HG10022457 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10022457
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Glutathione transport system permease gsiD
Location	Chr05: 24527978 .. 24528505 (+)
RNA-Seq Expression	HG10022457
Synteny	HG10022457

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTGCATTTCCTCCTCCATTGAATTGCCTCTTCGCCGATCGCATCTCAAGCCAAATCGACGGCAACGGCAATGGCAACAGAATTCACCGCCGAAGAATCTCCACGTCTTTCGCCACATTTACATTTCTCCACAAACCTACCGATTCGATTCATTAAAAGCCAATGCAATTCTTCCAACCTCTTTAATTCTCGGAAACAGCACTATTCCTCCGGCGCAGTCTGGCGACGTTTCGGTCCTTCTCCAGACAGGGTATGCCAATTTTCTCCTCTGTTTAAATTCGAATCGATGCACAAATTACTTAGAACCGATCTGAGATTAATCTCTTCAATTTTAATTCTTTTTTTCTTTCGGCAATTTGTGCAGCGGCGTGCTTCTGATTGCGTATTTGATAGCGAATTTCATTCTGCCGGAGTTTATCATGAAATCGTACCGATCCGAAGAGAGCGACGGAAAAGCTGCGGTGGAAGATGAAGAATCAAGCGAAGGGAGGAAGAAGCAAGGCTTTGGCGGCAGAGGGAGATAA

mRNA sequence

ATGAATTGCATTTCCTCCTCCATTGAATTGCCTCTTCGCCGATCGCATCTCAAGCCAAATCGACGGCAACGGCAATGGCAACAGAATTCACCGCCGAAGAATCTCCACGTCTTTCGCCACATTTACATTTCTCCACAAACCTACCGATTCGATTCATTAAAAGCCAATGCAATTCTTCCAACCTCTTTAATTCTCGGAAACAGCACTATTCCTCCGGCGCAGTCTGGCGACGTTTCGGTCCTTCTCCAGACAGGCGGCGTGCTTCTGATTGCGTATTTGATAGCGAATTTCATTCTGCCGGAGTTTATCATGAAATCGTACCGATCCGAAGAGAGCGACGGAAAAGCTGCGGTGGAAGATGAAGAATCAAGCGAAGGGAGGAAGAAGCAAGGCTTTGGCGGCAGAGGGAGATAA

Coding sequence (CDS)

ATGAATTGCATTTCCTCCTCCATTGAATTGCCTCTTCGCCGATCGCATCTCAAGCCAAATCGACGGCAACGGCAATGGCAACAGAATTCACCGCCGAAGAATCTCCACGTCTTTCGCCACATTTACATTTCTCCACAAACCTACCGATTCGATTCATTAAAAGCCAATGCAATTCTTCCAACCTCTTTAATTCTCGGAAACAGCACTATTCCTCCGGCGCAGTCTGGCGACGTTTCGGTCCTTCTCCAGACAGGCGGCGTGCTTCTGATTGCGTATTTGATAGCGAATTTCATTCTGCCGGAGTTTATCATGAAATCGTACCGATCCGAAGAGAGCGACGGAAAAGCTGCGGTGGAAGATGAAGAATCAAGCGAAGGGAGGAAGAAGCAAGGCTTTGGCGGCAGAGGGAGATAA

Protein sequence

MNCISSSIELPLRRSHLKPNRRQRQWQQNSPPKNLHVFRHIYISPQTYRFDSLKANAILPTSLILGNSTIPPAQSGDVSVLLQTGGVLLIAYLIANFILPEFIMKSYRSEESDGKAAVEDEESSEGRKKQGFGGRGR

Homology

[Close]

BLAST of HG10022457 vs. NCBI nr
Match: XP_038897194.1 (uncharacterized protein LOC120085329 [Benincasa hispida])

HSP 1 Score: 221.9 bits (564), Expect = 3.5e-54
Identity = 122/138 (88.41%), Postives = 126/138 (91.30%), Query Frame = 0


Query: 1   MNCISSSIELPLRRSHLKPNRRQRQWQQNSPP-KNLHVFRHIYISPQTYRFDSLKANAIL 60
           MNCISSSIE P  RSHLKPNRRQ   QQNSPP KNLH+FRHIYISPQTYRFDSLK NAI 
Sbjct: 1   MNCISSSIEFPPLRSHLKPNRRQP--QQNSPPKKNLHIFRHIYISPQTYRFDSLKVNAI- 60

Query: 61  PTSLILGNSTIPPAQSGDVSVLLQTGGVLLIAYLIANFILPEFIMKSYRSEESDGKAAVE 120
           P+SLILGNSTIPP+QSGDVSVLLQTGGVLLIAYLIANFILPEFIMKSYRS+ESDGKAA E
Sbjct: 61  PSSLILGNSTIPPSQSGDVSVLLQTGGVLLIAYLIANFILPEFIMKSYRSDESDGKAAAE 120

Query: 121 DEESSEGRKKQGFGGRGR 138
           DEESSEGRKKQGF GR R
Sbjct: 121 DEESSEGRKKQGFSGRRR 135

[Close]

BLAST of HG10022457 vs. NCBI nr
Match: XP_023525256.1 (uncharacterized protein LOC111788910 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 165.2 bits (417), Expect = 3.9e-37
Identity = 97/139 (69.78%), Postives = 111/139 (79.86%), Query Frame = 0


Query: 1   MNCISSSIELPLRRSHLKPNRRQRQWQQNSPPKNLHVFRHIYISPQTYRFDSLKANAILP 60
           MNCI+S+IELP+ RSHLKPNRRQRQ Q NS  +       +YISPQ+ RF SL ANAI P
Sbjct: 18  MNCITSAIELPILRSHLKPNRRQRQ-QNNSQSQ-----PRMYISPQSNRFASLTANAI-P 77

Query: 61  TSLILGNSTIPPAQSGDVSVLLQTGGVLLIAYLIANFILPEFIMKSYRSEESDGKAAVED 120
            SL+L NSTIPP+QSGDVSVLLQT GVLLI Y IANFI+PEFIMKSY ++ES+GKA +ED
Sbjct: 78  NSLVLANSTIPPSQSGDVSVLLQTSGVLLIVYFIANFIVPEFIMKSYSTDESEGKALMED 137

Query: 121 EE--SSEGRKKQGFGGRGR 138
           EE  +SE RKKQGFGG  R
Sbjct: 138 EEKGASERRKKQGFGGNKR 149

[Close]

BLAST of HG10022457 vs. NCBI nr
Match: XP_022940449.1 (uncharacterized protein LOC111446047 [Cucurbita moschata] >KAG7037370.1 hypothetical protein SDJN02_00995 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 163.3 bits (412), Expect = 1.5e-36
Identity = 96/139 (69.06%), Postives = 111/139 (79.86%), Query Frame = 0


Query: 1   MNCISSSIELPLRRSHLKPNRRQRQWQQNSPPKNLHVFRHIYISPQTYRFDSLKANAILP 60
           MNCI+S+IELP+ RSH KPNRRQR+ Q NS  +       IYISPQ+ RF SL ANAI P
Sbjct: 18  MNCITSAIELPVLRSHFKPNRRQRK-QNNSQSQ-----PRIYISPQSNRFASLTANAI-P 77

Query: 61  TSLILGNSTIPPAQSGDVSVLLQTGGVLLIAYLIANFILPEFIMKSYRSEESDGKAAVED 120
            SL+L NSTIPP+QSGDVSVLLQT GVLLI YLIANFI+PEFIMKSY ++ES+GKA +ED
Sbjct: 78  NSLVLANSTIPPSQSGDVSVLLQTSGVLLIVYLIANFIVPEFIMKSYSTDESEGKALMED 137

Query: 121 EE--SSEGRKKQGFGGRGR 138
           +E  +SE RKKQGFGG  R
Sbjct: 138 DEKGASERRKKQGFGGNKR 149

[Close]

BLAST of HG10022457 vs. NCBI nr
Match: KAG6585878.1 (hypothetical protein SDJN03_18611, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 162.9 bits (411), Expect = 1.9e-36
Identity = 96/139 (69.06%), Postives = 111/139 (79.86%), Query Frame = 0


Query: 1   MNCISSSIELPLRRSHLKPNRRQRQWQQNSPPKNLHVFRHIYISPQTYRFDSLKANAILP 60
           MNCI+S+IELP+ RSH KPNRRQR+ Q NS  +       IYISPQ+ RF SL ANAI P
Sbjct: 18  MNCITSAIELPVLRSHFKPNRRQRK-QNNSQSQ-----PRIYISPQSNRFASLTANAI-P 77

Query: 61  TSLILGNSTIPPAQSGDVSVLLQTGGVLLIAYLIANFILPEFIMKSYRSEESDGKAAVED 120
            SL+L NSTIPP+QSGDVSVLLQT GVLLI YLIANFI+PEFIMKSY ++ES+GKA +ED
Sbjct: 78  NSLVLANSTIPPSQSGDVSVLLQTSGVLLIVYLIANFIVPEFIMKSYSTDESEGKALMED 137

Query: 121 EE--SSEGRKKQGFGGRGR 138
           +E  +SE RKKQGFGG  R
Sbjct: 138 DEKGASERRKKQGFGGEFR 149

[Close]

BLAST of HG10022457 vs. NCBI nr
Match: KAG6607795.1 (hypothetical protein SDJN03_01137, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 162.9 bits (411), Expect = 1.9e-36
Identity = 96/139 (69.06%), Postives = 111/139 (79.86%), Query Frame = 0


Query: 1   MNCISSSIELPLRRSHLKPNRRQRQWQQNSPPKNLHVFRHIYISPQTYRFDSLKANAILP 60
           MNCI+S+IELP+ RSH KPNRRQR+ Q NS  +       IYISPQ+ RF SL ANAI P
Sbjct: 18  MNCITSAIELPVLRSHFKPNRRQRK-QNNSQSQ-----PRIYISPQSNRFASLTANAI-P 77

Query: 61  TSLILGNSTIPPAQSGDVSVLLQTGGVLLIAYLIANFILPEFIMKSYRSEESDGKAAVED 120
            SL+L NSTIPP+QSGDVSVLLQT GVLLI YLIANFI+PEFIMKSY ++ES+GKA +ED
Sbjct: 78  NSLVLANSTIPPSQSGDVSVLLQTSGVLLIVYLIANFIVPEFIMKSYSTDESEGKALMED 137

Query: 121 EE--SSEGRKKQGFGGRGR 138
           +E  +SE RKKQGFGG  R
Sbjct: 138 DEKGASERRKKQGFGGEFR 149

[Close]

BLAST of HG10022457 vs. ExPASy TrEMBL
Match: A0A6J1FK57 (uncharacterized protein LOC111446047 OS=Cucurbita moschata OX=3662 GN=LOC111446047 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 7.1e-37
Identity = 96/139 (69.06%), Postives = 111/139 (79.86%), Query Frame = 0


Query: 1   MNCISSSIELPLRRSHLKPNRRQRQWQQNSPPKNLHVFRHIYISPQTYRFDSLKANAILP 60
           MNCI+S+IELP+ RSH KPNRRQR+ Q NS  +       IYISPQ+ RF SL ANAI P
Sbjct: 18  MNCITSAIELPVLRSHFKPNRRQRK-QNNSQSQ-----PRIYISPQSNRFASLTANAI-P 77

Query: 61  TSLILGNSTIPPAQSGDVSVLLQTGGVLLIAYLIANFILPEFIMKSYRSEESDGKAAVED 120
            SL+L NSTIPP+QSGDVSVLLQT GVLLI YLIANFI+PEFIMKSY ++ES+GKA +ED
Sbjct: 78  NSLVLANSTIPPSQSGDVSVLLQTSGVLLIVYLIANFIVPEFIMKSYSTDESEGKALMED 137

Query: 121 EE--SSEGRKKQGFGGRGR 138
           +E  +SE RKKQGFGG  R
Sbjct: 138 DEKGASERRKKQGFGGNKR 149

[Close]

BLAST of HG10022457 vs. ExPASy TrEMBL
Match: A0A6J1J030 (uncharacterized protein LOC111480699 OS=Cucurbita maxima OX=3661 GN=LOC111480699 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 7.9e-36
Identity = 96/141 (68.09%), Postives = 110/141 (78.01%), Query Frame = 0


Query: 1   MNCISSSIELPLRRSHLKPNRRQRQW--QQNSPPKNLHVFRHIYISPQTYRFDSLKANAI 60
           MNCI+S+IELP+ RSH KPNRRQR+    Q+ PP        IYISPQ+ RF SL ANAI
Sbjct: 27  MNCITSAIELPVLRSHFKPNRRQRKQNNSQSQPP--------IYISPQSNRFASLTANAI 86

Query: 61  LPTSLILGNSTIPPAQSGDVSVLLQTGGVLLIAYLIANFILPEFIMKSYRSEESDGKAAV 120
            P SL+L N TIPP+QSGDVSVLLQT GVLLI YLIANFI+PEFIMKSY ++ES+GKA +
Sbjct: 87  -PNSLVLAN-TIPPSQSGDVSVLLQTSGVLLIVYLIANFIVPEFIMKSYSTDESEGKALM 146

Query: 121 EDEE--SSEGRKKQGFGGRGR 138
           EDEE  +SE RKKQGFGG  R
Sbjct: 147 EDEEIGASERRKKQGFGGNKR 157

[Close]

BLAST of HG10022457 vs. ExPASy TrEMBL
Match: A0A5D3BI04 (Glutathione transport system permease gsiD OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold27427G00010 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 1.0e-27
Identity = 81/118 (68.64%), Postives = 90/118 (76.27%), Query Frame = 0


Query: 1   MNCISSSIELPLRRSHLKPNRRQRQWQQNSPPKNLHVFRHIYISPQ-TYRFDSLKANAIL 60
           MN I SSIE  L  S   PN  Q       P  NLH+F  I++SPQ TYRF+S+K N+IL
Sbjct: 1   MNSIFSSIEFRLLPS---PNPPQ-------PQHNLHIFHQIHLSPQTTYRFNSIKTNSIL 60

Query: 61  PT-SLILGNSTIPPAQSGDVSVLLQTGGVLLIAYLIANFILPEFIMKSYRS-EESDGK 116
           PT SLILGNSTIPPAQSGD+SVLLQT GVLLIAYLIANFI PEFIMKSYRS +ES+GK
Sbjct: 61  PTNSLILGNSTIPPAQSGDISVLLQTSGVLLIAYLIANFIFPEFIMKSYRSDDESEGK 108

[Close]

BLAST of HG10022457 vs. ExPASy TrEMBL
Match: A0A0A0K9M2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G420170 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 5.1e-27
Identity = 76/117 (64.96%), Postives = 87/117 (74.36%), Query Frame = 0


Query: 1   MNCISSSIELPLRRSHLKPNRRQRQWQQNSPPKNLHVFRHIYISPQ-TYRFDSLKANAIL 60
           MN I SSI+  L  S   PN RQ       P  NLH+F  IY+ PQ T+RF S+K N+IL
Sbjct: 1   MNSIFSSIQFRLLPS---PNPRQ-------PQHNLHIFHQIYLPPQITHRFSSIKTNSIL 60

Query: 61  PTSLILGNSTIPPAQSGDVSVLLQTGGVLLIAYLIANFILPEFIMKSYRS-EESDGK 116
           PTSLILGNSTIPP+QSGD+SVLL   GVLLIAYL+ANFI PEFIMKSYRS +E+DGK
Sbjct: 61  PTSLILGNSTIPPSQSGDISVLLPISGVLLIAYLLANFIFPEFIMKSYRSDDENDGK 107

[Close]

BLAST of HG10022457 vs. ExPASy TrEMBL
Match: A0A6I9U4E6 (uncharacterized protein LOC105174880 OS=Sesamum indicum OX=4182 GN=LOC105174880 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 6.9e-08
Identity = 43/123 (34.96%), Postives = 72/123 (58.54%), Query Frame = 0


Query: 1   MNCISSSIELPLRRSHLKPNRRQRQWQQNSPPKNLHVFRHIYISPQTYRFDSLKANAILP 60
           M CI+S  +L    SH   ++ + Q+ ++ P         + ++P  + F SL+  ++ P
Sbjct: 1   MKCINSQSQLSPLPSH---HKYKHQFCESKPSS-------MRLNPNGFSFVSLRTRSLPP 60

Query: 61  TSLILGNSTIPPAQSGDVSVLLQTGGVLLIAYLIANFILPEFIMKSYRSEES--DGKAAV 120
           + + L  ++  PA +G++SVLLQT  V L AY +ANF++PE I+K  RS+E+  DG+   
Sbjct: 61  SPIFLAATS--PAAAGNLSVLLQTSAVCLFAYFVANFVVPELILKDLRSKEANKDGENPA 111

Query: 121 EDE 122
           EDE
Sbjct: 121 EDE 111

[Close]

BLAST of HG10022457 vs. TAIR 10
Match: AT1G50732.1 (unknown protein. )

HSP 1 Score: 45.1 bits (105), Expect = 5.4e-05
Identity = 21/58 (36.21%), Postives = 35/58 (60.34%), Query Frame = 0


Query: 68  STIPPAQSGDVSVLLQTGGVLLIAYLIANFILPEFIMKSYRSEESDGKAAVEDEESSE 126
           S +PP++SGD++  L   G ++  YL+ NF++P  + KS + EE       E+EE S+
Sbjct: 67  SVLPPSESGDITTFLFVSGAMISMYLVTNFLVPSLLFKSLQGEEE------EEEEDSD 118

The following BLAST results are available for this feature:

BLAST of HG10022457 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038897194.1	3.5e-54	88.41	uncharacterized protein LOC120085329 [Benincasa hispida]	[more]
XP_023525256.1	3.9e-37	69.78	uncharacterized protein LOC111788910 [Cucurbita pepo subsp. pepo]	[more]
XP_022940449.1	1.5e-36	69.06	uncharacterized protein LOC111446047 [Cucurbita moschata] >KAG7037370.1 hypothet...	[more]
KAG6585878.1	1.9e-36	69.06	hypothetical protein SDJN03_18611, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6607795.1	1.9e-36	69.06	hypothetical protein SDJN03_01137, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of HG10022457 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10022457 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FK57	7.1e-37	69.06	uncharacterized protein LOC111446047 OS=Cucurbita moschata OX=3662 GN=LOC1114460...	[more]
A0A6J1J030	7.9e-36	68.09	uncharacterized protein LOC111480699 OS=Cucurbita maxima OX=3661 GN=LOC111480699...	[more]
A0A5D3BI04	1.0e-27	68.64	Glutathione transport system permease gsiD OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A0A0K9M2	5.1e-27	64.96	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G420170 PE=4 SV=1	[more]
A0A6I9U4E6	6.9e-08	34.96	uncharacterized protein LOC105174880 OS=Sesamum indicum OX=4182 GN=LOC105174880 ...	[more]

BLAST of HG10022457 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G50732.1	5.4e-05	36.21	unknown protein.	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 113..137
None	No IPR available	PANTHER	PTHR37196	TRANSMEMBRANE PROTEIN	coord: 1..125

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10022457.1	HG10022457.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane