vs. NCBI nr
Match: KAG6593151.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 276.9 bits (707), Expect = 1.2e-70
Identity = 129/153 (84.31%), Postives = 140/153 (91.50%), Query Frame = 0


Query: 1   MTRTGLINQIFPASRLLAFCALSDSGDIHYAHLLFAQIEHPNCFIWNTMIKGYCRTKYPS 60
           MT TGL+NQIFPASR++AFCALSD+GDIHYAHL+FAQIE+PNCF+WNTMIKGYCR K PS
Sbjct: 44  MTCTGLMNQIFPASRVVAFCALSDAGDIHYAHLVFAQIENPNCFLWNTMIKGYCRAKCPS 103

Query: 61  MGFSFFRQMIRNRVELDCGSFVFALKACAQFAGKILGMAVHSVIWKLGFDSELLVQNGLI 120
           MGF FFRQMIRNRVELDCGSFV ALK C QF+GK + MAVHSV+WKLGF SELLVQNGLI
Sbjct: 104 MGFLFFRQMIRNRVELDCGSFVSALKVCGQFSGKAIRMAVHSVVWKLGFGSELLVQNGLI 163

Query: 121 QNYVETRCLGFARQVFDECSVKDVVTWTTMING 154
           Q YVET C+GFARQVFDE SVKDVVTWTTMING
Sbjct: 164 QYYVETGCIGFARQVFDESSVKDVVTWTTMING 196

[Close]

BLAST of HG10022891 vs. NCBI nr
Match: KAG7025550.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 276.9 bits (707), Expect = 1.2e-70
Identity = 129/153 (84.31%), Postives = 140/153 (91.50%), Query Frame = 0


Query: 1   MTRTGLINQIFPASRLLAFCALSDSGDIHYAHLLFAQIEHPNCFIWNTMIKGYCRTKYPS 60
           MT TGL+NQIFPASR++AFCALSD+GDIHYAHL+FAQIE+PNCF+WNTMIKGYCR K PS
Sbjct: 75  MTCTGLMNQIFPASRVVAFCALSDAGDIHYAHLVFAQIENPNCFLWNTMIKGYCRAKCPS 134

Query: 61  MGFSFFRQMIRNRVELDCGSFVFALKACAQFAGKILGMAVHSVIWKLGFDSELLVQNGLI 120
           MGF FFRQMIRNRVELDCGSFV ALK C QF+GK + MAVHSV+WKLGF SELLVQNGLI
Sbjct: 135 MGFLFFRQMIRNRVELDCGSFVSALKVCGQFSGKAIRMAVHSVVWKLGFGSELLVQNGLI 194

Query: 121 QNYVETRCLGFARQVFDECSVKDVVTWTTMING 154
           Q YVET C+GFARQVFDE SVKDVVTWTTMING
Sbjct: 195 QYYVETGCIGFARQVFDESSVKDVVTWTTMING 227

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BLAST of HG10022891 vs. ExPASy Swiss-Prot
Match: Q9FG16 (Pentatricopeptide repeat-containing protein At5g06540 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H88 PE=3 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 4.2e-23
Identity = 53/158 (33.54%), Postives = 94/158 (59.49%), Query Frame = 0


Query: 1   MTRTGLINQIFPASRLLAFCALSDSGD-----IHYAHLLFAQIEHPNCFIWNTMIKGYCR 60
           + RT LI+ +F ASRLLA C    + +     + YA+ +F+QI++PN F++N +I+ +  
Sbjct: 35  LLRTHLISDVFVASRLLALCVDDSTFNKPTNLLGYAYGIFSQIQNPNLFVFNLLIRCFST 94

Query: 61  TKYPSMGFSFFRQMIRNRVELDCGSFVFALKACAQFAGKILGMAVHSVIWKLGFDSELLV 120
              PS  F F+ QM+++R+  D  +F F +KA ++    ++G   HS I + GF +++ V
Sbjct: 95  GAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEMECVLVGEQTHSQIVRFGFQNDVYV 154

Query: 121 QNGLIQNYVETRCLGFARQVFDECSVKDVVTWTTMING 154
           +N L+  Y     +  A ++F +   +DVV+WT+M+ G
Sbjct: 155 ENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVAG 192

[Close]

BLAST of HG10022891 vs. ExPASy Swiss-Prot
Match: O49399 (Pentatricopeptide repeat-containing protein At4g18840 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E101 PE=3 SV=2)

HSP 1 Score: 104.0 bits (258), Expect = 1.8e-21
Identity = 53/153 (34.64%), Postives = 85/153 (55.56%), Query Frame = 0


Query: 1   MTRTGLINQIFPASRLLAFCALS-DSGDIHYAHLLFAQIEHPNCFIWNTMIKGYCRTKYP 60
           M +TGL +  F AS+L+AF A + +   + YAH +  +I  PN F  N++I+ Y  +  P
Sbjct: 62  MLKTGLFHDTFSASKLVAFAATNPEPKTVSYAHSILNRIGSPNGFTHNSVIRAYANSSTP 121

Query: 61  SMGFSFFRQMIRNRVELDCGSFVFALKACAQFAGKILGMAVHSVIWKLGFDSELLVQNGL 120
            +  + FR+M+   V  D  SF F LKACA F G   G  +H +  K G  +++ V+N L
Sbjct: 122 EVALTVFREMLLGPVFPDKYSFTFVLKACAAFCGFEEGRQIHGLFIKSGLVTDVFVENTL 181

Query: 121 IQNYVETRCLGFARQVFDECSVKDVVTWTTMIN 153
           +  Y  +     AR+V D   V+D V+W ++++
Sbjct: 182 VNVYGRSGYFEIARKVLDRMPVRDAVSWNSLLS 214

[Close]

BLAST of HG10022891 vs. ExPASy Swiss-Prot
Match: Q9LUJ2 (Pentatricopeptide repeat-containing protein At3g22690 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H56 PE=3 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 2.5e-20
Identity = 54/155 (34.84%), Postives = 89/155 (57.42%), Query Frame = 0


Query: 1   MTRTGLINQIFPASRLLA-FCALSDSGDIHYAHLLFAQIE-HPNCFIWNTMIKGYCRTKY 60
           +T+ GL N +   ++L+A  C L     + +A  +F   E +  CF++N++I+GY  +  
Sbjct: 55  LTKQGLDNDVSTITKLVARSCELGTRESLSFAKEVFENSESYGTCFMYNSLIRGYASSGL 114

Query: 61  PSMGFSFFRQMIRNRVELDCGSFVFALKACAQFAGKILGMAVHSVIWKLGFDSELLVQNG 120
            +     F +M+ + +  D  +F F L ACA+   K  G+ +H +I K+G+  +L VQN 
Sbjct: 115 CNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNS 174

Query: 121 LIQNYVETRCLGFARQVFDECSVKDVVTWTTMING 154
           L+  Y E   L  AR+VFDE S ++VV+WT+MI G
Sbjct: 175 LVHFYAECGELDSARKVFDEMSERNVVSWTSMICG 209

[Close]

BLAST of HG10022891 vs. ExPASy Swiss-Prot
Match: Q9SJG6 (Pentatricopeptide repeat-containing protein At2g42920, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-E75 PE=2 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 3.3e-20
Identity = 54/155 (34.84%), Postives = 87/155 (56.13%), Query Frame = 0


Query: 1   MTRTGLINQIFPASRLLAFCALSDSGDIHYAHLLFAQIEHPNCFIWNTMIKGYCRTKYPS 60
           + +TGLI+    ASR+LAFC  S S D++YA+L+F +I H N F+WNT+I+G+ R+ +P 
Sbjct: 48  LIKTGLISDTVTASRVLAFCCASPS-DMNYAYLVFTRINHKNPFVWNTIIRGFSRSSFPE 107

Query: 61  MGFSFFRQMIRN--RVELDCGSFVFALKACAQFAGKILGMAVHSVIWKLGFDSELLVQNG 120
           M  S F  M+ +   V+    ++    KA  +      G  +H ++ K G + +  ++N 
Sbjct: 108 MAISIFIDMLCSSPSVKPQRLTYPSVFKAYGRLGQARDGRQLHGMVIKEGLEDDSFIRNT 167

Query: 121 LIQNYVETRCLGFARQVFDECSVKDVVTWTTMING 154
           ++  YV   CL  A ++F      DVV W +MI G
Sbjct: 168 MLHMYVTCGCLIEAWRIFLGMIGFDVVAWNSMIMG 201

[Close]

BLAST of HG10022891 vs. ExPASy Swiss-Prot
Match: O80647 (Pentatricopeptide repeat-containing protein At2g39620 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E33 PE=3 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 4.3e-20
Identity = 51/149 (34.23%), Postives = 85/149 (57.05%), Query Frame = 0


Query: 6   LINQIFPASRLLAFCALSDSGDIHYAHLLFAQIEHPNCFIWNTMIKGYCRTKYPSMGFSF 65
           +++ + P ++L+   +L    D+  + ++F  +  P   +WN+MI+GY R         F
Sbjct: 29  IVSGLKPHNQLINAYSLFQRQDL--SRVIFDSVRDPGVVLWNSMIRGYTRAGLHREALGF 88

Query: 66  FRQMIRNR-VELDCGSFVFALKACAQFAGKILGMAVHSVIWKLGFDSELLVQNGLIQNYV 125
           F  M   + ++ D  SF FALKACA       G+ +H +I ++G +S++ +   L++ Y 
Sbjct: 89  FGYMSEEKGIDPDKYSFTFALKACAGSMDFKKGLRIHDLIAEMGLESDVYIGTALVEMYC 148

Query: 126 ETRCLGFARQVFDECSVKDVVTWTTMING 154
           + R L  ARQVFD+  VKDVVTW TM++G
Sbjct: 149 KARDLVSARQVFDKMHVKDVVTWNTMVSG 175

[Close]

BLAST of HG10022891 vs. ExPASy TrEMBL
Match: A0A1S3BSJ4 (LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103492719 PE=4 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 5.4e-74
Identity = 133/153 (86.93%), Postives = 141/153 (92.16%), Query Frame = 0


Query: 1   MTRTGLINQIFPASRLLAFCALSDSGDIHYAHLLFAQIEHPNCFIWNTMIKGYCRTKYPS 60
           MT TGL++QIFPASRLLAFCALSDSGDIHYAHL+F Q EHPNCF WNTMIKGYC+  YPS
Sbjct: 75  MTCTGLMSQIFPASRLLAFCALSDSGDIHYAHLIFDQTEHPNCFFWNTMIKGYCQANYPS 134

Query: 61  MGFSFFRQMIRNRVELDCGSFVFALKACAQFAGKILGMAVHSVIWKLGFDSELLVQNGLI 120
           +GFSFFRQMIRNR E DCGSFVFALKAC QFA KI+GMAVHSVIWKLGFDSELLV+NGLI
Sbjct: 135 LGFSFFRQMIRNRAEFDCGSFVFALKACGQFAEKIVGMAVHSVIWKLGFDSELLVRNGLI 194

Query: 121 QNYVETRCLGFARQVFDECSVKDVVTWTTMING 154
           QNYVET CLGFARQVFDE S+KDVVTWTTMING
Sbjct: 195 QNYVETGCLGFARQVFDESSIKDVVTWTTMING 227

[Close]

BLAST of HG10022891 vs. ExPASy TrEMBL
Match: A0A5A7USA2 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G002100 PE=4 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 7.0e-74
Identity = 133/153 (86.93%), Postives = 140/153 (91.50%), Query Frame = 0


Query: 1   MTRTGLINQIFPASRLLAFCALSDSGDIHYAHLLFAQIEHPNCFIWNTMIKGYCRTKYPS 60
           MT TGL++QIFPASRLLAFCALSDSGDIHYAHL+F Q EHPNCF WNTMIKGYC+  YPS
Sbjct: 75  MTCTGLMSQIFPASRLLAFCALSDSGDIHYAHLIFDQTEHPNCFFWNTMIKGYCQANYPS 134

Query: 61  MGFSFFRQMIRNRVELDCGSFVFALKACAQFAGKILGMAVHSVIWKLGFDSELLVQNGLI 120
           MGFSFFRQMIRNR E DCGSFVFALKAC QFA KI+GMAVHSVIWKLGFDSEL V+NGLI
Sbjct: 135 MGFSFFRQMIRNRAEFDCGSFVFALKACGQFAEKIVGMAVHSVIWKLGFDSELFVRNGLI 194

Query: 121 QNYVETRCLGFARQVFDECSVKDVVTWTTMING 154
           QNYVET CLGFARQVFDE S+KDVVTWTTMING
Sbjct: 195 QNYVETGCLGFARQVFDESSIKDVVTWTTMING 227

[Close]

BLAST of HG10022891 vs. ExPASy TrEMBL
Match: A0A6J1HB35 (pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111461192 PE=4 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 1.6e-70
Identity = 129/153 (84.31%), Postives = 139/153 (90.85%), Query Frame = 0


Query: 1   MTRTGLINQIFPASRLLAFCALSDSGDIHYAHLLFAQIEHPNCFIWNTMIKGYCRTKYPS 60
           MT TGL+NQIFPASR++AFCALSD+GDIHYAHL+FAQIE+PNCF+WNTMIKGYCR K PS
Sbjct: 75  MTCTGLMNQIFPASRVVAFCALSDAGDIHYAHLVFAQIENPNCFLWNTMIKGYCRAKCPS 134

Query: 61  MGFSFFRQMIRNRVELDCGSFVFALKACAQFAGKILGMAVHSVIWKLGFDSELLVQNGLI 120
           MGF FFRQMIRNRVELDCGSFV ALK C QFAGK + MAVHSV+WKLGF SELLVQNGLI
Sbjct: 135 MGFLFFRQMIRNRVELDCGSFVSALKVCGQFAGKAVRMAVHSVVWKLGFGSELLVQNGLI 194

Query: 121 QNYVETRCLGFARQVFDECSVKDVVTWTTMING 154
           Q YVE  C+GFARQVFDE SVKDVVTWTTMING
Sbjct: 195 QYYVEIGCIGFARQVFDESSVKDVVTWTTMING 227

[Close]

BLAST of HG10022891 vs. ExPASy TrEMBL
Match: A0A0A0K8Z0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G390210 PE=4 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 2.8e-70
Identity = 129/153 (84.31%), Postives = 137/153 (89.54%), Query Frame = 0


Query: 1   MTRTGLINQIFPASRLLAFCALSDSGDIHYAHLLFAQIEHPNCFIWNTMIKGYCRTKYPS 60
           +T TGL+NQIFPASRLLAFCALSDSGDIHYAHL+F Q E PNCF WNTMIKGYC+  +PS
Sbjct: 75  ITCTGLMNQIFPASRLLAFCALSDSGDIHYAHLIFDQTELPNCFFWNTMIKGYCKANHPS 134

Query: 61  MGFSFFRQMIRNRVELDCGSFVFALKACAQFAGKILGMAVHSVIWKLGFDSELLVQNGLI 120
           MGFSFFRQMIRNR E D GSFVFALKAC QFA KI+GMAVHSVIWK GFDS+L VQNGLI
Sbjct: 135 MGFSFFRQMIRNRAEFDSGSFVFALKACGQFAEKIVGMAVHSVIWKRGFDSDLFVQNGLI 194

Query: 121 QNYVETRCLGFARQVFDECSVKDVVTWTTMING 154
           QNYVET CLGFARQ+FDE SVKDVVTWTTMING
Sbjct: 195 QNYVETGCLGFARQMFDESSVKDVVTWTTMING 227

[Close]

BLAST of HG10022891 vs. ExPASy TrEMBL
Match: A0A6J1KS94 (pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111497776 PE=4 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 1.4e-69
Identity = 128/153 (83.66%), Postives = 138/153 (90.20%), Query Frame = 0


Query: 1   MTRTGLINQIFPASRLLAFCALSDSGDIHYAHLLFAQIEHPNCFIWNTMIKGYCRTKYPS 60
           M  TGL+NQIFPASR++AFCALSD+GDIHYAHL+FAQIE+PNCF+WNTMIKGYCR K PS
Sbjct: 75  MICTGLMNQIFPASRVVAFCALSDAGDIHYAHLVFAQIENPNCFLWNTMIKGYCRAKCPS 134

Query: 61  MGFSFFRQMIRNRVELDCGSFVFALKACAQFAGKILGMAVHSVIWKLGFDSELLVQNGLI 120
           MGF FFRQMIRNRVELDCGSFV ALKAC  FAGK + MAVHSV+WKLGF S LLVQNGLI
Sbjct: 135 MGFLFFRQMIRNRVELDCGSFVSALKACGHFAGKAIRMAVHSVVWKLGFGSGLLVQNGLI 194

Query: 121 QNYVETRCLGFARQVFDECSVKDVVTWTTMING 154
           Q YVET C+GFARQVFDE SVKDVVTWTTMING
Sbjct: 195 QFYVETGCIGFARQVFDESSVKDVVTWTTMING 227

[Close]

BLAST of HG10022891 vs. TAIR 10
Match: AT5G06540.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 109.4 bits (272), Expect = 3.0e-24
Identity = 53/158 (33.54%), Postives = 94/158 (59.49%), Query Frame = 0


Query: 1   MTRTGLINQIFPASRLLAFCALSDSGD-----IHYAHLLFAQIEHPNCFIWNTMIKGYCR 60
           + RT LI+ +F ASRLLA C    + +     + YA+ +F+QI++PN F++N +I+ +  
Sbjct: 35  LLRTHLISDVFVASRLLALCVDDSTFNKPTNLLGYAYGIFSQIQNPNLFVFNLLIRCFST 94

Query: 61  TKYPSMGFSFFRQMIRNRVELDCGSFVFALKACAQFAGKILGMAVHSVIWKLGFDSELLV 120
              PS  F F+ QM+++R+  D  +F F +KA ++    ++G   HS I + GF +++ V
Sbjct: 95  GAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEMECVLVGEQTHSQIVRFGFQNDVYV 154

Query: 121 QNGLIQNYVETRCLGFARQVFDECSVKDVVTWTTMING 154
           +N L+  Y     +  A ++F +   +DVV+WT+M+ G
Sbjct: 155 ENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVAG 192

[Close]

BLAST of HG10022891 vs. TAIR 10
Match: AT4G18840.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 104.0 bits (258), Expect = 1.2e-22
Identity = 53/153 (34.64%), Postives = 85/153 (55.56%), Query Frame = 0


Query: 1   MTRTGLINQIFPASRLLAFCALS-DSGDIHYAHLLFAQIEHPNCFIWNTMIKGYCRTKYP 60
           M +TGL +  F AS+L+AF A + +   + YAH +  +I  PN F  N++I+ Y  +  P
Sbjct: 62  MLKTGLFHDTFSASKLVAFAATNPEPKTVSYAHSILNRIGSPNGFTHNSVIRAYANSSTP 121

Query: 61  SMGFSFFRQMIRNRVELDCGSFVFALKACAQFAGKILGMAVHSVIWKLGFDSELLVQNGL 120
            +  + FR+M+   V  D  SF F LKACA F G   G  +H +  K G  +++ V+N L
Sbjct: 122 EVALTVFREMLLGPVFPDKYSFTFVLKACAAFCGFEEGRQIHGLFIKSGLVTDVFVENTL 181

Query: 121 IQNYVETRCLGFARQVFDECSVKDVVTWTTMIN 153
           +  Y  +     AR+V D   V+D V+W ++++
Sbjct: 182 VNVYGRSGYFEIARKVLDRMPVRDAVSWNSLLS 214

[Close]

BLAST of HG10022891 vs. TAIR 10
Match: AT3G22690.1 (CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881), Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G29760.1); Has 49784 Blast hits to 14716 proteins in 280 species: Archae - 2; Bacteria - 10; Metazoa - 107; Fungi - 167; Plants - 48594; Viruses - 0; Other Eukaryotes - 904 (source: NCBI BLink). )

HSP 1 Score: 100.1 bits (248), Expect = 1.8e-21
Identity = 54/155 (34.84%), Postives = 89/155 (57.42%), Query Frame = 0


Query: 1   MTRTGLINQIFPASRLLA-FCALSDSGDIHYAHLLFAQIE-HPNCFIWNTMIKGYCRTKY 60
           +T+ GL N +   ++L+A  C L     + +A  +F   E +  CF++N++I+GY  +  
Sbjct: 55  LTKQGLDNDVSTITKLVARSCELGTRESLSFAKEVFENSESYGTCFMYNSLIRGYASSGL 114

Query: 61  PSMGFSFFRQMIRNRVELDCGSFVFALKACAQFAGKILGMAVHSVIWKLGFDSELLVQNG 120
            +     F +M+ + +  D  +F F L ACA+   K  G+ +H +I K+G+  +L VQN 
Sbjct: 115 CNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNS 174

Query: 121 LIQNYVETRCLGFARQVFDECSVKDVVTWTTMING 154
           L+  Y E   L  AR+VFDE S ++VV+WT+MI G
Sbjct: 175 LVHFYAECGELDSARKVFDEMSERNVVSWTSMICG 209

[Close]

BLAST of HG10022891 vs. TAIR 10
Match: AT3G22690.2 (INVOLVED IN: photosystem II assembly, regulation of chlorophyll biosynthetic process, photosystem I assembly, thylakoid membrane organization, RNA modification; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G29760.1). )

HSP 1 Score: 100.1 bits (248), Expect = 1.8e-21
Identity = 54/155 (34.84%), Postives = 89/155 (57.42%), Query Frame = 0


Query: 1   MTRTGLINQIFPASRLLA-FCALSDSGDIHYAHLLFAQIE-HPNCFIWNTMIKGYCRTKY 60
           +T+ GL N +   ++L+A  C L     + +A  +F   E +  CF++N++I+GY  +  
Sbjct: 55  LTKQGLDNDVSTITKLVARSCELGTRESLSFAKEVFENSESYGTCFMYNSLIRGYASSGL 114

Query: 61  PSMGFSFFRQMIRNRVELDCGSFVFALKACAQFAGKILGMAVHSVIWKLGFDSELLVQNG 120
            +     F +M+ + +  D  +F F L ACA+   K  G+ +H +I K+G+  +L VQN 
Sbjct: 115 CNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNS 174

Query: 121 LIQNYVETRCLGFARQVFDECSVKDVVTWTTMING 154
           L+  Y E   L  AR+VFDE S ++VV+WT+MI G
Sbjct: 175 LVHFYAECGELDSARKVFDEMSERNVVSWTSMICG 209

[Close]

BLAST of HG10022891 vs. TAIR 10
Match: AT2G42920.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 99.8 bits (247), Expect = 2.3e-21
Identity = 54/155 (34.84%), Postives = 87/155 (56.13%), Query Frame = 0


Query: 1   MTRTGLINQIFPASRLLAFCALSDSGDIHYAHLLFAQIEHPNCFIWNTMIKGYCRTKYPS 60
           + +TGLI+    ASR+LAFC  S S D++YA+L+F +I H N F+WNT+I+G+ R+ +P 
Sbjct: 48  LIKTGLISDTVTASRVLAFCCASPS-DMNYAYLVFTRINHKNPFVWNTIIRGFSRSSFPE 107

Query: 61  MGFSFFRQMIRN--RVELDCGSFVFALKACAQFAGKILGMAVHSVIWKLGFDSELLVQNG 120
           M  S F  M+ +   V+    ++    KA  +      G  +H ++ K G + +  ++N 
Sbjct: 108 MAISIFIDMLCSSPSVKPQRLTYPSVFKAYGRLGQARDGRQLHGMVIKEGLEDDSFIRNT 167

Query: 121 LIQNYVETRCLGFARQVFDECSVKDVVTWTTMING 154
           ++  YV   CL  A ++F      DVV W +MI G
Sbjct: 168 MLHMYVTCGCLIEAWRIFLGMIGFDVVAWNSMIMG 201

The following BLAST results are available for this feature:

BLAST of HG10022891 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038898970.1	4.4e-78	92.81	pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Benin...	[more]
XP_008451419.1	1.1e-73	86.93	PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At2g...	[more]
KAA0057547.1	1.5e-73	86.93	pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK18268...	[more]
KAG6593151.1	1.2e-70	84.31	Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a...	[more]
KAG7025550.1	1.2e-70	84.31	Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a...	[more]

BLAST of HG10022891 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FG16	4.2e-23	33.54	Pentatricopeptide repeat-containing protein At5g06540 OS=Arabidopsis thaliana OX...	[more]
O49399	1.8e-21	34.64	Pentatricopeptide repeat-containing protein At4g18840 OS=Arabidopsis thaliana OX...	[more]
Q9LUJ2	2.5e-20	34.84	Pentatricopeptide repeat-containing protein At3g22690 OS=Arabidopsis thaliana OX...	[more]
Q9SJG6	3.3e-20	34.84	Pentatricopeptide repeat-containing protein At2g42920, chloroplastic OS=Arabidop...	[more]
O80647	4.3e-20	34.23	Pentatricopeptide repeat-containing protein At2g39620 OS=Arabidopsis thaliana OX...	[more]

BLAST of HG10022891 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BSJ4	5.4e-74	86.93	LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At2g22410, mito...	[more]
A0A5A7USA2	7.0e-74	86.93	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A6J1HB35	1.6e-70	84.31	pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like OS=Cuc...	[more]
A0A0A0K8Z0	2.8e-70	84.31	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G390210 PE=4 SV=1	[more]
A0A6J1KS94	1.4e-69	83.66	pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like OS=Cuc...	[more]

BLAST of HG10022891 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G06540.1	3.0e-24	33.54	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT4G18840.1	1.2e-22	34.64	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]
AT3G22690.1	1.8e-21	34.84	CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012...	[more]
AT3G22690.2	1.8e-21	34.84	INVOLVED IN: photosystem II assembly, regulation of chlorophyll biosynthetic pro...	[more]
AT2G42920.1	2.3e-21	34.84	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 5..101 e-value: 1.4E-14 score: 55.8
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 41..89 e-value: 8.5E-9 score: 35.5
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 45..78 e-value: 3.1E-8 score: 31.3
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 42..76 score: 10.676364
None	No IPR available	PANTHER	PTHR47928	REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED	coord: 2..158
None	No IPR available	PANTHER	PTHR47928:SF69	PENTATRICOPEPTIDE REPEAT PROTEIN	coord: 2..158

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10022891.1	HG10022891.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding