HG10022584 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10022584
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionRNase H domain-containing protein
LocationChr05: 25838295 .. 25838732 (-)
RNA-Seq ExpressionHG10022584
SyntenyHG10022584
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGATGGGAGCTGTTTTGCATGATGATTGTGGGAGAGCCATTGTTACCCATGCTCTTGTTTGTCCAGGTTGTGTATCGGCAAAAGATGGTGAAATTTTTGTTTTGACAACTGGTTTGAAGTTGGTTGAAGCTCATGGATACTCGGGATTTTGGGTGGAAATGGATGTCGAAATTGTAGTGAAAAAGATCCATGTTTTTTTTTCGTTAGTCCCTAATGGTATTATTTATGTTGAAGCATTCTCCTTAATGCAAAGGTTGGTGGTTGTGAGCTTGGTTTATACTCTTAGAAGTTATAATAGAGTGGCCCATAATTTGGCCAATCAAGCTATTGTAGCTGATTCTTCTTGTGTTTGGATTGATTGTATTTTCCATGGCTCTCAAACATTGTTGGGACTAACCCTAGACCCTTACTCCTCAAAACCCTTTAAACCCTAA

mRNA sequence

ATGGGGATGGGAGCTGTTTTGCATGATGATTGTGGGAGAGCCATTGTTACCCATGCTCTTGTTTGTCCAGGTTGTGTATCGGCAAAAGATGGTGAAATTTTTGTTTTGACAACTGGTTTGAAGTTGGTTGAAGCTCATGGATACTCGGGATTTTGGGTGGAAATGGATGTCGAAATTGTAGTGAAAAAGATCCATGTTTTTTTTTCGTTAGTCCCTAATGGTATTATTTATGTTGAAGCATTCTCCTTAATGCAAAGGTTGGTGGTTGTGAGCTTGGTTTATACTCTTAGAAGTTATAATAGAGTGGCCCATAATTTGGCCAATCAAGCTATTGTAGCTGATTCTTCTTGTGTTTGGATTGATTGTATTTTCCATGGCTCTCAAACATTGTTGGGACTAACCCTAGACCCTTACTCCTCAAAACCCTTTAAACCCTAA

Coding sequence (CDS)

ATGGGGATGGGAGCTGTTTTGCATGATGATTGTGGGAGAGCCATTGTTACCCATGCTCTTGTTTGTCCAGGTTGTGTATCGGCAAAAGATGGTGAAATTTTTGTTTTGACAACTGGTTTGAAGTTGGTTGAAGCTCATGGATACTCGGGATTTTGGGTGGAAATGGATGTCGAAATTGTAGTGAAAAAGATCCATGTTTTTTTTTCGTTAGTCCCTAATGGTATTATTTATGTTGAAGCATTCTCCTTAATGCAAAGGTTGGTGGTTGTGAGCTTGGTTTATACTCTTAGAAGTTATAATAGAGTGGCCCATAATTTGGCCAATCAAGCTATTGTAGCTGATTCTTCTTGTGTTTGGATTGATTGTATTTTCCATGGCTCTCAAACATTGTTGGGACTAACCCTAGACCCTTACTCCTCAAAACCCTTTAAACCCTAA

Protein sequence

MGMGAVLHDDCGRAIVTHALVCPGCVSAKDGEIFVLTTGLKLVEAHGYSGFWVEMDVEIVVKKIHVFFSLVPNGIIYVEAFSLMQRLVVVSLVYTLRSYNRVAHNLANQAIVADSSCVWIDCIFHGSQTLLGLTLDPYSSKPFKP
Homology
BLAST of HG10022584 vs. NCBI nr
Match: XP_024199929.1 (uncharacterized protein LOC112203151 [Rosa chinensis])

HSP 1 Score: 58.9 bits (141), Expect = 4.1e-05
Identity = 39/121 (32.23%), Postives = 56/121 (46.28%), Query Frame = 0

Query: 2   GMGAVLHDDCGRAIVTHALVCPGCVSAKDGEIFVLTTGLKLVEAHGYSGFWVEMD-VEIV 61
           G+G VL  D GR +   A   P   S K GE++ +  GL L+ +       +E D  E +
Sbjct: 136 GVGGVLRTDNGRVVAAFAGPIPHMASPKQGELYAIRAGLDLINSLQLQQVVIESDCTEAI 195

Query: 62  VKKIHVFFSLVPNGIIYVEAFSLMQRLVVVSLVYTLRSYNRVAHNLANQAIVADSSCVWI 121
            +      +L+ NG +  +  S M  +  V L Y  RS NR+AH LA     A    VW+
Sbjct: 196 TEASCEDHTLLANGGLIDDIQSAMATIPQVQLCYAPRSCNRIAHRLAGIGFEATHHIVWL 255

BLAST of HG10022584 vs. NCBI nr
Match: KAG2635063.1 (hypothetical protein PVAP13_2NG311303 [Panicum virgatum])

HSP 1 Score: 56.6 bits (135), Expect = 2.0e-04
Identity = 37/119 (31.09%), Postives = 55/119 (46.22%), Query Frame = 0

Query: 4   GAVLHDDCGRAIVTHALVCPGCVSAKDGEIFVLTTGLKLVEAHGYSGFWVEMD-VEIVVK 63
           GA++ D  G+AI            A   E F L  GL+L E  G +   V  D +++V  
Sbjct: 340 GAIIRDHTGQAIALAQRFLQHVGDAPMAEAFALLDGLRLAEQVGCNRIIVNTDCMQVVST 399

Query: 64  KIHVFFSLVPNGIIYVEAFSLMQRLVVVSLVYTLRSYNRVAHNLANQAIVADSSCVWID 122
                FS      +Y + F L Q   ++S+ +  R  N+VAH LA  + +  SSC+W D
Sbjct: 400 MRDDGFSATTAAAVYDDCFKLWQEFSLISIEHCNRDANQVAHELARNSFLNRSSCIWAD 458

BLAST of HG10022584 vs. NCBI nr
Match: KAF4394884.1 (hypothetical protein G4B88_002761 [Cannabis sativa])

HSP 1 Score: 55.8 bits (133), Expect = 3.5e-04
Identity = 34/123 (27.64%), Postives = 59/123 (47.97%), Query Frame = 0

Query: 2   GMGAVLHDDCGRAIVTHALVCPGCVSAKDGEIFVLTTGLKLVEAHGYSGFWVEMDVEIVV 61
           G+ AV+ DD G  IV   +   GC+S K  E   +  GL+L E    S  WV  D ++++
Sbjct: 710 GLSAVIRDDKGSLIVAETMFIAGCLSVKLAEAAAIHLGLRLAERWSISKAWVASDSKVLI 769

Query: 62  KKIHVFFSLVPN-GIIYVEAFSLMQRLVVVSLVYTLRSYNRVAHNLANQAIVADSSCVWI 121
             I    S   + G +      +     ++  ++  R+ N+VA++LA ++ +   S  W 
Sbjct: 770 TAIENGDSFPTDWGQLVQNINQMKSHFQLLHFLFYSRNCNKVANSLAKRSRMTQKSETWT 829

Query: 122 DCI 124
           DC+
Sbjct: 830 DCL 832

BLAST of HG10022584 vs. NCBI nr
Match: XP_024190675.1 (uncharacterized protein LOC112194687 [Rosa chinensis])

HSP 1 Score: 55.8 bits (133), Expect = 3.5e-04
Identity = 35/127 (27.56%), Postives = 62/127 (48.82%), Query Frame = 0

Query: 2   GMGAVLHDDCGRAIVTHALVCPGCVSAKDGEIFVLTTGLKLVEAHGYSGFWVEMDVEIVV 61
           G+G  L D  G     + +  P   SA   E+  +  GL+L+  H +    ++ D  +VV
Sbjct: 27  GLGGALRDSRGIVHAAYQIAAPFVSSALHAELLAIKVGLQLLSLHNFQSVCIQSDCLLVV 86

Query: 62  KKIH-VFFSLVPNGIIYVEAFSLMQRLVVVSLVYTLRSYNRVAHNLANQAIVADSSCVWI 121
           + I+    +    G +  +   ++Q+L  + + YT R+ N++AH LAN A  ++ +  WI
Sbjct: 87  QDINGNSTNHTEYGTLIEDIQFMLQQLQQIHVSYTPRTCNKIAHRLANLAFESEQTMYWI 146

Query: 122 ----DCI 124
               DCI
Sbjct: 147 QETPDCI 153

BLAST of HG10022584 vs. NCBI nr
Match: XP_019198406.1 (PREDICTED: uncharacterized protein LOC109192287 [Ipomoea nil])

HSP 1 Score: 55.5 bits (132), Expect = 4.6e-04
Identity = 30/120 (25.00%), Postives = 57/120 (47.50%), Query Frame = 0

Query: 1   MGMGAVLHDDCGRAIVTHALVCPGCVSAKDGEIFVLTTGLKLVEAHGYSGFWVEMDVEIV 60
           +G G VL DDCG+ +   ++   G  S K+ E   +   L   +        +E D ++V
Sbjct: 20  VGFGWVLRDDCGQFVAASSIPGEGASSPKEAEAMAIREALSWTKRINLHNVQIECDAQLV 79

Query: 61  VKKIHVFFSLVPNGIIYVEAFSLMQRLVVVSLVYTLRSYNRVAHNLANQAIVADSSCVWI 120
           V+ ++    +    ++ ++   +++ L  V++ Y  R+ N VAHNLA +A        W+
Sbjct: 80  VQSLNHVQEVSSCDLVLLDVIDMLRSLTGVAISYVNRTANSVAHNLAREACSMSVRQEWV 139

BLAST of HG10022584 vs. ExPASy TrEMBL
Match: A0A7J6HHY1 (RNase H domain-containing protein OS=Cannabis sativa OX=3483 GN=G4B88_002761 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.7e-04
Identity = 34/123 (27.64%), Postives = 59/123 (47.97%), Query Frame = 0

Query: 2   GMGAVLHDDCGRAIVTHALVCPGCVSAKDGEIFVLTTGLKLVEAHGYSGFWVEMDVEIVV 61
           G+ AV+ DD G  IV   +   GC+S K  E   +  GL+L E    S  WV  D ++++
Sbjct: 710 GLSAVIRDDKGSLIVAETMFIAGCLSVKLAEAAAIHLGLRLAERWSISKAWVASDSKVLI 769

Query: 62  KKIHVFFSLVPN-GIIYVEAFSLMQRLVVVSLVYTLRSYNRVAHNLANQAIVADSSCVWI 121
             I    S   + G +      +     ++  ++  R+ N+VA++LA ++ +   S  W 
Sbjct: 770 TAIENGDSFPTDWGQLVQNINQMKSHFQLLHFLFYSRNCNKVANSLAKRSRMTQKSETWT 829

Query: 122 DCI 124
           DC+
Sbjct: 830 DCL 832

BLAST of HG10022584 vs. ExPASy TrEMBL
Match: A0A2I4FKP7 (uncharacterized protein LOC108999774 OS=Juglans regia OX=51240 GN=LOC108999774 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.9e-04
Identity = 39/119 (32.77%), Postives = 62/119 (52.10%), Query Frame = 0

Query: 2   GMGAVLHDDCGRAIVTHALVCPGCVSAKDGEIFVLTTGLKLVEAHGYSGFWVEMDVEIVV 61
           G+G VL DD G+ ++  + +     +    E+  L  GL+LV   G+S   VE D  ++V
Sbjct: 173 GVGVVLRDDKGKLVMATSKIENEVDNPSTIELLALLRGLQLVVYLGFSKLVVESDCMLLV 232

Query: 62  KKI-HVFFSLVPNGIIYVEAFSLMQRLVVVSLVYTLRSYNRVAHNLANQAIVADSSCVW 120
           +++ +   SL+ N  + +EA SL+Q    V + Y  R  N VAH LA  A   D+  +W
Sbjct: 233 QELKNEQDSLLANDNLIMEAKSLLQHFQEVEVQYVHRMRNEVAHRLARYAWNVDNISMW 291

BLAST of HG10022584 vs. ExPASy TrEMBL
Match: A0A7J6I0M5 (RNase H domain-containing protein OS=Cannabis sativa OX=3483 GN=G4B88_023029 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 6.4e-04
Identity = 33/123 (26.83%), Postives = 58/123 (47.15%), Query Frame = 0

Query: 2   GMGAVLHDDCGRAIVTHALVCPGCVSAKDGEIFVLTTGLKLVEAHGYSGFWVEMDVEIVV 61
           G+ AV+ DD G  IV   +   GC+S K  E   +  GL+L E    S  WV  D ++++
Sbjct: 484 GLSAVIRDDKGSLIVAETMFIAGCLSVKLAEAAAIQLGLRLAERWSISKAWVASDSKVLI 543

Query: 62  KKIHVFFSLVPN-GIIYVEAFSLMQRLVVVSLVYTLRSYNRVAHNLANQAIVADSSCVWI 121
             I        + G +      +     ++  ++  R+ N+VA++LA ++ +   S  W 
Sbjct: 544 TAIENGDPFPTDWGQLVQNINHMKSHFQLLHFLFYSRNCNKVANSLAKRSHMTQKSETWT 603

Query: 122 DCI 124
           DC+
Sbjct: 604 DCL 606

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_024199929.14.1e-0532.23uncharacterized protein LOC112203151 [Rosa chinensis][more]
KAG2635063.12.0e-0431.09hypothetical protein PVAP13_2NG311303 [Panicum virgatum][more]
KAF4394884.13.5e-0427.64hypothetical protein G4B88_002761 [Cannabis sativa][more]
XP_024190675.13.5e-0427.56uncharacterized protein LOC112194687 [Rosa chinensis][more]
XP_019198406.14.6e-0425.00PREDICTED: uncharacterized protein LOC109192287 [Ipomoea nil][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A7J6HHY11.7e-0427.64RNase H domain-containing protein OS=Cannabis sativa OX=3483 GN=G4B88_002761 PE=... [more]
A0A2I4FKP72.9e-0432.77uncharacterized protein LOC108999774 OS=Juglans regia OX=51240 GN=LOC108999774 P... [more]
A0A7J6I0M56.4e-0426.83RNase H domain-containing protein OS=Cannabis sativa OX=3483 GN=G4B88_023029 PE=... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 1..112
e-value: 2.8E-6
score: 29.4
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 2..110
e-value: 2.6E-13
score: 49.9
IPR044730Ribonuclease H-like domain, plant typeCDDcd06222RNase_H_likecoord: 2..108
e-value: 3.21958E-12
score: 57.7092
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 2..112

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10022584.1HG10022584.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity