HG10022398 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10022398
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	cilia- and flagella-associated protein 251-like
Location	Chr05: 23885059 .. 23885490 (+)
RNA-Seq Expression	HG10022398
Synteny	HG10022398

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCCTCCTCTGTAATGCTCTCCTCGTTTTCCTCGCAAATTACTCTGGTCTCTTCAAATCTCTGTCTTCTTCCTCAAAGAACTTTGACCCAAATTTCAGACTCTTTGACTTTGGCCTTGACCTCCTTCAGAAACCACCATTGATTCACTCTGAAACTGCTGAAGAAAAGAAAGACGACCCACAAGAAAACAGAGCAAATTTGCAAGAACAAGAACAAGAAGAAGATGAAGATGAAGAAGCAGAAATGTTAGGGGAGAGGTTTTTTGGAGGTGAAACAGGGGAAGTTGAAGAGATGTTCGAAGAAGAGGAAGAAGGGAATTCTGGAGTGTTGAGTGATGAAGAATTGAATAGAAAGTTTGATGAATTCATCAAAAGAATGAAGGAAGAAATCATTCTAGATGATGCTCCAAGAACTCTAGTTGTAGTTTGA

mRNA sequence

ATGTTCCTCCTCTGTAATGCTCTCCTCGTTTTCCTCGCAAATTACTCTGGTCTCTTCAAATCTCTGTCTTCTTCCTCAAAGAACTTTGACCCAAATTTCAGACTCTTTGACTTTGGCCTTGACCTCCTTCAGAAACCACCATTGATTCACTCTGAAACTGCTGAAGAAAAGAAAGACGACCCACAAGAAAACAGAGCAAATTTGCAAGAACAAGAACAAGAAGAAGATGAAGATGAAGAAGCAGAAATGTTAGGGGAGAGGTTTTTTGGAGGTGAAACAGGGGAAGTTGAAGAGATGTTCGAAGAAGAGGAAGAAGGGAATTCTGGAGTGTTGAGTGATGAAGAATTGAATAGAAAGTTTGATGAATTCATCAAAAGAATGAAGGAAGAAATCATTCTAGATGATGCTCCAAGAACTCTAGTTGTAGTTTGA

Coding sequence (CDS)

ATGTTCCTCCTCTGTAATGCTCTCCTCGTTTTCCTCGCAAATTACTCTGGTCTCTTCAAATCTCTGTCTTCTTCCTCAAAGAACTTTGACCCAAATTTCAGACTCTTTGACTTTGGCCTTGACCTCCTTCAGAAACCACCATTGATTCACTCTGAAACTGCTGAAGAAAAGAAAGACGACCCACAAGAAAACAGAGCAAATTTGCAAGAACAAGAACAAGAAGAAGATGAAGATGAAGAAGCAGAAATGTTAGGGGAGAGGTTTTTTGGAGGTGAAACAGGGGAAGTTGAAGAGATGTTCGAAGAAGAGGAAGAAGGGAATTCTGGAGTGTTGAGTGATGAAGAATTGAATAGAAAGTTTGATGAATTCATCAAAAGAATGAAGGAAGAAATCATTCTAGATGATGCTCCAAGAACTCTAGTTGTAGTTTGA

Protein sequence

MFLLCNALLVFLANYSGLFKSLSSSSKNFDPNFRLFDFGLDLLQKPPLIHSETAEEKKDDPQENRANLQEQEQEEDEDEEAEMLGERFFGGETGEVEEMFEEEEEGNSGVLSDEELNRKFDEFIKRMKEEIILDDAPRTLVVV

Homology

[Close]

BLAST of HG10022398 vs. NCBI nr
Match: XP_038896510.1 (uncharacterized protein LOC120084761 [Benincasa hispida])

HSP 1 Score: 230.3 bits (586), Expect = 1.0e-56
Identity = 125/143 (87.41%), Postives = 132/143 (92.31%), Query Frame = 0


Query: 1   MFLLCNALLVFLANYSGLFKSLSSSSKNFDPNFRLFDFGLDLLQKPPLIHSETAEEKKDD 60
           MF+LCNALLVFLANYSGLFKSLSSS KNFDPNFR+FDFGLD+L KPPLIHSE AEEKKDD
Sbjct: 1   MFILCNALLVFLANYSGLFKSLSSSPKNFDPNFRIFDFGLDILPKPPLIHSEAAEEKKDD 60

Query: 61  PQENRANLQEQEQEEDEDEEAEMLGERFFGGETGEVEEMFEEEEEGNSGVLSDEELNRKF 120
           PQENR NLQE+EQEE   +E +MLGE FFGGETGEVEE+ EEEEEGN GVLSDEELNRKF
Sbjct: 61  PQENRPNLQEEEQEE---QETQMLGEMFFGGETGEVEEIIEEEEEGNCGVLSDEELNRKF 120

Query: 121 DEFIKRMKEEIILDDAPRTLVVV 144
           DEFIKRMKEEIILDDAPRTLVVV
Sbjct: 121 DEFIKRMKEEIILDDAPRTLVVV 140

[Close]

BLAST of HG10022398 vs. NCBI nr
Match: TYK07937.1 (uncharacterized protein E5676_scaffold265G00530 [Cucumis melo var. makuwa])

HSP 1 Score: 189.5 bits (480), Expect = 2.0e-44
Identity = 111/152 (73.03%), Postives = 118/152 (77.63%), Query Frame = 0


Query: 1   MFLLCNALLVFLANYSGLFKSLSSSSKNFDPNFRLFDFGLDLLQKPPLIHSETAEEKKDD 60
           MFLLCNALLVFLANYSGLFKSLSSS K+ D NFR FDFGLDLLQKP   HSET EEKKDD
Sbjct: 1   MFLLCNALLVFLANYSGLFKSLSSSPKHLDTNFRFFDFGLDLLQKPSSTHSETPEEKKDD 60

Query: 61  PQENRANLQEQEQEEDEDEEAEMLGERFFGGETGEVEEMF---------EEEEEGNSGVL 120
            Q+N  + ++QE+E       E LGER FG ETGEV EM          EEEEEGN GV+
Sbjct: 61  AQQNTPSFEQQEEE-------EALGERLFGSETGEVVEMIQAEEEEDDEEEEEEGNCGVM 120

Query: 121 SDEELNRKFDEFIKRMKEEIILDDAPRTLVVV 144
           SDEELNRKFDEFIKRMKEEIILDDAPRTLVVV
Sbjct: 121 SDEELNRKFDEFIKRMKEEIILDDAPRTLVVV 145

[Close]

BLAST of HG10022398 vs. NCBI nr
Match: XP_008462992.1 (PREDICTED: uncharacterized protein LOC103501239 [Cucumis melo])

HSP 1 Score: 188.0 bits (476), Expect = 5.8e-44
Identity = 111/156 (71.15%), Postives = 118/156 (75.64%), Query Frame = 0


Query: 1   MFLLCNALLVFLANYSGLFKSLSSSSKNFDPNFRLFDFGLDLLQKPPLIHSETAEEKKDD 60
           MFLLCNALLVFLANYSGLFKSLSSS K+ D NFR FDFGLDLLQKP   HSET EEKKDD
Sbjct: 70  MFLLCNALLVFLANYSGLFKSLSSSPKHLDTNFRFFDFGLDLLQKPSSTHSETPEEKKDD 129

Query: 61  PQENRANLQEQEQEEDEDEEAEMLGERFFGGETGEVEEMF-------------EEEEEGN 120
            Q+N  + ++QE+E       E LGER FG ETGEV EM              EEEEEGN
Sbjct: 130 AQQNTPSFEQQEEE-------EALGERLFGSETGEVVEMIQAEEEEEDDEEEEEEEEEGN 189

Query: 121 SGVLSDEELNRKFDEFIKRMKEEIILDDAPRTLVVV 144
            GV+SDEELNRKFDEFIKRMKEEIILDDAPRTLVVV
Sbjct: 190 CGVMSDEELNRKFDEFIKRMKEEIILDDAPRTLVVV 218

[Close]

BLAST of HG10022398 vs. NCBI nr
Match: KGN44005.1 (hypothetical protein Csa_018201 [Cucumis sativus])

HSP 1 Score: 184.1 bits (466), Expect = 8.4e-43
Identity = 110/150 (73.33%), Postives = 120/150 (80.00%), Query Frame = 0


Query: 1   MFLLCNALLVFLANYSGLFKSLSSSS----KNFDPNFRLFDFGLDLLQKPPLIHSETAEE 60
           MFLLCNALLVFLANYSGLFKSLSSSS    K+ D NFR FDFGLDLLQKP  IHSET EE
Sbjct: 72  MFLLCNALLVFLANYSGLFKSLSSSSSSSPKHLDTNFRFFDFGLDLLQKPSSIHSETPEE 131

Query: 61  KKDDPQENRANLQEQEQEEDEDEEAEMLGERFFGGETGEVEEMF---EEEEEGNSGVLSD 120
           KKDD  +N  NL++Q+Q      +AE+LGE  FG ETGE+ EM    EEE+E N GV+SD
Sbjct: 132 KKDDALQNPPNLEQQQQ------QAEVLGETLFGSETGELVEMIQEEEEEDEENCGVMSD 191

Query: 121 EELNRKFDEFIKRMKEEIILDDAPRTLVVV 144
           EELNRKFDEFIKRMKEEIILDDAPRTLVVV
Sbjct: 192 EELNRKFDEFIKRMKEEIILDDAPRTLVVV 215

[Close]

BLAST of HG10022398 vs. NCBI nr
Match: XP_011659727.1 (uncharacterized protein LOC105436244 [Cucumis sativus])

HSP 1 Score: 184.1 bits (466), Expect = 8.4e-43
Identity = 110/150 (73.33%), Postives = 120/150 (80.00%), Query Frame = 0


Query: 1   MFLLCNALLVFLANYSGLFKSLSSSS----KNFDPNFRLFDFGLDLLQKPPLIHSETAEE 60
           MFLLCNALLVFLANYSGLFKSLSSSS    K+ D NFR FDFGLDLLQKP  IHSET EE
Sbjct: 1   MFLLCNALLVFLANYSGLFKSLSSSSSSSPKHLDTNFRFFDFGLDLLQKPSSIHSETPEE 60

Query: 61  KKDDPQENRANLQEQEQEEDEDEEAEMLGERFFGGETGEVEEMF---EEEEEGNSGVLSD 120
           KKDD  +N  NL++Q+Q      +AE+LGE  FG ETGE+ EM    EEE+E N GV+SD
Sbjct: 61  KKDDALQNPPNLEQQQQ------QAEVLGETLFGSETGELVEMIQEEEEEDEENCGVMSD 120

Query: 121 EELNRKFDEFIKRMKEEIILDDAPRTLVVV 144
           EELNRKFDEFIKRMKEEIILDDAPRTLVVV
Sbjct: 121 EELNRKFDEFIKRMKEEIILDDAPRTLVVV 144

[Close]

BLAST of HG10022398 vs. ExPASy TrEMBL
Match: A0A5D3C7J6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00530 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 9.7e-45
Identity = 111/152 (73.03%), Postives = 118/152 (77.63%), Query Frame = 0


Query: 1   MFLLCNALLVFLANYSGLFKSLSSSSKNFDPNFRLFDFGLDLLQKPPLIHSETAEEKKDD 60
           MFLLCNALLVFLANYSGLFKSLSSS K+ D NFR FDFGLDLLQKP   HSET EEKKDD
Sbjct: 1   MFLLCNALLVFLANYSGLFKSLSSSPKHLDTNFRFFDFGLDLLQKPSSTHSETPEEKKDD 60

Query: 61  PQENRANLQEQEQEEDEDEEAEMLGERFFGGETGEVEEMF---------EEEEEGNSGVL 120
            Q+N  + ++QE+E       E LGER FG ETGEV EM          EEEEEGN GV+
Sbjct: 61  AQQNTPSFEQQEEE-------EALGERLFGSETGEVVEMIQAEEEEDDEEEEEEGNCGVM 120

Query: 121 SDEELNRKFDEFIKRMKEEIILDDAPRTLVVV 144
           SDEELNRKFDEFIKRMKEEIILDDAPRTLVVV
Sbjct: 121 SDEELNRKFDEFIKRMKEEIILDDAPRTLVVV 145

[Close]

BLAST of HG10022398 vs. ExPASy TrEMBL
Match: A0A1S3CI71 (uncharacterized protein LOC103501239 OS=Cucumis melo OX=3656 GN=LOC103501239 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 2.8e-44
Identity = 111/156 (71.15%), Postives = 118/156 (75.64%), Query Frame = 0


Query: 1   MFLLCNALLVFLANYSGLFKSLSSSSKNFDPNFRLFDFGLDLLQKPPLIHSETAEEKKDD 60
           MFLLCNALLVFLANYSGLFKSLSSS K+ D NFR FDFGLDLLQKP   HSET EEKKDD
Sbjct: 70  MFLLCNALLVFLANYSGLFKSLSSSPKHLDTNFRFFDFGLDLLQKPSSTHSETPEEKKDD 129

Query: 61  PQENRANLQEQEQEEDEDEEAEMLGERFFGGETGEVEEMF-------------EEEEEGN 120
            Q+N  + ++QE+E       E LGER FG ETGEV EM              EEEEEGN
Sbjct: 130 AQQNTPSFEQQEEE-------EALGERLFGSETGEVVEMIQAEEEEEDDEEEEEEEEEGN 189

Query: 121 SGVLSDEELNRKFDEFIKRMKEEIILDDAPRTLVVV 144
            GV+SDEELNRKFDEFIKRMKEEIILDDAPRTLVVV
Sbjct: 190 CGVMSDEELNRKFDEFIKRMKEEIILDDAPRTLVVV 218

[Close]

BLAST of HG10022398 vs. ExPASy TrEMBL
Match: A0A0A0K300 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G098730 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 4.1e-43
Identity = 110/150 (73.33%), Postives = 120/150 (80.00%), Query Frame = 0


Query: 1   MFLLCNALLVFLANYSGLFKSLSSSS----KNFDPNFRLFDFGLDLLQKPPLIHSETAEE 60
           MFLLCNALLVFLANYSGLFKSLSSSS    K+ D NFR FDFGLDLLQKP  IHSET EE
Sbjct: 72  MFLLCNALLVFLANYSGLFKSLSSSSSSSPKHLDTNFRFFDFGLDLLQKPSSIHSETPEE 131

Query: 61  KKDDPQENRANLQEQEQEEDEDEEAEMLGERFFGGETGEVEEMF---EEEEEGNSGVLSD 120
           KKDD  +N  NL++Q+Q      +AE+LGE  FG ETGE+ EM    EEE+E N GV+SD
Sbjct: 132 KKDDALQNPPNLEQQQQ------QAEVLGETLFGSETGELVEMIQEEEEEDEENCGVMSD 191

Query: 121 EELNRKFDEFIKRMKEEIILDDAPRTLVVV 144
           EELNRKFDEFIKRMKEEIILDDAPRTLVVV
Sbjct: 192 EELNRKFDEFIKRMKEEIILDDAPRTLVVV 215

[Close]

BLAST of HG10022398 vs. ExPASy TrEMBL
Match: A0A6J1F6C4 (uncharacterized protein LOC111442742 OS=Cucurbita moschata OX=3662 GN=LOC111442742 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 1.8e-35
Identity = 102/155 (65.81%), Postives = 115/155 (74.19%), Query Frame = 0


Query: 1   MFLLCNALLVFLANYSGLFKSLSSSSKNFDPNFRLFDFG-------LDLLQKPPLIHSET 60
           MFLLCNALLVFLANYSGLFKSLSSSS++FDP  RL+DFG        +L+QKPPLI +ET
Sbjct: 80  MFLLCNALLVFLANYSGLFKSLSSSSRSFDPCSRLYDFGPLSEPITTELVQKPPLIPTET 139

Query: 61  -AEEKKDDPQENRANLQEQEQEEDEDEEAEMLGERFFGGETGEVEEMF----EEEEEGNS 120
            A+EK DDP E   +      E  E++E+  L  RFF  ETGEVE+      EEEEEGN 
Sbjct: 140 AADEKNDDPDERIVS----APENGEEDESYGLAARFFAAETGEVEDTAAATEEEEEEGNG 199

Query: 121 GVLSDEELNRKFDEFIKRMKEEIILDDAPRTLVVV 144
           GVLSDEEL RKFDEFIKRMKEEI+LDDA RTLVVV
Sbjct: 200 GVLSDEELKRKFDEFIKRMKEEIVLDDATRTLVVV 230

[Close]

BLAST of HG10022398 vs. ExPASy TrEMBL
Match: A0A6J1IEZ8 (uncharacterized protein LOC111475827 OS=Cucurbita maxima OX=3661 GN=LOC111475827 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 5.3e-35
Identity = 101/155 (65.16%), Postives = 114/155 (73.55%), Query Frame = 0


Query: 1   MFLLCNALLVFLANYSGLFKSLSSSSKNFDPNFRLFDFG-------LDLLQKPPLIHSE- 60
           MFLLCNALLVFLANYSGLFKSLSSSS++FDP  RL+DFG        +L+QKPPLI +E 
Sbjct: 61  MFLLCNALLVFLANYSGLFKSLSSSSRSFDPCSRLYDFGPLCEPITAELVQKPPLIPTEA 120

Query: 61  TAEEKKDDPQENRANLQEQEQEEDEDEEAEMLGERFFGGETGEVEE----MFEEEEEGNS 120
            A+EK DDP E   +      E  E++E+  L  RFF  ETGEVE+      EEEEEGN 
Sbjct: 121 AADEKNDDPDERIVS----APENSEEDESYGLAARFFAAETGEVEDTTAAAAEEEEEGNG 180

Query: 121 GVLSDEELNRKFDEFIKRMKEEIILDDAPRTLVVV 144
           GVLSDEEL RKFDEFIKRMKEEI+LDDA RTLVVV
Sbjct: 181 GVLSDEELKRKFDEFIKRMKEEIVLDDATRTLVVV 211

[Close]

BLAST of HG10022398 vs. TAIR 10
Match: AT3G13130.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte; Has 140 Blast hits to 132 proteins in 41 species: Archae - 2; Bacteria - 4; Metazoa - 29; Fungi - 20; Plants - 51; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink). )

HSP 1 Score: 56.2 bits (134), Expect = 2.5e-08
Identity = 55/153 (35.95%), Postives = 80/153 (52.29%), Query Frame = 0


Query: 1   MFLLCNALLVFLANYSGLFKSLSSSSKNFDPNFRLFDFG--------LDLLQKPPLIHSE 60
           MFLLCN L+V +A  SGL  S     K +    + FD+G        L+L  K       
Sbjct: 50  MFLLCNGLVVVVAKCSGLVASSKPIEKIWSNTDKTFDYGDFESYTTILELEYKSDHGIGT 109

Query: 61  TAEEKKDDPQENRANLQEQEQEEDEDEEAEMLGERFFGGETGEVEEMFEEEEEGNSGVL- 120
            +   ++   E     QE E  E+ED++   L +     E G       EEEEGN GV+ 
Sbjct: 110 ESFLAEEVTVEEDTKHQETEDNEEEDDDDNTLADNDGEEECGLRGGSINEEEEGNVGVMT 169

Query: 121 -SDEELNRKFDEFIKRMKEEIILDDAPRTLVVV 144
            ++EE+N+KFDEFI++MKEE+ + +A R L++V
Sbjct: 170 STEEEMNKKFDEFIRKMKEELRI-EAKRHLILV 201

The following BLAST results are available for this feature:

BLAST of HG10022398 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038896510.1	1.0e-56	87.41	uncharacterized protein LOC120084761 [Benincasa hispida]	[more]
TYK07937.1	2.0e-44	73.03	uncharacterized protein E5676_scaffold265G00530 [Cucumis melo var. makuwa]	[more]
XP_008462992.1	5.8e-44	71.15	PREDICTED: uncharacterized protein LOC103501239 [Cucumis melo]	[more]
KGN44005.1	8.4e-43	73.33	hypothetical protein Csa_018201 [Cucumis sativus]	[more]
XP_011659727.1	8.4e-43	73.33	uncharacterized protein LOC105436244 [Cucumis sativus]	[more]

BLAST of HG10022398 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10022398 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C7J6	9.7e-45	73.03	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CI71	2.8e-44	71.15	uncharacterized protein LOC103501239 OS=Cucumis melo OX=3656 GN=LOC103501239 PE=...	[more]
A0A0A0K300	4.1e-43	73.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G098730 PE=4 SV=1	[more]
A0A6J1F6C4	1.8e-35	65.81	uncharacterized protein LOC111442742 OS=Cucurbita moschata OX=3662 GN=LOC1114427...	[more]
A0A6J1IEZ8	5.3e-35	65.16	uncharacterized protein LOC111475827 OS=Cucurbita maxima OX=3661 GN=LOC111475827...	[more]

BLAST of HG10022398 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G13130.1	2.5e-08	35.95	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 51..71
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 49..113
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 95..110
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..69
None	No IPR available	PANTHER	PTHR34947	TRANSMEMBRANE PROTEIN	coord: 1..143
None	No IPR available	PANTHER	PTHR34947:SF2	TRANSMEMBRANE PROTEIN	coord: 1..143

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10022398.1	HG10022398.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane