HG10022392 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10022392
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	mRNA decay activator protein ZFP36L2-like isoform X2
Location	Chr05: 23845610 .. 23847976 (-)
RNA-Seq Expression	HG10022392
Synteny	HG10022392

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGATCATCAAGGAAAGAGGAGCTCCAAAACATCCATTATCAAAGGCCTAAACGCTTCGGTTCGGCCGATCAACATTCAAATGGACAATCACTTGGTAATTGGGGGAACTAGACACTATCACCAGGAAACAAACTGTAAAAGTCCGACGATCTTCGATCGTTACACCATTATGAATCACTATGCTAGCAGCACTCCTGGAAGCAATAGCTTCGGTCCTCGGGGAACAGGATCGCCATTGTCACCACTTTCGGCTATCGAGAATTTGGAAACACCACGTATAAGGTCTCCACAAATTTATGGAACTCCAGTGAAGGTTGATGAAGAAGTGATAGTAATGGATGGGATTTTGATCAATTCGATTCCTGGTGGAGCGAAGACAGTGAGGTCTCCTTTAGATTCTGGAAGTGGTGGAGGTTTGTTGTCAGGCAAAAATCAATACAGAACAGACATTTGCCGCTACTGGGAGGATTCTGGAAGCTGCCGCTTCGGCCACAAATGCCAGGTTAGTTATTTTGTCCCCACTGTAAGGATCTGATCTCAATTATTGCCTCTGCAAATTTATTGGCCACAATGCAGTATCTTTGTTTATTACTTAAAAGACACCTTACCCCTGTGTCTTGAGGTTTGATTGCTAATAAGAGAAATGGATAAAAAAGATATTTTCAAAGAATAGTCTGATTAAAGATTAGTCGTTCCTGTTCAGGTTTAATTGGTGAGCTTTTGGACTGAATTATTTATTTATCATTTAATGTGGGTTAATTTTCCATTTATTCTTGTTTCGTGTGGGTAGACTGAATTTATTTTTTATAGAATAACTTGATTGAAATAAATTGATGCATTAAGAGAGAGGTACAGGATGAATCAATGTCTCTTAGCCAAGGTTTTTTGAGAAAGCTCAGATGGTGATTCAAGGATTGAATATATGTATCCCACTCCCAATTTTGTTTAAAATTTGGTCTCAGATAATGAACTCAGTTCTAATGTGTTAATAGATAGAGTGAAACAGTAGGTTGGCTGCCAAAATTGGTGCAGTTATGTATTATCACACCAAGTTAGTAGATTAGCAGATAATTGAACCTAACCTTTTTCAAAAGTTGGATTAACCATAGACTTCAGCAAGAGCCCGACATTCCCTTTCAGTGGTTGGATTGAGTACCAACATTGAGTTTATTAGAGCATCATTATACATGACACGAATTCAAAGCTAAAGATAACACAACACTACTAACTTCCAGTATCTATCAATCAACGACATCCTGTGCTCTTGATTTCAATAGTGGATATATTATTCAACTTCTTGGGTAATATAATTCAGTCATGGGGGACGGGGACTTGGGATTGGATCCTCCTATTTAATACTTTTAAATAATTTGGTTGGCTGACTTTATTCCAAGAATAGGATCAAAAGCTTGAATTTCTCAATTTTTTTTAATGATCTATATGTAAGCTAAAAATTATAAACCTAATAGAATTTGAGTCCATTGATCTAAAATGTAAGTAATTAAAATATTTTGTTTAGTTACTCATTTCGTTATCCATTCACCGAAAGTTTGGGCTCCTTCATAATTCTTATGTAATTGTATTTGTCTTCATTATGGTATAAATAGAGAAAAAATTAGTTTATATTTAGAACCTCATAGCTAGACACTACGTAAAACTATCATTAAACTCAAAAGTATAGCATTATAGATTAAATTGCGATGTACATGTCAGAGCATGCTTAATCTTTTCTAATAATATTCTCAATCATACATGTTGAAATTAATGGGAAATAGTTTGATTTGCATACAGTAGTTGATATGGTATTTCAGAATTGTATTTTCTGTTTGCAGTTTGCACATGGAAAGGAGGACCTTCGGCCAGGTCGTTTACCGGTTAGAACCAAGCCTAAGGTACCATTGACATCTGATAAATTAAATATACTGCAGGTTTTGTTCGGATAAAAGACACTTTTAGATTTGTATATTCTTCGGTACTACAGTTCAACGAAGCGTATGGTTCCAAGTTTCGCAACAATCATTTACAAACAGGAATAGCTGCAACAACAACACAATCAAACTCAGTAGATACAATCACCAAAACTGAAATTAGCAAAAGAGAGGGTCTTGGTACAACATCCTCAGCTTCAATACGCCACATGAACACGAACACGAAGCCAAGCCTTATTTCCACCATTTCCATCATTGATTGGTCACCTGAAGATGATGGCATTAAAATTGCTGTCCCGGAAACAGAGTCGACAAAAAGAGAAGATGTAGACCAACACATCCATGGAGTTCTTTATGGTTCCACCACTGAGAGGACCAAAACAAGATTACCAGTTTTCACTCAACTCTGCTCTGAAAAACTCCAACAAGAATAG

mRNA sequence

ATGGAAGATCATCAAGGAAAGAGGAGCTCCAAAACATCCATTATCAAAGGCCTAAACGCTTCGGTTCGGCCGATCAACATTCAAATGGACAATCACTTGGTAATTGGGGGAACTAGACACTATCACCAGGAAACAAACTGTAAAAGTCCGACGATCTTCGATCGTTACACCATTATGAATCACTATGCTAGCAGCACTCCTGGAAGCAATAGCTTCGGTCCTCGGGGAACAGGATCGCCATTGTCACCACTTTCGGCTATCGAGAATTTGGAAACACCACGTATAAGGTCTCCACAAATTTATGGAACTCCAGTGAAGGTTGATGAAGAAGTGATAGTAATGGATGGGATTTTGATCAATTCGATTCCTGGTGGAGCGAAGACAGTGAGGTCTCCTTTAGATTCTGGAAGTGGTGGAGGTTTGTTGTCAGGCAAAAATCAATACAGAACAGACATTTGCCGCTACTGGGAGGATTCTGGAAGCTGCCGCTTCGGCCACAAATGCCAGTTTGCACATGGAAAGGAGGACCTTCGGCCAGGTCGTTTACCGGTTAGAACCAAGCCTAAGTTCAACGAAGCGTATGGTTCCAAGTTTCGCAACAATCATTTACAAACAGGAATAGCTGCAACAACAACACAATCAAACTCAGTAGATACAATCACCAAAACTGAAATTAGCAAAAGAGAGGGTCTTGGTACAACATCCTCAGCTTCAATACGCCACATGAACACGAACACGAAGCCAAGCCTTATTTCCACCATTTCCATCATTGATTGGTCACCTGAAGATGATGGCATTAAAATTGCTGTCCCGGAAACAGAGTCGACAAAAAGAGAAGATGTAGACCAACACATCCATGGAGTTCTTTATGGTTCCACCACTGAGAGGACCAAAACAAGATTACCAGTTTTCACTCAACTCTGCTCTGAAAAACTCCAACAAGAATAG

Coding sequence (CDS)

ATGGAAGATCATCAAGGAAAGAGGAGCTCCAAAACATCCATTATCAAAGGCCTAAACGCTTCGGTTCGGCCGATCAACATTCAAATGGACAATCACTTGGTAATTGGGGGAACTAGACACTATCACCAGGAAACAAACTGTAAAAGTCCGACGATCTTCGATCGTTACACCATTATGAATCACTATGCTAGCAGCACTCCTGGAAGCAATAGCTTCGGTCCTCGGGGAACAGGATCGCCATTGTCACCACTTTCGGCTATCGAGAATTTGGAAACACCACGTATAAGGTCTCCACAAATTTATGGAACTCCAGTGAAGGTTGATGAAGAAGTGATAGTAATGGATGGGATTTTGATCAATTCGATTCCTGGTGGAGCGAAGACAGTGAGGTCTCCTTTAGATTCTGGAAGTGGTGGAGGTTTGTTGTCAGGCAAAAATCAATACAGAACAGACATTTGCCGCTACTGGGAGGATTCTGGAAGCTGCCGCTTCGGCCACAAATGCCAGTTTGCACATGGAAAGGAGGACCTTCGGCCAGGTCGTTTACCGGTTAGAACCAAGCCTAAGTTCAACGAAGCGTATGGTTCCAAGTTTCGCAACAATCATTTACAAACAGGAATAGCTGCAACAACAACACAATCAAACTCAGTAGATACAATCACCAAAACTGAAATTAGCAAAAGAGAGGGTCTTGGTACAACATCCTCAGCTTCAATACGCCACATGAACACGAACACGAAGCCAAGCCTTATTTCCACCATTTCCATCATTGATTGGTCACCTGAAGATGATGGCATTAAAATTGCTGTCCCGGAAACAGAGTCGACAAAAAGAGAAGATGTAGACCAACACATCCATGGAGTTCTTTATGGTTCCACCACTGAGAGGACCAAAACAAGATTACCAGTTTTCACTCAACTCTGCTCTGAAAAACTCCAACAAGAATAG

Protein sequence

MEDHQGKRSSKTSIIKGLNASVRPINIQMDNHLVIGGTRHYHQETNCKSPTIFDRYTIMNHYASSTPGSNSFGPRGTGSPLSPLSAIENLETPRIRSPQIYGTPVKVDEEVIVMDGILINSIPGGAKTVRSPLDSGSGGGLLSGKNQYRTDICRYWEDSGSCRFGHKCQFAHGKEDLRPGRLPVRTKPKFNEAYGSKFRNNHLQTGIAATTTQSNSVDTITKTEISKREGLGTTSSASIRHMNTNTKPSLISTISIIDWSPEDDGIKIAVPETESTKREDVDQHIHGVLYGSTTERTKTRLPVFTQLCSEKLQQE

Homology

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BLAST of HG10022392 vs. NCBI nr
Match: XP_038897010.1 (uncharacterized protein LOC120085195 [Benincasa hispida] >XP_038897011.1 uncharacterized protein LOC120085195 [Benincasa hispida])

HSP 1 Score: 537.3 bits (1383), Expect = 8.6e-149
Identity = 271/316 (85.76%), Postives = 287/316 (90.82%), Query Frame = 0


Query: 1   MEDHQGKRSSKTSIIKGLNASVRPINIQMDNHLVIGGTRHYHQETNCKSPTIFDRYTIMN 60
           MED QGKRS+KTSIIKGLNASVRPINIQMDNHLVIGGTRHYHQETNC+SPTI DRYTIMN
Sbjct: 1   MEDRQGKRSTKTSIIKGLNASVRPINIQMDNHLVIGGTRHYHQETNCRSPTIVDRYTIMN 60

Query: 61  HYASSTPGSNSFGPRGTGSPLSPLSAIENLETPRIRSPQIYGTPVKVDEEVIVMDGILIN 120
           HYASST G NSFG RG GSPLSPLSAIENLETP +RSPQIYGTPVKVDEEVIVMDGILI+
Sbjct: 61  HYASSTSGCNSFGSRGAGSPLSPLSAIENLETPPVRSPQIYGTPVKVDEEVIVMDGILIS 120

Query: 121 SIPGGAKTVRSPLDSGSGGGLLSGKNQYRTDICRYWEDSGSCRFGHKCQFAHGKEDLRPG 180
           SIPGGAKT+RSPLDSGSGGG  S KNQYRTDICRYWEDSGSCRFGHKCQFAHGKEDLRP 
Sbjct: 121 SIPGGAKTMRSPLDSGSGGGFSSAKNQYRTDICRYWEDSGSCRFGHKCQFAHGKEDLRPS 180

Query: 181 RLPVRTKPKFNEAYGSKFRNNHLQTGIAATTTQSNSVDTITKTEISKREGL-GTTSSASI 240
           R+PVRTKPKF+E YG KFRN+H  TGIAA TT SN +DT  KTE+S+RE L  TTSS S+
Sbjct: 181 RIPVRTKPKFSETYGPKFRNSHSLTGIAA-TTHSNLIDTFNKTELSRREDLTTTTSSTSV 240

Query: 241 RHMNTNTKPSLISTISIIDWSPEDDGIKIAVPETESTKREDVDQHIHGVLYGSTTERTKT 300
           RHM  NTKPSLI TISIIDWSPEDDGIKI VP+TE+TKREDV+Q+IHGVLYGSTTERTK 
Sbjct: 241 RHM--NTKPSLIPTISIIDWSPEDDGIKIVVPKTETTKREDVNQYIHGVLYGSTTERTKK 300

Query: 301 RLPVFTQLCSEKLQQE 316
           RLPVFTQLCSEKLQQE
Sbjct: 301 RLPVFTQLCSEKLQQE 313

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BLAST of HG10022392 vs. NCBI nr
Match: XP_004148935.1 (uncharacterized protein LOC101215865 [Cucumis sativus] >XP_011658933.1 uncharacterized protein LOC101215865 [Cucumis sativus] >XP_031744249.1 uncharacterized protein LOC116404958 [Cucumis sativus] >XP_031744250.1 uncharacterized protein LOC116404958 [Cucumis sativus] >KAE8645918.1 hypothetical protein Csa_011889 [Cucumis sativus])

HSP 1 Score: 504.6 bits (1298), Expect = 6.2e-139
Identity = 264/318 (83.02%), Postives = 279/318 (87.74%), Query Frame = 0


Query: 1   MEDHQGKRSSKTSIIKGLNASVRPINIQMDNHLVIGGTRHYHQETNCKSPTIFDRYTIMN 60
           MED QGKRSSKTSIIKGLNAS+RP+NIQMDNHLVIGGTRHYHQETNCKSPTI D Y IMN
Sbjct: 1   MEDRQGKRSSKTSIIKGLNASIRPMNIQMDNHLVIGGTRHYHQETNCKSPTIVDCYNIMN 60

Query: 61  HYASSTPGSNSFGPRGTGSPLSPLSAIENLETPRIRSPQIYGTPVKVDEEVIVMDGILIN 120
           HYASST GSNSFG RG G  LSPLSAIENLETP IRSPQIYGTP+KVDEEVIVMDGILI+
Sbjct: 61  HYASSTSGSNSFGSRGAGLSLSPLSAIENLETPPIRSPQIYGTPMKVDEEVIVMDGILIS 120

Query: 121 SIPGGAKTVRSPLDSGSGGGLLSGKNQYRTDICRYWEDSGSCRFGHKCQFAHGKEDLRPG 180
           SI G AKTVRSPLDSGSGGG   GKNQYR+DICRYWEDSG+CRFG+KCQFAHGKEDLRPG
Sbjct: 121 SIHGEAKTVRSPLDSGSGGG---GKNQYRSDICRYWEDSGTCRFGNKCQFAHGKEDLRPG 180

Query: 181 RLPVRTKPKFNEAYGSKFRNNHLQTGIAATTT---QSNSVDTITKTEISKREGLGTTSSA 240
           RLPVRTK KF+E YGSKFRNNH  TGIAATTT    SN VDTITKTE+SKR GL  TSS 
Sbjct: 181 RLPVRTKTKFSETYGSKFRNNHSLTGIAATTTTQSNSNLVDTITKTELSKR-GLTPTSST 240

Query: 241 SIRHMNTNTKPSLISTISIIDWSPEDDGIKIAVPETESTKREDVDQHIHGVLYGSTTERT 300
              H  TN  P+LISTISII+WSPEDDGIKIAVP TESTKREDV+QHIH VLYGSTTERT
Sbjct: 241 LKGH--TNNNPTLISTISIINWSPEDDGIKIAVPGTESTKREDVNQHIHEVLYGSTTERT 300

Query: 301 KTRLPVFTQLCSEKLQQE 316
           K RLPVF Q+CSE+LQ+E
Sbjct: 301 KKRLPVFVQICSEELQEE 312

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BLAST of HG10022392 vs. NCBI nr
Match: TYK07952.1 (tristetraprolin-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 499.6 bits (1285), Expect = 2.0e-137
Identity = 262/329 (79.64%), Postives = 281/329 (85.41%), Query Frame = 0


Query: 1   MEDHQGKRSSKTSIIKGLNASVRPINIQMDNHLVIGGTRHYHQETNCKSPTIFDRYTIMN 60
           MED Q KRSS+TSIIKGLNAS+RP+NIQMDNHLVIGGTRHYHQETNCKSPTI D Y IMN
Sbjct: 1   MEDRQSKRSSRTSIIKGLNASIRPMNIQMDNHLVIGGTRHYHQETNCKSPTIVDCYNIMN 60

Query: 61  HYASSTPGSNSFGPRGTGSPLSPLSAIENLETPRIRSPQIYGTPVKVDEEVIVMDGILIN 120
           HYASST GSNSFG RG G  LSPLSAIENLETP ++SPQIYGTP+KVDEEVIVMDGILI+
Sbjct: 61  HYASSTSGSNSFGSRGAGLSLSPLSAIENLETPPVKSPQIYGTPMKVDEEVIVMDGILIS 120

Query: 121 SIPGGAKTVRSPLDSGSGGGLLSGKNQYRTDICRYWEDSGSCRFGHKCQFAHGKEDLRPG 180
           SI G AKTVRSPLDSGSGGG   GKNQYR+DICRYWEDSGSCRFG+KCQFAHGKEDLRPG
Sbjct: 121 SIHGEAKTVRSPLDSGSGGG---GKNQYRSDICRYWEDSGSCRFGNKCQFAHGKEDLRPG 180

Query: 181 RLPVRTKPKFNEAYGSKFRNNHLQTGIAATTT---QSNSVDTITKTEISKREGLGTTSSA 240
           RLPVRTK KF+E YGSKFRNNH  +GI+ATTT    SN VDTITKTE+SKREGL  TSS+
Sbjct: 181 RLPVRTKTKFSETYGSKFRNNHSLSGISATTTTQSNSNLVDTITKTELSKREGLTPTSSS 240

Query: 241 SIRHMNTNTKPSLISTISII-----------DWSPEDDGIKIAVPETESTKREDVDQHIH 300
             R   TNT P+LISTISII           DWSPEDDGIKI VP TESTKREDV+QHIH
Sbjct: 241 LKR--QTNTNPTLISTISIIDWSPEDDDGIKDWSPEDDGIKIVVPGTESTKREDVNQHIH 300

Query: 301 GVLYGSTTERTKTRLPVFTQLCSEKLQQE 316
            VLYGSTTERTK RLPVF+QLCSE+LQ+E
Sbjct: 301 EVLYGSTTERTKKRLPVFSQLCSEELQEE 324

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BLAST of HG10022392 vs. NCBI nr
Match: XP_022154583.1 (uncharacterized protein LOC111021811 [Momordica charantia] >XP_022154584.1 uncharacterized protein LOC111021811 [Momordica charantia])

HSP 1 Score: 434.9 bits (1117), Expect = 6.0e-118
Identity = 236/365 (64.66%), Postives = 267/365 (73.15%), Query Frame = 0


Query: 1   MEDHQGKRSSKTSIIKGLNASVRPINIQMDNHLVIGGTRHYHQETNCKSPTIFDRYT--- 60
           ME  QGKRSSKTSIIKGLN +V PINIQMDNHLVIGGT HYHQETNCKSPT+ DRY+   
Sbjct: 1   MEGRQGKRSSKTSIIKGLNVTVPPINIQMDNHLVIGGTGHYHQETNCKSPTMLDRYSEKL 60

Query: 61  ------------------------------------------IMNHYASSTPGSNSFGPR 120
                                                     IMNHYASST  S+SFG R
Sbjct: 61  DRSTSIVRYFRSRSPVIGKLPSVGDTFSTPVPDVINANYRSAIMNHYASSTSRSSSFGSR 120

Query: 121 GTGSPLSPLSAIENLETPRIRSPQIYGTPVKVDEEVIVMDGILINSIPGGAKTVRSPLDS 180
           G GS LSPLSAIENLETP  RSPQIYGTPVKVDEEVIVMDGILI+S+PGGAKT+RS  +S
Sbjct: 121 GGGSSLSPLSAIENLETPTARSPQIYGTPVKVDEEVIVMDGILISSVPGGAKTMRSASES 180

Query: 181 GSGGGLLSGKNQYRTDICRYWEDSGSCRFGHKCQFAHGKEDLRPGRLPVRTKPKFNEAY- 240
            +GGG LSGKN YRTDICR WEDSGSCR+GHKCQFAHGKE+LRP RLPV+ KPK +++Y 
Sbjct: 181 VTGGGSLSGKNLYRTDICRSWEDSGSCRYGHKCQFAHGKEELRPARLPVKNKPKVSDSYC 240

Query: 241 ----GSKFRNNHLQTGIAATTTQSNSVDTITKTEISKREGLGTTSSASIRHMNTNTKPSL 300
                SKF ++H    +A TT+ S  +DTI  +E+S+ EG     + SIRHM  NTKPSL
Sbjct: 241 TTYGHSKFCDSH---ALAVTTSHSYVIDTINNSEVSRSEG---GKTMSIRHM--NTKPSL 300

Query: 301 ISTISIIDWSPEDDGIKIAVPETESTKREDVDQHIHGVLYGSTTERTKTRLPVFTQLCSE 316
           ISTISI+DWSPEDDGIKI +P ++STKREDV+Q+IH VLYGST ERTK RLPVFTQLCSE
Sbjct: 301 ISTISIVDWSPEDDGIKIVLPNSKSTKREDVNQYIHEVLYGSTNERTKKRLPVFTQLCSE 357

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BLAST of HG10022392 vs. NCBI nr
Match: XP_023536031.1 (uncharacterized protein LOC111797287 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023536040.1 uncharacterized protein LOC111797287 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 387.9 bits (995), Expect = 8.4e-104
Identity = 221/362 (61.05%), Postives = 247/362 (68.23%), Query Frame = 0


Query: 1   MEDHQGKRSSKTSIIKGLNASVRPINIQMDNHLVIGGTRHYHQETNCKSPTIFDRY---- 60
           MED QGKRSSK +IIKGLNA+VRPI IQMDNHLVIGGT HYHQETN K PTI DRY    
Sbjct: 1   MEDRQGKRSSKAAIIKGLNATVRPIKIQMDNHLVIGGTGHYHQETNSKIPTILDRYAEKH 60

Query: 61  -----------------------------------------TIMNHYASSTPGSNSFGPR 120
                                                    +I+NH+ASST GS+SFG R
Sbjct: 61  ERSTPIVSYFRSRSPVVGKLPSVGDTFSTPVADVINANYRSSIINHFASSTSGSSSFGSR 120

Query: 121 GTGSPLSPLSAIENLETPRIRSPQIYGTPVKVDEEVIVMDGILINSIPGGAKTVRSPLDS 180
             GS LSPLSAIENLET  +RSPQIYGTP+KV EEVIVMD ILI+S+ GGAKT++S LDS
Sbjct: 121 RGGSSLSPLSAIENLETTPVRSPQIYGTPLKVHEEVIVMDEILISSVHGGAKTLKSALDS 180

Query: 181 GSGGGLLSGKNQYRTDICRYWEDSGSCRFGHKCQFAHGKEDLRPGRLPVRTKPKFNEAY- 240
           GSGGG    KNQYRTDICR WEDSGSCRFGHKCQFAHGKE+LRP  LP++TKPKF E Y 
Sbjct: 181 GSGGGSSLSKNQYRTDICRSWEDSGSCRFGHKCQFAHGKEELRPVHLPLKTKPKFGEPYL 240

Query: 241 --GSKFRNNHLQTGIAATTTQSNSVDTITKTEISKREGLGTTSSASIRHMNTNTKPSLIS 300
             G K RNNH  TGIAA TTQSNS+D   KTE+S+R      S  SI ++NT        
Sbjct: 241 THGLKSRNNHSLTGIAA-TTQSNSLDITFKTELSRR----GHSINSIHNLNT-------- 300

Query: 301 TISIIDWSPEDDGIKIAVPETESTKREDVDQHIHGVLYGSTTERTKTRLPVFTQLCSEKL 315
                DWSPEDD I++ VPET+ST R DVDQHIH VLYGSTTERTK RL VF QLCS + 
Sbjct: 301 -----DWSPEDDDIEVVVPETKST-RGDVDQHIHEVLYGSTTERTKKRLLVFVQLCSSQQ 343

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BLAST of HG10022392 vs. ExPASy Swiss-Prot
Match: Q5ISE2 (mRNA decay activator protein ZFP36L3 OS=Mus musculus OX=10090 GN=Zfp36l3 PE=1 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 3.4e-07
Identity = 22/42 (52.38%), Postives = 32/42 (76.19%), Query Frame = 0


Query: 137 SGGGLLSGKNQYRTDICRYWEDSGSCRFGHKCQFAHGKEDLR 179
           SG   L+   +Y+T++CR +E+SG C++GHKCQFAHG  +LR
Sbjct: 112 SGSSSLATSERYKTELCRPFEESGICKYGHKCQFAHGYRELR 153

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BLAST of HG10022392 vs. ExPASy Swiss-Prot
Match: P47974 (mRNA decay activator protein ZFP36L2 OS=Homo sapiens OX=9606 GN=ZFP36L2 PE=1 SV=3)

HSP 1 Score: 55.5 bits (132), Expect = 1.3e-06
Identity = 21/41 (51.22%), Postives = 31/41 (75.61%), Query Frame = 0


Query: 138 GGGLLSGKNQYRTDICRYWEDSGSCRFGHKCQFAHGKEDLR 179
           GGG      +Y+T++CR +E+SG+C++G KCQFAHG  +LR
Sbjct: 144 GGGSQINSTRYKTELCRPFEESGTCKYGEKCQFAHGFHELR 184

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BLAST of HG10022392 vs. ExPASy Swiss-Prot
Match: Q9XV46 (CCCH-type zinc finger protein moe-3 OS=Caenorhabditis elegans OX=6239 GN=moe-3 PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.2e-06
Identity = 24/60 (40.00%), Postives = 36/60 (60.00%), Query Frame = 0


Query: 148 YRTDICRYWEDSGSCRFGHKCQFAHGKEDLRPGRLPVRTKPKFNEAYGSKFRNNHLQTGI 207
           Y+T IC+ W +S +C F   C+FAHG+E+LRP +L  R     N  Y +K  + +  TG+
Sbjct: 131 YKTVICQAWLESKTCTFAENCRFAHGEEELRPAKLESRQ----NNKYKTKLCDKYTTTGL 186

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BLAST of HG10022392 vs. ExPASy Swiss-Prot
Match: P47979 (Zinc finger protein zfs1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=zfs1 PE=1 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.2e-06
Identity = 27/55 (49.09%), Postives = 38/55 (69.09%), Query Frame = 0


Query: 132 PLDSGSGGGLL-SGKNQ-YRTDICRYWEDSGSCRFGHKCQFAHGKEDLR-PGRLP 184
           P  SGS  G+  +GK   Y+T+ C+ W+ SG+CR+G KCQFAHG ++L+ P R P
Sbjct: 309 PHGSGSSNGVAPNGKRALYKTEPCKNWQISGTCRYGSKCQFAHGNQELKEPPRHP 363

[Close]

BLAST of HG10022392 vs. ExPASy Swiss-Prot
Match: P47980 (Protein TIS11 OS=Drosophila melanogaster OX=7227 GN=Tis11 PE=2 SV=2)

HSP 1 Score: 54.3 bits (129), Expect = 2.9e-06
Identity = 22/55 (40.00%), Postives = 35/55 (63.64%), Query Frame = 0


Query: 146 NQYRTDICRYWEDSGSCRFGHKCQFAHGKEDLRPGRLPVRTKPKFNEAYGSKFRN 201
           ++Y+T++CR +E++G C++G KCQFAHG  +LR     V   PK+   Y   F +
Sbjct: 134 SRYKTELCRPFEEAGECKYGEKCQFAHGSHELR----NVHRHPKYKTEYCRTFHS 184

[Close]

BLAST of HG10022392 vs. ExPASy TrEMBL
Match: A0A5D3C9H3 (Tristetraprolin-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00710 PE=4 SV=1)

HSP 1 Score: 499.6 bits (1285), Expect = 9.6e-138
Identity = 262/329 (79.64%), Postives = 281/329 (85.41%), Query Frame = 0


Query: 1   MEDHQGKRSSKTSIIKGLNASVRPINIQMDNHLVIGGTRHYHQETNCKSPTIFDRYTIMN 60
           MED Q KRSS+TSIIKGLNAS+RP+NIQMDNHLVIGGTRHYHQETNCKSPTI D Y IMN
Sbjct: 1   MEDRQSKRSSRTSIIKGLNASIRPMNIQMDNHLVIGGTRHYHQETNCKSPTIVDCYNIMN 60

Query: 61  HYASSTPGSNSFGPRGTGSPLSPLSAIENLETPRIRSPQIYGTPVKVDEEVIVMDGILIN 120
           HYASST GSNSFG RG G  LSPLSAIENLETP ++SPQIYGTP+KVDEEVIVMDGILI+
Sbjct: 61  HYASSTSGSNSFGSRGAGLSLSPLSAIENLETPPVKSPQIYGTPMKVDEEVIVMDGILIS 120

Query: 121 SIPGGAKTVRSPLDSGSGGGLLSGKNQYRTDICRYWEDSGSCRFGHKCQFAHGKEDLRPG 180
           SI G AKTVRSPLDSGSGGG   GKNQYR+DICRYWEDSGSCRFG+KCQFAHGKEDLRPG
Sbjct: 121 SIHGEAKTVRSPLDSGSGGG---GKNQYRSDICRYWEDSGSCRFGNKCQFAHGKEDLRPG 180

Query: 181 RLPVRTKPKFNEAYGSKFRNNHLQTGIAATTT---QSNSVDTITKTEISKREGLGTTSSA 240
           RLPVRTK KF+E YGSKFRNNH  +GI+ATTT    SN VDTITKTE+SKREGL  TSS+
Sbjct: 181 RLPVRTKTKFSETYGSKFRNNHSLSGISATTTTQSNSNLVDTITKTELSKREGLTPTSSS 240

Query: 241 SIRHMNTNTKPSLISTISII-----------DWSPEDDGIKIAVPETESTKREDVDQHIH 300
             R   TNT P+LISTISII           DWSPEDDGIKI VP TESTKREDV+QHIH
Sbjct: 241 LKR--QTNTNPTLISTISIIDWSPEDDDGIKDWSPEDDGIKIVVPGTESTKREDVNQHIH 300

Query: 301 GVLYGSTTERTKTRLPVFTQLCSEKLQQE 316
            VLYGSTTERTK RLPVF+QLCSE+LQ+E
Sbjct: 301 EVLYGSTTERTKKRLPVFSQLCSEELQEE 324

[Close]

BLAST of HG10022392 vs. ExPASy TrEMBL
Match: A0A6J1DKP7 (uncharacterized protein LOC111021811 OS=Momordica charantia OX=3673 GN=LOC111021811 PE=4 SV=1)

HSP 1 Score: 434.9 bits (1117), Expect = 2.9e-118
Identity = 236/365 (64.66%), Postives = 267/365 (73.15%), Query Frame = 0


Query: 1   MEDHQGKRSSKTSIIKGLNASVRPINIQMDNHLVIGGTRHYHQETNCKSPTIFDRYT--- 60
           ME  QGKRSSKTSIIKGLN +V PINIQMDNHLVIGGT HYHQETNCKSPT+ DRY+   
Sbjct: 1   MEGRQGKRSSKTSIIKGLNVTVPPINIQMDNHLVIGGTGHYHQETNCKSPTMLDRYSEKL 60

Query: 61  ------------------------------------------IMNHYASSTPGSNSFGPR 120
                                                     IMNHYASST  S+SFG R
Sbjct: 61  DRSTSIVRYFRSRSPVIGKLPSVGDTFSTPVPDVINANYRSAIMNHYASSTSRSSSFGSR 120

Query: 121 GTGSPLSPLSAIENLETPRIRSPQIYGTPVKVDEEVIVMDGILINSIPGGAKTVRSPLDS 180
           G GS LSPLSAIENLETP  RSPQIYGTPVKVDEEVIVMDGILI+S+PGGAKT+RS  +S
Sbjct: 121 GGGSSLSPLSAIENLETPTARSPQIYGTPVKVDEEVIVMDGILISSVPGGAKTMRSASES 180

Query: 181 GSGGGLLSGKNQYRTDICRYWEDSGSCRFGHKCQFAHGKEDLRPGRLPVRTKPKFNEAY- 240
            +GGG LSGKN YRTDICR WEDSGSCR+GHKCQFAHGKE+LRP RLPV+ KPK +++Y 
Sbjct: 181 VTGGGSLSGKNLYRTDICRSWEDSGSCRYGHKCQFAHGKEELRPARLPVKNKPKVSDSYC 240

Query: 241 ----GSKFRNNHLQTGIAATTTQSNSVDTITKTEISKREGLGTTSSASIRHMNTNTKPSL 300
                SKF ++H    +A TT+ S  +DTI  +E+S+ EG     + SIRHM  NTKPSL
Sbjct: 241 TTYGHSKFCDSH---ALAVTTSHSYVIDTINNSEVSRSEG---GKTMSIRHM--NTKPSL 300

Query: 301 ISTISIIDWSPEDDGIKIAVPETESTKREDVDQHIHGVLYGSTTERTKTRLPVFTQLCSE 316
           ISTISI+DWSPEDDGIKI +P ++STKREDV+Q+IH VLYGST ERTK RLPVFTQLCSE
Sbjct: 301 ISTISIVDWSPEDDGIKIVLPNSKSTKREDVNQYIHEVLYGSTNERTKKRLPVFTQLCSE 357

[Close]

BLAST of HG10022392 vs. ExPASy TrEMBL
Match: A0A0A0K529 (C3H1-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G103290 PE=4 SV=1)

HSP 1 Score: 398.3 bits (1022), Expect = 3.0e-107
Identity = 212/260 (81.54%), Postives = 225/260 (86.54%), Query Frame = 0


Query: 59  MNHYASSTPGSNSFGPRGTGSPLSPLSAIENLETPRIRSPQIYGTPVKVDEEVIVMDGIL 118
           MNHYASST GSNSFG RG G  LSPLSAIENLETP IRSPQIYGTP+KVDEEVIVMDGIL
Sbjct: 1   MNHYASSTSGSNSFGSRGAGLSLSPLSAIENLETPPIRSPQIYGTPMKVDEEVIVMDGIL 60

Query: 119 INSIPGGAKTVRSPLDSGSGGGLLSGKNQYRTDICRYWEDSGSCRFGHKCQFAHGKEDLR 178
           I+SI G AKTVRSPLDSGSGGG   GKNQYR+DICRYWEDSG+CRFG+KCQFAHGKEDLR
Sbjct: 61  ISSIHGEAKTVRSPLDSGSGGG---GKNQYRSDICRYWEDSGTCRFGNKCQFAHGKEDLR 120

Query: 179 PGRLPVRTKPKFNEAYGSKFRNNHLQTGIAATTT---QSNSVDTITKTEISKREGLGTTS 238
           PGRLPVRTK KF+E YGSKFRNNH  TGIAATTT    SN VDTITKTE+SKR GL  TS
Sbjct: 121 PGRLPVRTKTKFSETYGSKFRNNHSLTGIAATTTTQSNSNLVDTITKTELSKR-GLTPTS 180

Query: 239 SASIRHMNTNTKPSLISTISIIDWSPEDDGIKIAVPETESTKREDVDQHIHGVLYGSTTE 298
           S    H  TN  P+LISTISII+WSPEDDGIKIAVP TESTKREDV+QHIH VLYGSTTE
Sbjct: 181 STLKGH--TNNNPTLISTISIINWSPEDDGIKIAVPGTESTKREDVNQHIHEVLYGSTTE 240

Query: 299 RTKTRLPVFTQLCSEKLQQE 316
           RTK RLPVF Q+CSE+LQ+E
Sbjct: 241 RTKKRLPVFVQICSEELQEE 254

[Close]

BLAST of HG10022392 vs. ExPASy TrEMBL
Match: A0A6J1IEX1 (uncharacterized protein LOC111472616 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111472616 PE=4 SV=1)

HSP 1 Score: 385.2 bits (988), Expect = 2.6e-103
Identity = 219/362 (60.50%), Postives = 246/362 (67.96%), Query Frame = 0


Query: 1   MEDHQGKRSSKTSIIKGLNASVRPINIQMDNHLVIGGTRHYHQETNCKSPTIFDRY---- 60
           MED QGKRSSK SIIKGLN +VRPI IQMDNHLVIGGT HYHQETN K PTI DRY    
Sbjct: 1   MEDRQGKRSSKASIIKGLNPTVRPIKIQMDNHLVIGGTGHYHQETNSKIPTILDRYAEKH 60

Query: 61  -----------------------------------------TIMNHYASSTPGSNSFGPR 120
                                                    +I+NH+ASST GS+SFG R
Sbjct: 61  DRSTPIVSYFRSRSPVVGKLPSAGDTFSTPVADVINASYRSSIINHFASSTSGSSSFGSR 120

Query: 121 GTGSPLSPLSAIENLETPRIRSPQIYGTPVKVDEEVIVMDGILINSIPGGAKTVRSPLDS 180
             GS LSPLSA+ENLET  +RSPQIYGTP+KV EEVIVMD ILI+S+ GGAKT++S LDS
Sbjct: 121 RGGSSLSPLSALENLETTPVRSPQIYGTPLKVHEEVIVMDEILISSVHGGAKTLKSALDS 180

Query: 181 GSGGGLLSGKNQYRTDICRYWEDSGSCRFGHKCQFAHGKEDLRPGRLPVRTKPKFNEAY- 240
           GSGGG    KNQYRTDICR WEDSGSCRFGHKCQFAHGKE+LRP  LPV+TKPKF E Y 
Sbjct: 181 GSGGGSSLSKNQYRTDICRSWEDSGSCRFGHKCQFAHGKEELRPVHLPVKTKPKFGEPYL 240

Query: 241 --GSKFRNNHLQTGIAATTTQSNSVDTITKTEISKREGLGTTSSASIRHMNTNTKPSLIS 300
             G K RNNH  TGIAA TTQSNS+    KTE+++R      S  SI ++NT        
Sbjct: 241 THGLKSRNNHSLTGIAA-TTQSNSLYATFKTELNRR----GHSINSIHNLNT-------- 300

Query: 301 TISIIDWSPEDDGIKIAVPETESTKREDVDQHIHGVLYGSTTERTKTRLPVFTQLCSEKL 315
                DWSP+DDGI++ VPET+ST R DVDQHI  VLYGSTTER K RLPVF QLCS +L
Sbjct: 301 -----DWSPDDDGIEVVVPETKST-RGDVDQHILEVLYGSTTERAKKRLPVFVQLCSSRL 343

[Close]

BLAST of HG10022392 vs. ExPASy TrEMBL
Match: A0A6J1ICU5 (uncharacterized protein LOC111472626 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111472626 PE=4 SV=1)

HSP 1 Score: 384.8 bits (987), Expect = 3.5e-103
Identity = 219/362 (60.50%), Postives = 246/362 (67.96%), Query Frame = 0


Query: 1   MEDHQGKRSSKTSIIKGLNASVRPINIQMDNHLVIGGTRHYHQETNCKSPTIFDRY---- 60
           MED QGKRSSK SIIKGLN +VRPI IQMDNHLVIGGT HYHQETN K PTI DRY    
Sbjct: 1   MEDRQGKRSSKPSIIKGLNPTVRPIKIQMDNHLVIGGTGHYHQETNSKIPTILDRYAEKH 60

Query: 61  -----------------------------------------TIMNHYASSTPGSNSFGPR 120
                                                    +I+NH+ASST GS+SFG R
Sbjct: 61  DRSTPIVSYFRSRSPVVGKLPSAGDTCSTPVADVINASYRSSIINHFASSTSGSSSFGSR 120

Query: 121 GTGSPLSPLSAIENLETPRIRSPQIYGTPVKVDEEVIVMDGILINSIPGGAKTVRSPLDS 180
             GS LSPLSA+ENLET  +RSPQIYGTP+KV EEVIVMD ILI+S+ GGAKT++S LDS
Sbjct: 121 RGGSSLSPLSALENLETTPVRSPQIYGTPLKVHEEVIVMDEILISSVHGGAKTLKSALDS 180

Query: 181 GSGGGLLSGKNQYRTDICRYWEDSGSCRFGHKCQFAHGKEDLRPGRLPVRTKPKFNEAY- 240
           GSGGG    KNQYRTDICR WEDSGSCRFGHKCQFAHGKE+LRP  LPV+TKPKF E Y 
Sbjct: 181 GSGGGSSLSKNQYRTDICRSWEDSGSCRFGHKCQFAHGKEELRPVHLPVKTKPKFGEPYL 240

Query: 241 --GSKFRNNHLQTGIAATTTQSNSVDTITKTEISKREGLGTTSSASIRHMNTNTKPSLIS 300
             G K RNNH  TGIAA TTQSNS+    KTE+++R      S  SI ++NT        
Sbjct: 241 THGLKSRNNHSLTGIAA-TTQSNSLYATFKTELNRR----GHSINSIHNLNT-------- 300

Query: 301 TISIIDWSPEDDGIKIAVPETESTKREDVDQHIHGVLYGSTTERTKTRLPVFTQLCSEKL 315
                DWSP+DDGI++ VPET+ST R DVDQHI  VLYGSTTER K RLPVF QLCS +L
Sbjct: 301 -----DWSPDDDGIEVVVPETKST-RGDVDQHILEVLYGSTTERAKKRLPVFVQLCSSRL 343

[Close]

BLAST of HG10022392 vs. TAIR 10
Match: AT1G66810.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 47.8 bits (112), Expect = 1.9e-05
Identity = 15/31 (48.39%), Postives = 25/31 (80.65%), Query Frame = 0


Query: 149 RTDICRYWEDSGSCRFGHKCQFAHGKEDLRP 180
           +T++C  W+++G+C +G  CQFAHG ++LRP
Sbjct: 234 KTELCNKWQETGACCYGDNCQFAHGIDELRP 264

[Close]

BLAST of HG10022392 vs. TAIR 10
Match: AT1G68200.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 47.4 bits (111), Expect = 2.5e-05
Identity = 15/31 (48.39%), Postives = 25/31 (80.65%), Query Frame = 0


Query: 149 RTDICRYWEDSGSCRFGHKCQFAHGKEDLRP 180
           +T++C  W+++G+C +G  CQFAHG ++LRP
Sbjct: 224 KTELCNKWQETGTCPYGDHCQFAHGIKELRP 254

[Close]

BLAST of HG10022392 vs. TAIR 10
Match: AT1G68200.2 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 47.4 bits (111), Expect = 2.5e-05
Identity = 15/31 (48.39%), Postives = 25/31 (80.65%), Query Frame = 0


Query: 149 RTDICRYWEDSGSCRFGHKCQFAHGKEDLRP 180
           +T++C  W+++G+C +G  CQFAHG ++LRP
Sbjct: 223 KTELCNKWQETGTCPYGDHCQFAHGIKELRP 253

[Close]

BLAST of HG10022392 vs. TAIR 10
Match: AT1G32360.1 (Zinc finger (CCCH-type) family protein )

HSP 1 Score: 46.6 bits (109), Expect = 4.3e-05
Identity = 21/44 (47.73%), Postives = 28/44 (63.64%), Query Frame = 0


Query: 135 SGSGGGL-LSGKNQYRTDICRYWEDSGSCRFGHKCQFAHGKEDL 178
           SGSG G+ +   + ++T IC  WE +G C FG KC FAHG  +L
Sbjct: 247 SGSGSGIQILKPSNWKTRICNKWEITGYCPFGAKCHFAHGAAEL 290

[Close]

BLAST of HG10022392 vs. TAIR 10
Match: AT1G01350.1 (Zinc finger (CCCH-type/C3HC4-type RING finger) family protein )

HSP 1 Score: 43.9 bits (102), Expect = 2.8e-04
Identity = 20/61 (32.79%), Postives = 34/61 (55.74%), Query Frame = 0


Query: 127 KTVRSPLDSGSGGGL-------LSGKNQYRTDICRYWEDSGSCRFGHKCQFAHGKEDLRP 181
           +T+ S    GS G L       +S +  Y+ DIC+ ++++G C +G  C+F H + D +P
Sbjct: 173 QTISSEKAGGSHGPLRASAHIRVSARFDYQPDICKDYKETGYCGYGDSCKFLHDRGDYKP 232

The following BLAST results are available for this feature:

BLAST of HG10022392 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038897010.1	8.6e-149	85.76	uncharacterized protein LOC120085195 [Benincasa hispida] >XP_038897011.1 unchara...	[more]
XP_004148935.1	6.2e-139	83.02	uncharacterized protein LOC101215865 [Cucumis sativus] >XP_011658933.1 uncharact...	[more]
TYK07952.1	2.0e-137	79.64	tristetraprolin-like isoform X2 [Cucumis melo var. makuwa]	[more]
XP_022154583.1	6.0e-118	64.66	uncharacterized protein LOC111021811 [Momordica charantia] >XP_022154584.1 uncha...	[more]
XP_023536031.1	8.4e-104	61.05	uncharacterized protein LOC111797287 isoform X1 [Cucurbita pepo subsp. pepo] >XP...	[more]

BLAST of HG10022392 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5ISE2	3.4e-07	52.38	mRNA decay activator protein ZFP36L3 OS=Mus musculus OX=10090 GN=Zfp36l3 PE=1 SV...	[more]
P47974	1.3e-06	51.22	mRNA decay activator protein ZFP36L2 OS=Homo sapiens OX=9606 GN=ZFP36L2 PE=1 SV=...	[more]
Q9XV46	2.2e-06	40.00	CCCH-type zinc finger protein moe-3 OS=Caenorhabditis elegans OX=6239 GN=moe-3 P...	[more]
P47979	2.2e-06	49.09	Zinc finger protein zfs1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) ...	[more]
P47980	2.9e-06	40.00	Protein TIS11 OS=Drosophila melanogaster OX=7227 GN=Tis11 PE=2 SV=2	[more]

BLAST of HG10022392 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C9H3	9.6e-138	79.64	Tristetraprolin-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A6J1DKP7	2.9e-118	64.66	uncharacterized protein LOC111021811 OS=Momordica charantia OX=3673 GN=LOC111021...	[more]
A0A0A0K529	3.0e-107	81.54	C3H1-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G103290 P...	[more]
A0A6J1IEX1	2.6e-103	60.50	uncharacterized protein LOC111472616 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1ICU5	3.5e-103	60.50	uncharacterized protein LOC111472626 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of HG10022392 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G66810.1	1.9e-05	48.39	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT1G68200.1	2.5e-05	48.39	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT1G68200.2	2.5e-05	48.39	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT1G32360.1	4.3e-05	47.73	Zinc finger (CCCH-type) family protein	[more]
AT1G01350.1	2.8e-04	32.79	Zinc finger (CCCH-type/C3HC4-type RING finger) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000571	Zinc finger, CCCH-type	SMART	SM00356	c3hfinal6	coord: 147..174 e-value: 1.0E-6 score: 38.3
IPR000571	Zinc finger, CCCH-type	PFAM	PF00642	zf-CCCH	coord: 148..174 e-value: 1.4E-7 score: 31.3
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 147..175 score: 16.126343
None	No IPR available	GENE3D	4.10.1000.10		coord: 142..180 e-value: 1.8E-15 score: 58.0
None	No IPR available	PANTHER	PTHR12547	CCCH ZINC FINGER/TIS11-RELATED	coord: 8..307
None	No IPR available	PANTHER	PTHR12547:SF142	ZINC FINGER C-X8-C-X5-C-X3-H TYPE PROTEIN	coord: 8..307
IPR036855	Zinc finger, CCCH-type superfamily	SUPERFAMILY	90229	CCCH zinc finger	coord: 147..179

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10022392.1	HG10022392.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046872	metal ion binding