HG10022418 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10022418
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	30S ribosomal protein S10
Location	Chr05: 24043479 .. 24045371 (-)
RNA-Seq Expression	HG10022418
Synteny	HG10022418

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTATTTCTTCACTCTCTGCTACTATAATTCCATCTCCTACTCTATTTAGTCCTTTATCATCCCATTCTTCTAAACCCAAATTTCTTCCCTTCTCTGCTTCATCTTCTACTGCTTTAAAGCTCAAACCCCTTCAATTTTCGTTGCCGTCGACAAGGGTTTATGCTGCTCCTGAAGTTCTAAACTCCTCGGATACCATTGAACCGCCTCCGGAAATCCTGGAGGCCTCTGGAGTTGCCACTCTCGAGGTTTGTGATGATTTTGTTCGGAATGGAGCAAAATGTTCTAAATTTCGATTTCGTTTTCAATTTCCTTGCAAGTAGCTAAGGGATTTCCATTTTATTTCTTTAAGGTAATGGATTGGACAATGTTTCTGTTTTTGTTTTATGTTGTGTTCATGTTTAGGGTGAAGATTTTGAGGCGCCTGGGACTTCAGCGCTCAGCATTGGTGAGGATGTGGATAAGGTAAATTTTATGTTTTTCAGATAATGTTTTACTCCAGCTTCCTGTAGCTTTCTGAAGGTATAAAATGTTCTGCAGAGAAACTTCTGAAACCAAAACTGAGCTCTAAAATATACATTGGTTCTCATGAGTAAAGAAAGAGTGGCCAGAAAATATACAATGGGATCATTTAATGAGATTATATAAGTATCATGATTTATGATCCTGCTAAGTTGACTGAGTAAGGTCATGAGTGAATGGAAAATTTAAATTGTATTTATATTTGTAGTTGGTGTTGCCTTAGGCTCTTAGCTAATGACATGCTTAGGAGTGATTTTGAAATGGTTAAATTCATTTTTGTCATTTTCAAAATCACTCCAAAAATGTTTTTAATCATTCGAAATCAATTTTAATAGAATGAGAGCTGCATCTAAAGTGTAAAATTAAACATTGAATTGTTTTTGAGTGATTAAAGATGTGTTTTGGAATGATTTCAAACATGACAAAAGTGATTTTAACCATTTCAAAATCACTCCCAAACATACACTAAGTAATATGATGAATCTAATGCAATATATAAAGTTCCTAATGTAGTGGGATTGAGTGGAATGTTATTGTTCCATATTCGTTTGTATCCTAAAACAACCTCTTCAACTGGGTAGTGCATAGTTCTCCAATTGTACAATGGTTCCACCAGCTTAATTTATGTGACTTATTGGCCCATTAGGGTATATATATATACACATAGGCAAAATGTCGACTTTCATCGAAAAAAATAGAAGAATACAAGGGCGTCGTAATACAAAAAACAGGCCTAAGGACTCAAGTCCAAAAAAACAAGACCAAAATCATAGTTACAAAAAGGCCTAGTGGGCAAAGTCCAAAAAGAGACATTAAACCTAGCTACTTCCCAAAATGGATACCAAGATATTCATTTTGTACCTTTATATTTAAAAAATGCCAATATGGTCTTCAGCAGGTCTCAGTGCTGTGTTATTTGATTTGTTTGATTATCTGTGCTACGAGGTGTGTCCAGGGACTTATCTTAGCGAATTGGTTTTGTAATTGATACTTTATAGTGTCCATCTTTTTCTTATGTTCGGCTGATTTTAACAAACTAAAGATGTTTGTGGTTTCAGCTGGCGCCAAAGCAGAAAATTAGAATTAAACTAAGGTCTTACTGGGTTCCACTCATTGAAGATTCTTGCAAGCAGATAATGGATGCTGCAAGGAATACAAATGCAAAAACCATGGGTCCTGTGCCATTACCTACAAAAAAGCGCATCTATTGTGTTCTTAAATCCCCTCATGTTCATAAGGATGCAAGATTCCATTTTGAAATCAGAACCCACCAACGCCTTATTGATATTTTGTACCCTACTGCCCAAACAATCGATTCTTTGATGCAACTAGACCTTCCAGCTGGTGTTGACGTGGAGGTCAAGCTATGA

mRNA sequence

ATGGCTATTTCTTCACTCTCTGCTACTATAATTCCATCTCCTACTCTATTTAGTCCTTTATCATCCCATTCTTCTAAACCCAAATTTCTTCCCTTCTCTGCTTCATCTTCTACTGCTTTAAAGCTCAAACCCCTTCAATTTTCGTTGCCGTCGACAAGGGTTTATGCTGCTCCTGAAGTTCTAAACTCCTCGGATACCATTGAACCGCCTCCGGAAATCCTGGAGGCCTCTGGAGTTGCCACTCTCGAGGGTGAAGATTTTGAGGCGCCTGGGACTTCAGCGCTCAGCATTGGTGAGGATGTGGATAAGCTGGCGCCAAAGCAGAAAATTAGAATTAAACTAAGGTCTTACTGGGTTCCACTCATTGAAGATTCTTGCAAGCAGATAATGGATGCTGCAAGGAATACAAATGCAAAAACCATGGGTCCTGTGCCATTACCTACAAAAAAGCGCATCTATTGTGTTCTTAAATCCCCTCATGTTCATAAGGATGCAAGATTCCATTTTGAAATCAGAACCCACCAACGCCTTATTGATATTTTGTACCCTACTGCCCAAACAATCGATTCTTTGATGCAACTAGACCTTCCAGCTGGTGTTGACGTGGAGGTCAAGCTATGA

Coding sequence (CDS)

ATGGCTATTTCTTCACTCTCTGCTACTATAATTCCATCTCCTACTCTATTTAGTCCTTTATCATCCCATTCTTCTAAACCCAAATTTCTTCCCTTCTCTGCTTCATCTTCTACTGCTTTAAAGCTCAAACCCCTTCAATTTTCGTTGCCGTCGACAAGGGTTTATGCTGCTCCTGAAGTTCTAAACTCCTCGGATACCATTGAACCGCCTCCGGAAATCCTGGAGGCCTCTGGAGTTGCCACTCTCGAGGGTGAAGATTTTGAGGCGCCTGGGACTTCAGCGCTCAGCATTGGTGAGGATGTGGATAAGCTGGCGCCAAAGCAGAAAATTAGAATTAAACTAAGGTCTTACTGGGTTCCACTCATTGAAGATTCTTGCAAGCAGATAATGGATGCTGCAAGGAATACAAATGCAAAAACCATGGGTCCTGTGCCATTACCTACAAAAAAGCGCATCTATTGTGTTCTTAAATCCCCTCATGTTCATAAGGATGCAAGATTCCATTTTGAAATCAGAACCCACCAACGCCTTATTGATATTTTGTACCCTACTGCCCAAACAATCGATTCTTTGATGCAACTAGACCTTCCAGCTGGTGTTGACGTGGAGGTCAAGCTATGA

Protein sequence

MAISSLSATIIPSPTLFSPLSSHSSKPKFLPFSASSSTALKLKPLQFSLPSTRVYAAPEVLNSSDTIEPPPEILEASGVATLEGEDFEAPGTSALSIGEDVDKLAPKQKIRIKLRSYWVPLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL

Homology

[Close]

BLAST of HG10022418 vs. NCBI nr
Match: XP_008462962.2 (PREDICTED: 30S ribosomal protein S10, chloroplastic [Cucumis melo])

HSP 1 Score: 385.2 bits (988), Expect = 3.6e-103
Identity = 199/206 (96.60%), Postives = 201/206 (97.57%), Query Frame = 0


Query: 1   MAISSLSATIIPSPTLFSPLSSHSSKPKFLPFSASSSTALKLKPLQFSLPSTRVYAAPEV 60
           MAISSLSATIIPSPTLF+ LSSHSSKPKFLPF  SSSTALKLKPLQFSLPSTRVYAAPEV
Sbjct: 1   MAISSLSATIIPSPTLFTSLSSHSSKPKFLPFPGSSSTALKLKPLQFSLPSTRVYAAPEV 60

Query: 61  LNSSDTIEPPPEILEASGVATLEGEDFEAPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120
           L+SSDTIEPPPEILE SGVATLEGEDFE PGTSALSIGEDVDKLAPKQKIRIKLRSYWVP
Sbjct: 61  LDSSDTIEPPPEILEGSGVATLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120

Query: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180
           LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI
Sbjct: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180

Query: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 207
           LYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 206

[Close]

BLAST of HG10022418 vs. NCBI nr
Match: XP_038899555.1 (30S ribosomal protein S10, chloroplastic [Benincasa hispida] >XP_038899556.1 30S ribosomal protein S10, chloroplastic [Benincasa hispida])

HSP 1 Score: 379.4 bits (973), Expect = 2.0e-101
Identity = 196/206 (95.15%), Postives = 198/206 (96.12%), Query Frame = 0


Query: 1   MAISSLSATIIPSPTLFSPLSSHSSKPKFLPFSASSSTALKLKPLQFSLPSTRVYAAPEV 60
           MAISSLSATIIPSPTLFS LSSHSSKPK LPFS  SSTALKLKPLQFSLP+TRVY APEV
Sbjct: 1   MAISSLSATIIPSPTLFSSLSSHSSKPKLLPFSGLSSTALKLKPLQFSLPTTRVYVAPEV 60

Query: 61  LNSSDTIEPPPEILEASGVATLEGEDFEAPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120
           L+SSDTIEPPPEILE SGVATLEGEDFE PGTSAL IGEDVDKLAPKQKIRIKLRSYWVP
Sbjct: 61  LDSSDTIEPPPEILEGSGVATLEGEDFEVPGTSALGIGEDVDKLAPKQKIRIKLRSYWVP 120

Query: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180
           LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI
Sbjct: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180

Query: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 207
           LYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 206

[Close]

BLAST of HG10022418 vs. NCBI nr
Match: XP_004150471.1 (30S ribosomal protein S10, chloroplastic [Cucumis sativus] >XP_011651997.1 30S ribosomal protein S10, chloroplastic [Cucumis sativus] >XP_031744994.1 30S ribosomal protein S10, chloroplastic [Cucumis sativus] >KAE8645988.1 hypothetical protein Csa_015449 [Cucumis sativus])

HSP 1 Score: 378.3 bits (970), Expect = 4.4e-101
Identity = 195/206 (94.66%), Postives = 199/206 (96.60%), Query Frame = 0


Query: 1   MAISSLSATIIPSPTLFSPLSSHSSKPKFLPFSASSSTALKLKPLQFSLPSTRVYAAPEV 60
           MAISSLSATIIPSPTLF+ LSSHSSKPKF PF ASSSTALKLKPLQFS PSTR+YAAPEV
Sbjct: 1   MAISSLSATIIPSPTLFTSLSSHSSKPKFPPFPASSSTALKLKPLQFSFPSTRLYAAPEV 60

Query: 61  LNSSDTIEPPPEILEASGVATLEGEDFEAPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120
           L+S DTIEPPPEILE SGV+TLEGEDFE PGTSALSIGEDVDKLAPKQKIRIKLRSYWVP
Sbjct: 61  LDSPDTIEPPPEILEGSGVSTLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120

Query: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180
           LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI
Sbjct: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180

Query: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 207
           LYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 206

[Close]

BLAST of HG10022418 vs. NCBI nr
Match: XP_022935934.1 (30S ribosomal protein S10, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 367.9 bits (943), Expect = 5.9e-98
Identity = 191/206 (92.72%), Postives = 195/206 (94.66%), Query Frame = 0


Query: 1   MAISSLSATIIPSPTLFSPLSSHSSKPKFLPFSASSSTALKLKPLQFSLPSTRVYAAPEV 60
           MAISSLSATIIPSP+LF PLSS   KP+FLPFS SSSTALKLKPL FSLPS+RVYAAPEV
Sbjct: 1   MAISSLSATIIPSPSLFVPLSSLHPKPRFLPFSGSSSTALKLKPLHFSLPSSRVYAAPEV 60

Query: 61  LNSSDTIEPPPEILEASGVATLEGEDFEAPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120
           L+SSD  EPPPEILE SG ATLEGEDFEAPGTSA SIGEDVDKLAPKQKIRIKLRSYWVP
Sbjct: 61  LDSSDANEPPPEILEDSGAATLEGEDFEAPGTSAFSIGEDVDKLAPKQKIRIKLRSYWVP 120

Query: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180
           LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI
Sbjct: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180

Query: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 207
           LYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 206

[Close]

BLAST of HG10022418 vs. NCBI nr
Match: KAG7024950.1 (30S ribosomal protein S10, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 367.9 bits (943), Expect = 5.9e-98
Identity = 191/206 (92.72%), Postives = 195/206 (94.66%), Query Frame = 0


Query: 1   MAISSLSATIIPSPTLFSPLSSHSSKPKFLPFSASSSTALKLKPLQFSLPSTRVYAAPEV 60
           MAISSLSATIIPSP+LF PLSS   KP+FLPFS SSSTALKLKPL FSLPS+RVYAAPEV
Sbjct: 1   MAISSLSATIIPSPSLFVPLSSLHPKPRFLPFSGSSSTALKLKPLHFSLPSSRVYAAPEV 60

Query: 61  LNSSDTIEPPPEILEASGVATLEGEDFEAPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120
           L+SSD  EPPPEILE SG ATLEGEDFEAPGTSA SIGEDVDKLAPKQKIRIKLRSYWVP
Sbjct: 61  LDSSDANEPPPEILEDSGTATLEGEDFEAPGTSAFSIGEDVDKLAPKQKIRIKLRSYWVP 120

Query: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180
           LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI
Sbjct: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180

Query: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 207
           LYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 206

[Close]

BLAST of HG10022418 vs. ExPASy Swiss-Prot
Match: Q9M4Y3 (30S ribosomal protein S10, chloroplastic OS=Mesembryanthemum crystallinum OX=3544 GN=RPS10 PE=2 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 6.4e-63
Identity = 143/212 (67.45%), Postives = 155/212 (73.11%), Query Frame = 0


Query: 1   MAISSLSATIIPSPTLFSPLSSHSSKPKFLPFSASSSTALKLKPLQFSLPST------RV 60
           MA SSLS TI+ SP   S  SS  +KP+    S  SS +   + L  S PS+      RV
Sbjct: 1   MATSSLS-TIVFSPLALSNSSSFPNKPQVSNLSLHSSLSNLRRTLSHSSPSSSSSSNVRV 60

Query: 61  YAAPEVLNSSDTIEPPPEILEASGVATLEGEDFEAPGTSALSIGEDVDKLAPKQKIRIKL 120
           +AAPEVL S +T   P   +E            E   TSAL IG D D++APKQKIRIKL
Sbjct: 61  FAAPEVLESQET--GPESYVE------------EGSETSALGIGADSDQMAPKQKIRIKL 120

Query: 121 RSYWVPLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTH 180
           RSYWVPLIEDSCKQIMDAAR TNAKTMGPVPLPTKKRI+CVLKSPHVHKDARFHFEIRTH
Sbjct: 121 RSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIFCVLKSPHVHKDARFHFEIRTH 180

Query: 181 QRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 207
           QRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 QRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 197

[Close]

BLAST of HG10022418 vs. ExPASy Swiss-Prot
Match: Q9LK61 (30S ribosomal protein S10, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS10 PE=2 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 2.7e-61
Identity = 136/209 (65.07%), Postives = 157/209 (75.12%), Query Frame = 0


Query: 1   MAISSLSATIIPSPTLFSPLSSHSSKPKFLPFSASSSTALKLKPLQFSLPS---TRVYAA 60
           MA+S++S+ ++PS  +  P SS SS    +    SSST   L     + PS   T+V+A 
Sbjct: 1   MAVSTVSSFLLPSFGI--PSSSPSSTRLKVSLLPSSSTHGGLSSCVLTKPSVSLTKVFAV 60

Query: 61  PEVLNSSDTIEPPPEILEASGVATLEGEDFEAPGTSALSIGEDVDKLAPKQKIRIKLRSY 120
           P      DT++P PEIL+            E P +S++S+  D DK+APKQKIRIKLRSY
Sbjct: 61  P------DTLDPTPEILDEPA--------SEVPSSSSISV--DADKMAPKQKIRIKLRSY 120

Query: 121 WVPLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRL 180
           WVPLIEDSCKQI+DAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQR+
Sbjct: 121 WVPLIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRM 180

Query: 181 IDILYPTAQTIDSLMQLDLPAGVDVEVKL 207
           IDILYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 IDILYPTAQTIDSLMQLDLPAGVDVEVKL 191

[Close]

BLAST of HG10022418 vs. ExPASy Swiss-Prot
Match: P82162 (30S ribosomal protein S10 alpha, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS10 PE=1 SV=2)

HSP 1 Score: 220.3 bits (560), Expect = 2.0e-56
Identity = 131/211 (62.09%), Postives = 147/211 (69.67%), Query Frame = 0


Query: 1   MAISSLSATIIPSPTLFSPLSSHSSKPKFLPFSASSSTALKLKPLQ-----FSLPSTRVY 60
           MA SS+SA ++ SP      SS S+K  F   S+ +        LQ      +  +   +
Sbjct: 1   MATSSISAALL-SPLTLRNASSSSTKQDFSTLSSLNLRRTLTPTLQSGHTLSNSSNFATF 60

Query: 61  AAPEVLNSSDTIEPPPEILEASGVATLEGEDFEAPGTSALSIGEDVDKLAPKQKIRIKLR 120
           AAP  L          E+LE S  +  +G +     TS +SI  D D++APKQKIRIKLR
Sbjct: 61  AAPGAL----------EVLETSPDSFEDGSE-----TSKISIAADSDQMAPKQKIRIKLR 120

Query: 121 SYWVPLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQ 180
           SYWVPLIEDSCKQIMDAAR TNAK MGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQ
Sbjct: 121 SYWVPLIEDSCKQIMDAARTTNAKIMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQ 180

Query: 181 RLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 207
           RLIDILYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 RLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 195

[Close]

BLAST of HG10022418 vs. ExPASy Swiss-Prot
Match: P17009 (Cyanelle 30S ribosomal protein S10 OS=Cyanophora paradoxa OX=2762 GN=rps10 PE=3 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 9.0e-33
Identity = 65/98 (66.33%), Postives = 86/98 (87.76%), Query Frame = 0


Query: 109 KIRIKLRSYWVPLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFH 168
           KIRI+LRSY   L+E+SC+QI++AA+ T+A  +GP+PLPTKK+IYCVL+SPHV KD+R H
Sbjct: 8   KIRIQLRSYDSSLLENSCEQIIEAAKRTDATAVGPIPLPTKKKIYCVLRSPHVDKDSREH 67

Query: 169 FEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 207
           FEIR H+R+ID+  P+++TID+L +LDLPAGVDVEVKL
Sbjct: 68  FEIRVHRRIIDLYLPSSKTIDTLTRLDLPAGVDVEVKL 105

[Close]

BLAST of HG10022418 vs. ExPASy Swiss-Prot
Match: B7K833 (30S ribosomal protein S10 OS=Gloeothece citriformis (strain PCC 7424) OX=65393 GN=rpsJ PE=3 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 3.4e-32
Identity = 62/100 (62.00%), Postives = 86/100 (86.00%), Query Frame = 0


Query: 107 KQKIRIKLRSYWVPLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDAR 166
           +QKIRI+L+++   L++ SC++I+D A  TNA  +GP+PLPTK+R+YCVL+SPHV KD+R
Sbjct: 6   QQKIRIRLKAFDRRLLDTSCEKIVDTANRTNATAIGPIPLPTKRRVYCVLRSPHVDKDSR 65

Query: 167 FHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 207
            HFE RTH+R+IDI  P+++TID+LM+LDLPAGVD+EVKL
Sbjct: 66  EHFETRTHRRIIDIYQPSSKTIDALMKLDLPAGVDIEVKL 105

[Close]

BLAST of HG10022418 vs. ExPASy TrEMBL
Match: A0A1S3CI46 (30S ribosomal protein S10, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501224 PE=3 SV=1)

HSP 1 Score: 385.2 bits (988), Expect = 1.7e-103
Identity = 199/206 (96.60%), Postives = 201/206 (97.57%), Query Frame = 0


Query: 1   MAISSLSATIIPSPTLFSPLSSHSSKPKFLPFSASSSTALKLKPLQFSLPSTRVYAAPEV 60
           MAISSLSATIIPSPTLF+ LSSHSSKPKFLPF  SSSTALKLKPLQFSLPSTRVYAAPEV
Sbjct: 1   MAISSLSATIIPSPTLFTSLSSHSSKPKFLPFPGSSSTALKLKPLQFSLPSTRVYAAPEV 60

Query: 61  LNSSDTIEPPPEILEASGVATLEGEDFEAPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120
           L+SSDTIEPPPEILE SGVATLEGEDFE PGTSALSIGEDVDKLAPKQKIRIKLRSYWVP
Sbjct: 61  LDSSDTIEPPPEILEGSGVATLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120

Query: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180
           LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI
Sbjct: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180

Query: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 207
           LYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 206

[Close]

BLAST of HG10022418 vs. ExPASy TrEMBL
Match: A0A0A0LEH6 (Ribosomal_S10 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G769090 PE=3 SV=1)

HSP 1 Score: 378.3 bits (970), Expect = 2.1e-101
Identity = 195/206 (94.66%), Postives = 199/206 (96.60%), Query Frame = 0


Query: 1   MAISSLSATIIPSPTLFSPLSSHSSKPKFLPFSASSSTALKLKPLQFSLPSTRVYAAPEV 60
           MAISSLSATIIPSPTLF+ LSSHSSKPKF PF ASSSTALKLKPLQFS PSTR+YAAPEV
Sbjct: 1   MAISSLSATIIPSPTLFTSLSSHSSKPKFPPFPASSSTALKLKPLQFSFPSTRLYAAPEV 60

Query: 61  LNSSDTIEPPPEILEASGVATLEGEDFEAPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120
           L+S DTIEPPPEILE SGV+TLEGEDFE PGTSALSIGEDVDKLAPKQKIRIKLRSYWVP
Sbjct: 61  LDSPDTIEPPPEILEGSGVSTLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120

Query: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180
           LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI
Sbjct: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180

Query: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 207
           LYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 206

[Close]

BLAST of HG10022418 vs. ExPASy TrEMBL
Match: A0A6J1F6U3 (30S ribosomal protein S10, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111442692 PE=3 SV=1)

HSP 1 Score: 367.9 bits (943), Expect = 2.9e-98
Identity = 191/206 (92.72%), Postives = 195/206 (94.66%), Query Frame = 0


Query: 1   MAISSLSATIIPSPTLFSPLSSHSSKPKFLPFSASSSTALKLKPLQFSLPSTRVYAAPEV 60
           MAISSLSATIIPSP+LF PLSS   KP+FLPFS SSSTALKLKPL FSLPS+RVYAAPEV
Sbjct: 1   MAISSLSATIIPSPSLFVPLSSLHPKPRFLPFSGSSSTALKLKPLHFSLPSSRVYAAPEV 60

Query: 61  LNSSDTIEPPPEILEASGVATLEGEDFEAPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120
           L+SSD  EPPPEILE SG ATLEGEDFEAPGTSA SIGEDVDKLAPKQKIRIKLRSYWVP
Sbjct: 61  LDSSDANEPPPEILEDSGAATLEGEDFEAPGTSAFSIGEDVDKLAPKQKIRIKLRSYWVP 120

Query: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180
           LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI
Sbjct: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180

Query: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 207
           LYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 206

[Close]

BLAST of HG10022418 vs. ExPASy TrEMBL
Match: A0A6J1FPZ5 (30S ribosomal protein S10, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111446197 PE=3 SV=1)

HSP 1 Score: 363.6 bits (932), Expect = 5.4e-97
Identity = 188/206 (91.26%), Postives = 194/206 (94.17%), Query Frame = 0


Query: 1   MAISSLSATIIPSPTLFSPLSSHSSKPKFLPFSASSSTALKLKPLQFSLPSTRVYAAPEV 60
           MAISSLSATIIPSPTLF P+SS SSKPK LPFSASS++  KL PLQFSL STRVYAAPEV
Sbjct: 1   MAISSLSATIIPSPTLFGPISSLSSKPKLLPFSASSTSVSKLNPLQFSLSSTRVYAAPEV 60

Query: 61  LNSSDTIEPPPEILEASGVATLEGEDFEAPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120
           L+S  TIEPPPEILE SG A LEGEDFEAPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP
Sbjct: 61  LDSPGTIEPPPEILEGSGAAVLEGEDFEAPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120

Query: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180
           LIEDSCKQI+D+ARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI
Sbjct: 121 LIEDSCKQILDSARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180

Query: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 207
           LYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 206

[Close]

BLAST of HG10022418 vs. ExPASy TrEMBL
Match: A0A6J1IGH3 (30S ribosomal protein S10, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111476723 PE=3 SV=1)

HSP 1 Score: 362.1 bits (928), Expect = 1.6e-96
Identity = 189/206 (91.75%), Postives = 192/206 (93.20%), Query Frame = 0


Query: 1   MAISSLSATIIPSPTLFSPLSSHSSKPKFLPFSASSSTALKLKPLQFSLPSTRVYAAPEV 60
           MAISSLSATIIPSP+LF PLSS   KP FLPFS  SSTALKLKPL FSLPS+RVYAAPEV
Sbjct: 1   MAISSLSATIIPSPSLFIPLSSLHPKPTFLPFSGFSSTALKLKPLHFSLPSSRVYAAPEV 60

Query: 61  LNSSDTIEPPPEILEASGVATLEGEDFEAPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120
           L+SSD  EPPPEILE SG A LEGEDFEAPGTSA SIGEDVDKLAPKQKIRIKLRSYWVP
Sbjct: 61  LDSSDANEPPPEILEDSGAAILEGEDFEAPGTSAFSIGEDVDKLAPKQKIRIKLRSYWVP 120

Query: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180
           LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI
Sbjct: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180

Query: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 207
           LYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 206

[Close]

BLAST of HG10022418 vs. TAIR 10
Match: AT3G13120.1 (Ribosomal protein S10p/S20e family protein )

HSP 1 Score: 236.5 bits (602), Expect = 1.9e-62
Identity = 136/209 (65.07%), Postives = 157/209 (75.12%), Query Frame = 0


Query: 1   MAISSLSATIIPSPTLFSPLSSHSSKPKFLPFSASSSTALKLKPLQFSLPS---TRVYAA 60
           MA+S++S+ ++PS  +  P SS SS    +    SSST   L     + PS   T+V+A 
Sbjct: 1   MAVSTVSSFLLPSFGI--PSSSPSSTRLKVSLLPSSSTHGGLSSCVLTKPSVSLTKVFAV 60

Query: 61  PEVLNSSDTIEPPPEILEASGVATLEGEDFEAPGTSALSIGEDVDKLAPKQKIRIKLRSY 120
           P      DT++P PEIL+            E P +S++S+  D DK+APKQKIRIKLRSY
Sbjct: 61  P------DTLDPTPEILDEPA--------SEVPSSSSISV--DADKMAPKQKIRIKLRSY 120

Query: 121 WVPLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRL 180
           WVPLIEDSCKQI+DAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQR+
Sbjct: 121 WVPLIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRM 180

Query: 181 IDILYPTAQTIDSLMQLDLPAGVDVEVKL 207
           IDILYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 IDILYPTAQTIDSLMQLDLPAGVDVEVKL 191

[Close]

BLAST of HG10022418 vs. TAIR 10
Match: AT3G13120.2 (Ribosomal protein S10p/S20e family protein )

HSP 1 Score: 236.5 bits (602), Expect = 1.9e-62
Identity = 136/209 (65.07%), Postives = 157/209 (75.12%), Query Frame = 0


Query: 1   MAISSLSATIIPSPTLFSPLSSHSSKPKFLPFSASSSTALKLKPLQFSLPS---TRVYAA 60
           MA+S++S+ ++PS  +  P SS SS    +    SSST   L     + PS   T+V+A 
Sbjct: 1   MAVSTVSSFLLPSFGI--PSSSPSSTRLKVSLLPSSSTHGGLSSCVLTKPSVSLTKVFAV 60

Query: 61  PEVLNSSDTIEPPPEILEASGVATLEGEDFEAPGTSALSIGEDVDKLAPKQKIRIKLRSY 120
           P      DT++P PEIL+            E P +S++S+  D DK+APKQKIRIKLRSY
Sbjct: 61  P------DTLDPTPEILDEPA--------SEVPSSSSISV--DADKMAPKQKIRIKLRSY 120

Query: 121 WVPLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRL 180
           WVPLIEDSCKQI+DAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQR+
Sbjct: 121 WVPLIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRM 180

Query: 181 IDILYPTAQTIDSLMQLDLPAGVDVEVKL 207
           IDILYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 IDILYPTAQTIDSLMQLDLPAGVDVEVKL 191

The following BLAST results are available for this feature:

BLAST of HG10022418 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008462962.2	3.6e-103	96.60	PREDICTED: 30S ribosomal protein S10, chloroplastic [Cucumis melo]	[more]
XP_038899555.1	2.0e-101	95.15	30S ribosomal protein S10, chloroplastic [Benincasa hispida] >XP_038899556.1 30S...	[more]
XP_004150471.1	4.4e-101	94.66	30S ribosomal protein S10, chloroplastic [Cucumis sativus] >XP_011651997.1 30S r...	[more]
XP_022935934.1	5.9e-98	92.72	30S ribosomal protein S10, chloroplastic-like [Cucurbita moschata]	[more]
KAG7024950.1	5.9e-98	92.72	30S ribosomal protein S10, chloroplastic, partial [Cucurbita argyrosperma subsp....	[more]

BLAST of HG10022418 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M4Y3	6.4e-63	67.45	30S ribosomal protein S10, chloroplastic OS=Mesembryanthemum crystallinum OX=354...	[more]
Q9LK61	2.7e-61	65.07	30S ribosomal protein S10, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS1...	[more]
P82162	2.0e-56	62.09	30S ribosomal protein S10 alpha, chloroplastic OS=Spinacia oleracea OX=3562 GN=R...	[more]
P17009	9.0e-33	66.33	Cyanelle 30S ribosomal protein S10 OS=Cyanophora paradoxa OX=2762 GN=rps10 PE=3 ...	[more]
B7K833	3.4e-32	62.00	30S ribosomal protein S10 OS=Gloeothece citriformis (strain PCC 7424) OX=65393 G...	[more]

BLAST of HG10022418 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CI46	1.7e-103	96.60	30S ribosomal protein S10, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501224...	[more]
A0A0A0LEH6	2.1e-101	94.66	Ribosomal_S10 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G7690...	[more]
A0A6J1F6U3	2.9e-98	92.72	30S ribosomal protein S10, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1FPZ5	5.4e-97	91.26	30S ribosomal protein S10, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1IGH3	1.6e-96	91.75	30S ribosomal protein S10, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]

BLAST of HG10022418 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G13120.1	1.9e-62	65.07	Ribosomal protein S10p/S20e family protein	[more]
AT3G13120.2	1.9e-62	65.07	Ribosomal protein S10p/S20e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001848	Ribosomal protein S10	PRINTS	PR00971	RIBOSOMALS10	coord: 109..122 score: 42.58 coord: 165..179 score: 52.82 coord: 144..159 score: 53.37
IPR001848	Ribosomal protein S10	TIGRFAM	TIGR01049	TIGR01049	coord: 108..205 e-value: 1.2E-39 score: 132.6
IPR001848	Ribosomal protein S10	PANTHER	PTHR11700	30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER	coord: 1..206
IPR001848	Ribosomal protein S10	HAMAP	MF_00508	Ribosomal_S10	coord: 107..206 score: 24.177229
IPR027486	Ribosomal protein S10 domain	SMART	SM01403	Ribosomal_S10_2	coord: 111..205 e-value: 3.9E-51 score: 185.9
IPR027486	Ribosomal protein S10 domain	PFAM	PF00338	Ribosomal_S10	coord: 111..205 e-value: 1.9E-32 score: 111.4
IPR036838	Ribosomal protein S10 domain superfamily	GENE3D	3.30.70.600	Ribosomal protein S10 domain	coord: 98..206 e-value: 3.7E-41 score: 141.7
IPR036838	Ribosomal protein S10 domain superfamily	SUPERFAMILY	54999	Ribosomal protein S10	coord: 109..206
None	No IPR available	PANTHER	PTHR11700:SF31	BNAC05G40270D PROTEIN	coord: 1..206
IPR018268	Ribosomal protein S10, conserved site	PROSITE	PS00361	RIBOSOMAL_S10	coord: 133..148

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10022418.1	HG10022418.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0015935	small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003723	RNA binding