HG10022390 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10022390
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Cleavage and polyadenylation specificity factor subunit 6
Location	Chr05: 23834466 .. 23836589 (+)
RNA-Seq Expression	HG10022390
Synteny	HG10022390

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGAAGGTGAGGGTGGGTTCGGTGAGGGTGTGGATCAGATTGATCAGTTTCACCGGAACGAGGCCATTTCAGCCGTTGCTGATGATGGTTTCTTGGGCGAAGATGAGGATGAATACGAGGACTTGTACAACGATGTTAATGTCGGGGAGGGGTTTCTTCAGTCGTTGAGGAAGAACGATGATTTGGGATTCAAGAGGGAGGAGGAGCCCAAGATGGAGCCTCCTGCACCTGTACCACCCAGTTCCGATGCTTCCATACCTGGTGTTGGTGGAGGTGCGACTGAAGTTGCTCGTTTAGGAGATAGTGGGCACGGTGTATCGGAGAGAGTAACCGAGGGTTACAATCAGATTCCAGATTTAAGAACGAATGAGATGGCTATCAGAGGTGGGGTGGGATCGGGGCCGCCTGTAGCCGTCGGAGGTGGGATTAGGGTTGAATTAGGGCAAGGGAGTAAAACAAATGAGTTGGAGGAGCGAAGTAGTAATAACGTAGCTGCACATCAGGCTCAACAACAGCAACAGCAGCAGCAGCCACAGCCACAGCCGCTGCACCACCACCAACCACCTCAGAGCGGAGTCTTAGGAAATCCTGGAAATGTAGAAAATGAAGGTTTGCTAAGGCAAGGTGGTGGAGTAAATGTAAATGGGGTTGGTGGAAATGGGTTCGGTAATATGGGGAGTGCAGGTGGAGGTGGCGGTGGTACGATTTTATTTGTTGGTGATTTACATTGGTGGACTACAGATGCGGAGCTGGAGGCGGAACTCTGTAAGTATGGTCCGTTGAAGGAGGTCAAGTTTTATGACGAGAAAGCCAGTGGAAAATCAAAAGGCTATTGCCAGGTTGAGTTTTATGATCCTTCTGCTGCCACAGCTTGCAAGGAGGGAATGAATGGGCATCTTTTTAATGGACGTCCATGTGTTGTTGCATATGCGTCACCGTTTAGTGTTAAGAGGATGGGAGAAGCCCAAGTGAATAGGAACCAACAGATGTCCCAAGCTACTAATCCTCAAGCAAGGAGAGGTCCTAATGAAGCTGTAGGTAAAATTGGTGGAAGTAGCATTGCAACGGGTGGTAACTATCAAGGTGGTGATAACAATAGAGGTTCTGGGAGAGGTAATTGGGGAAGAGGTAATGCACATGGAATGGGAGGTCGAGGACCGGCTGGCCCAATGAGGAGTAGGGGTGGTGGGATGGGTGGCAGAGGTATAATGGGAAATGGTGGAAATGGATTTGGCCAAGGAATTGGTGTTACCCCACCTTTATTGCATCCGCAGTCAATGATGGGTCAAGGTTTTGATCCATCTTTTGGTGCACCCATGGGAAGAATGGGCACATATGGTGGTTTTCCTGGAGCTCCGGCTCCCCCCTTCTCTGGAATTTTATCGTCCTTTCCCCCAGTTGGGGGTGTTGGCCTTCCTGGTGTAGCTCCTCATGTGAACCCAGCATTTTTTGGAAGAGGTATGCCTATGAATGGAATGGGGATGATGCCAACATCGGGTGTTGATGGGCCTAATATGGGAATGTGGTCTGATCCTAGTATGGGTGGATGGGGCAGTGAAGAGCATGGTGGAGGGAGAGCTGATGAGTCTAGTTATGGAGAAGAAGCTGGTTCTGACCAGCAATATGGCGAAGGCAGCCATGAAAGAGGGGCGTGGGCAAATTCTGCGAAGGAGAAAGATAGAGGCTCTGAAAGGGACTGGTCACAGTCTTCTGATAGAAGGTATCGAGATGATAGAGAGAGATCTAAAGAAAAAGATCCGGGGCCTGACCATGATTGGCCAGATAGAAGGCCACGTGATGATAGAGATATAGGGCGTGAAAGGGATAAAGATAGGGATCGGGATAGGGATAGAGAACGATCTCGAGATTATGAGCGTGGCCATCATGATCGTGATCGTGAACGTGACAGGGATCGTGACCGTGATAGGTACAAGGAAGATAGGGACAGATTTTCTGATCATCATAGGTACAGAGACCGGGAACCAGATCATGAGGAGGATTGGGAAAGGGGACGGTCATCAAGGACTCATAGCAAGTCCCGATTATCGCAAGAAGAAGAAAATCGCTCTAGATCAAGGGATGCTGATTATGGGAAGAGGCGGAGGCTTACTTCTGAATAG

mRNA sequence

ATGGATGAAGGTGAGGGTGGGTTCGGTGAGGGTGTGGATCAGATTGATCAGTTTCACCGGAACGAGGCCATTTCAGCCGTTGCTGATGATGGTTTCTTGGGCGAAGATGAGGATGAATACGAGGACTTGTACAACGATGTTAATGTCGGGGAGGGGTTTCTTCAGTCGTTGAGGAAGAACGATGATTTGGGATTCAAGAGGGAGGAGGAGCCCAAGATGGAGCCTCCTGCACCTGTACCACCCAGTTCCGATGCTTCCATACCTGGTGTTGGTGGAGGTGCGACTGAAGTTGCTCGTTTAGGAGATAGTGGGCACGGTGTATCGGAGAGAGTAACCGAGGGTTACAATCAGATTCCAGATTTAAGAACGAATGAGATGGCTATCAGAGGTGGGGTGGGATCGGGGCCGCCTGTAGCCGTCGGAGGAAATCCTGGAAATGTAGAAAATGAAGGTTTGCTAAGGCAAGGTGGTGGAGTAAATGTAAATGGGGTTGGTGGAAATGGGTTCGGTAATATGGGGAGTGCAGGTGGAGGTGGCGGTGGTACGATTTTATTTGTTGGTGATTTACATTGGTGGACTACAGATGCGGAGCTGGAGGCGGAACTCTGTAAGTATGGTCCGTTGAAGGAGGTCAAGTTTTATGACGAGAAAGCCAGTGGAAAATCAAAAGGCTATTGCCAGGTTGAGTTTTATGATCCTTCTGCTGCCACAGCTTGCAAGGAGGGAATGAATGGGCATCTTTTTAATGGACGTCCATGTGTTGTTGCATATGCGTCACCGTTTAGTGTTAAGAGGATGGGAGAAGCCCAAGTGAATAGGAACCAACAGATGTCCCAAGCTACTAATCCTCAAGCAAGGAGAGGTCCTAATGAAGCTGTAGGTAAAATTGGTGGAAGTAGCATTGCAACGGGTGGTAACTATCAAGGTGGTGATAACAATAGAGGTTCTGGGAGAGGTAATTGGGGAAGAGGTAATGCACATGGAATGGGAGGTCGAGGACCGGCTGGCCCAATGAGGAGTAGGGGTGGTGGGATGGGTGGCAGAGGTATAATGGGAAATGGTGGAAATGGATTTGGCCAAGGAATTGGTGTTACCCCACCTTTATTGCATCCGCAGTCAATGATGGGTCAAGGTTTTGATCCATCTTTTGGTGCACCCATGGGAAGAATGGGCACATATGGTGGTTTTCCTGGAGCTCCGGCTCCCCCCTTCTCTGGAATTTTATCGTCCTTTCCCCCAGTTGGGGGTGTTGGCCTTCCTGGTGTAGCTCCTCATGTGAACCCAGCATTTTTTGGAAGAGGTATGCCTATGAATGGAATGGGGATGATGCCAACATCGGGTGTTGATGGGCCTAATATGGGAATGTGGTCTGATCCTAGTATGGGTGGATGGGGCAGTGAAGAGCATGGTGGAGGGAGAGCTGATGAGTCTAGTTATGGAGAAGAAGCTGGTTCTGACCAGCAATATGGCGAAGGCAGCCATGAAAGAGGGGCGTGGGCAAATTCTGCGAAGGAGAAAGATAGAGGCTCTGAAAGGGACTGGTCACAGTCTTCTGATAGAAGGTATCGAGATGATAGAGAGAGATCTAAAGAAAAAGATCCGGGGCCTGACCATGATTGGCCAGATAGAAGGCCACGTGATGATAGAGATATAGGGCGTGAAAGGGATAAAGATAGGGATCGGGATAGGGATAGAGAACGATCTCGAGATTATGAGCGTGGCCATCATGATCGTGATCGTGAACGTGACAGGGATCGTGACCGTGATAGGTACAAGGAAGATAGGGACAGATTTTCTGATCATCATAGGTACAGAGACCGGGAACCAGATCATGAGGAGGATTGGGAAAGGGGACGGTCATCAAGGACTCATAGCAAGTCCCGATTATCGCAAGAAGAAGAAAATCGCTCTAGATCAAGGGATGCTGATTATGGGAAGAGGCGGAGGCTTACTTCTGAATAG

Coding sequence (CDS)

ATGGATGAAGGTGAGGGTGGGTTCGGTGAGGGTGTGGATCAGATTGATCAGTTTCACCGGAACGAGGCCATTTCAGCCGTTGCTGATGATGGTTTCTTGGGCGAAGATGAGGATGAATACGAGGACTTGTACAACGATGTTAATGTCGGGGAGGGGTTTCTTCAGTCGTTGAGGAAGAACGATGATTTGGGATTCAAGAGGGAGGAGGAGCCCAAGATGGAGCCTCCTGCACCTGTACCACCCAGTTCCGATGCTTCCATACCTGGTGTTGGTGGAGGTGCGACTGAAGTTGCTCGTTTAGGAGATAGTGGGCACGGTGTATCGGAGAGAGTAACCGAGGGTTACAATCAGATTCCAGATTTAAGAACGAATGAGATGGCTATCAGAGGTGGGGTGGGATCGGGGCCGCCTGTAGCCGTCGGAGGAAATCCTGGAAATGTAGAAAATGAAGGTTTGCTAAGGCAAGGTGGTGGAGTAAATGTAAATGGGGTTGGTGGAAATGGGTTCGGTAATATGGGGAGTGCAGGTGGAGGTGGCGGTGGTACGATTTTATTTGTTGGTGATTTACATTGGTGGACTACAGATGCGGAGCTGGAGGCGGAACTCTGTAAGTATGGTCCGTTGAAGGAGGTCAAGTTTTATGACGAGAAAGCCAGTGGAAAATCAAAAGGCTATTGCCAGGTTGAGTTTTATGATCCTTCTGCTGCCACAGCTTGCAAGGAGGGAATGAATGGGCATCTTTTTAATGGACGTCCATGTGTTGTTGCATATGCGTCACCGTTTAGTGTTAAGAGGATGGGAGAAGCCCAAGTGAATAGGAACCAACAGATGTCCCAAGCTACTAATCCTCAAGCAAGGAGAGGTCCTAATGAAGCTGTAGGTAAAATTGGTGGAAGTAGCATTGCAACGGGTGGTAACTATCAAGGTGGTGATAACAATAGAGGTTCTGGGAGAGGTAATTGGGGAAGAGGTAATGCACATGGAATGGGAGGTCGAGGACCGGCTGGCCCAATGAGGAGTAGGGGTGGTGGGATGGGTGGCAGAGGTATAATGGGAAATGGTGGAAATGGATTTGGCCAAGGAATTGGTGTTACCCCACCTTTATTGCATCCGCAGTCAATGATGGGTCAAGGTTTTGATCCATCTTTTGGTGCACCCATGGGAAGAATGGGCACATATGGTGGTTTTCCTGGAGCTCCGGCTCCCCCCTTCTCTGGAATTTTATCGTCCTTTCCCCCAGTTGGGGGTGTTGGCCTTCCTGGTGTAGCTCCTCATGTGAACCCAGCATTTTTTGGAAGAGGTATGCCTATGAATGGAATGGGGATGATGCCAACATCGGGTGTTGATGGGCCTAATATGGGAATGTGGTCTGATCCTAGTATGGGTGGATGGGGCAGTGAAGAGCATGGTGGAGGGAGAGCTGATGAGTCTAGTTATGGAGAAGAAGCTGGTTCTGACCAGCAATATGGCGAAGGCAGCCATGAAAGAGGGGCGTGGGCAAATTCTGCGAAGGAGAAAGATAGAGGCTCTGAAAGGGACTGGTCACAGTCTTCTGATAGAAGGTATCGAGATGATAGAGAGAGATCTAAAGAAAAAGATCCGGGGCCTGACCATGATTGGCCAGATAGAAGGCCACGTGATGATAGAGATATAGGGCGTGAAAGGGATAAAGATAGGGATCGGGATAGGGATAGAGAACGATCTCGAGATTATGAGCGTGGCCATCATGATCGTGATCGTGAACGTGACAGGGATCGTGACCGTGATAGGTACAAGGAAGATAGGGACAGATTTTCTGATCATCATAGGTACAGAGACCGGGAACCAGATCATGAGGAGGATTGGGAAAGGGGACGGTCATCAAGGACTCATAGCAAGTCCCGATTATCGCAAGAAGAAGAAAATCGCTCTAGATCAAGGGATGCTGATTATGGGAAGAGGCGGAGGCTTACTTCTGAATAG

Protein sequence

MDEGEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKNDDLGFKREEEPKMEPPAPVPPSSDASIPGVGGGATEVARLGDSGHGVSERVTEGYNQIPDLRTNEMAIRGGVGSGPPVAVGGNPGNVENEGLLRQGGGVNVNGVGGNGFGNMGSAGGGGGGTILFVGDLHWWTTDAELEAELCKYGPLKEVKFYDEKASGKSKGYCQVEFYDPSAATACKEGMNGHLFNGRPCVVAYASPFSVKRMGEAQVNRNQQMSQATNPQARRGPNEAVGKIGGSSIATGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRSRGGGMGGRGIMGNGGNGFGQGIGVTPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSSFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEEHGGGRADESSYGEEAGSDQQYGEGSHERGAWANSAKEKDRGSERDWSQSSDRRYRDDRERSKEKDPGPDHDWPDRRPRDDRDIGRERDKDRDRDRDRERSRDYERGHHDRDRERDRDRDRDRYKEDRDRFSDHHRYRDREPDHEEDWERGRSSRTHSKSRLSQEEENRSRSRDADYGKRRRLTSE

Homology

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BLAST of HG10022390 vs. NCBI nr
Match: XP_038897113.1 (uncharacterized PE-PGRS family protein PE_PGRS46-like [Benincasa hispida])

HSP 1 Score: 1178.7 bits (3048), Expect = 0.0e+00
Identity = 626/708 (88.42%), Postives = 638/708 (90.11%), Query Frame = 0


Query: 1   MDEGEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKN 60
           MDEGEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKN
Sbjct: 1   MDEGEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKN 60

Query: 61  DDLGFKREEEPKMEPPAPVPPSSDASIPGVGGGATEVARLGDSGHGVSERVTEGYNQIPD 120
           DDLGFK  EEPKMEPPAPVPPSS ASIPGVGGGATEVA LGD GH VSERVTEGYNQIPD
Sbjct: 61  DDLGFK-TEEPKMEPPAPVPPSSGASIPGVGGGATEVAGLGDGGHSVSERVTEGYNQIPD 120

Query: 121 LRTNEMAIRGGVGSGPPVAVG--------------------------------------- 180
           LRTNEMA+RGGVGSGPPV  G                                       
Sbjct: 121 LRTNEMAVRGGVGSGPPVGGGGGIRVELGQGSKTSELEERSSNNVVAHQAQHQHQQQPQP 180

Query: 181 ----------------GNPGNVENEGLLRQGGGVNVNGVGGNGFGNMGSAGGGGGGTILF 240
                           GNPG+VENEGLLRQGG +NVNGVGGN FGNMGSAGGGGGGTILF
Sbjct: 181 QPQPQHHHQPPQSGVLGNPGSVENEGLLRQGGVINVNGVGGNAFGNMGSAGGGGGGTILF 240

Query: 241 VGDLHWWTTDAELEAELCKYGPLKEVKFYDEKASGKSKGYCQVEFYDPSAATACKEGMNG 300
           VGDLHWWTTDAELE ELCKYGPLKEVKFYDEKASGKSKGYCQVEFYDPSAATACKEGMNG
Sbjct: 241 VGDLHWWTTDAELEVELCKYGPLKEVKFYDEKASGKSKGYCQVEFYDPSAATACKEGMNG 300

Query: 301 HLFNGRPCVVAYASPFSVKRMGEAQVNRNQQMSQATNPQARRGPNEAVGKIGGSSIATGG 360
           H+FNGRPCVVAYASPFSVK+MGEAQVNRNQQM+QATNPQARRGPN+AVGKIGGSSIATGG
Sbjct: 301 HIFNGRPCVVAYASPFSVKKMGEAQVNRNQQMAQATNPQARRGPNDAVGKIGGSSIATGG 360

Query: 361 NYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRSRGGGMGGRGIMGNGGNGFGQGIGVT 420
           NYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRSRGGGMGGRGIMGNGGNGFGQGIG T
Sbjct: 361 NYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRSRGGGMGGRGIMGNGGNGFGQGIGAT 420

Query: 421 PPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSSFPPVGGVGLPGVAPH 480
           PPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSSFPPVGGVGLPGVAPH
Sbjct: 421 PPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSSFPPVGGVGLPGVAPH 480

Query: 481 VNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEEHGGGRADESSYGEEAGS 540
           VNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEEHGGGRA ESSYGEEAGS
Sbjct: 481 VNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEEHGGGRAGESSYGEEAGS 540

Query: 541 DQQYGEGSHERGAWANSAKEKDRGSERDWSQSSDRRYRDDRERSKEKDPGPDHDWPDRRP 600
           DQQYGEGSHERGAWANSAKEKDRGSERDWSQSSDRRYRDDRERSKEKDPGPDHDWPDRRP
Sbjct: 541 DQQYGEGSHERGAWANSAKEKDRGSERDWSQSSDRRYRDDRERSKEKDPGPDHDWPDRRP 600

Query: 601 RDDRDIGRERDKDRDRDRDRERSRDYERGHHDRDRERDRDRDRDRYKEDRDRFSDHHRYR 654
           RDDRDIGRERDKDRDRDRDRERSRDYERGHHDR+R+RDRDRDRDRYKEDRDR+ DHHRYR
Sbjct: 601 RDDRDIGRERDKDRDRDRDRERSRDYERGHHDRERDRDRDRDRDRYKEDRDRYFDHHRYR 660

[Close]

BLAST of HG10022390 vs. NCBI nr
Match: XP_038897335.1 (cleavage and polyadenylation specificity factor subunit 6-like [Benincasa hispida] >XP_038897338.1 cleavage and polyadenylation specificity factor subunit 6-like [Benincasa hispida])

HSP 1 Score: 1173.7 bits (3035), Expect = 0.0e+00
Identity = 627/714 (87.82%), Postives = 636/714 (89.08%), Query Frame = 0


Query: 1   MDEGEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKN 60
           MDE EGGFGEGVDQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKN
Sbjct: 1   MDESEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKN 60

Query: 61  DDLGFKREEEPKMEPPAPVPPSSDASIPGVGGGATEVARLGDSGHGVSERVTEGYNQIPD 120
           DDLGFK  EEPKMEPPAP PPSS ASIPGVGGGATEVA LGD GH VSERVTEGYNQIPD
Sbjct: 61  DDLGFK-TEEPKMEPPAPAPPSSGASIPGVGGGATEVAGLGDGGHSVSERVTEGYNQIPD 120

Query: 121 LRTNEMAIRGGVGSGPPVAVG--------------------------------------- 180
           +R NEMAIRGG G GPPV  G                                       
Sbjct: 121 IRANEMAIRGGAGPGPPVGGGGGIRVELGQGSKTNELEERSNNNIAAHQAPQQQQPQLQA 180

Query: 181 ----------------GNPGNVENEGLLRQGGGVNVNGVGGNGFGNMGSAGGGGGGTILF 240
                           GNPG+VENEGLLRQGGGVNVNGVGGNGFGNMGSAGGGGGGTILF
Sbjct: 181 QPQPQHHHQPPQSGVLGNPGSVENEGLLRQGGGVNVNGVGGNGFGNMGSAGGGGGGTILF 240

Query: 241 VGDLHWWTTDAELEAELCKYGPLKEVKFYDEKASGKSKGYCQVEFYDPSAATACKEGMNG 300
           VGDLHWWTTDAELEAELCKYGPLKEVKFYDEKASGKSKGYCQVEFYDPSAATACKEGMNG
Sbjct: 241 VGDLHWWTTDAELEAELCKYGPLKEVKFYDEKASGKSKGYCQVEFYDPSAATACKEGMNG 300

Query: 301 HLFNGRPCVVAYASPFSVKRMGEAQVNRNQQMSQATNPQARRGPNEAVGKIGGSSIATGG 360
           H+FNGRPCVVAYASPFSVKRMGEAQVNRNQQMSQATNPQARRGPN+AVGKIGGS+IATGG
Sbjct: 301 HIFNGRPCVVAYASPFSVKRMGEAQVNRNQQMSQATNPQARRGPNDAVGKIGGSNIATGG 360

Query: 361 NYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRSRGGGMGGRGIMGNGGNGFGQGIGVT 420
           NYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRSRGGGMGGRGIMGNGGNGFGQGIG  
Sbjct: 361 NYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRSRGGGMGGRGIMGNGGNGFGQGIGAA 420

Query: 421 PPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSSFPPVGGVGLPGVAPH 480
           PPLLHPQSMM QGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSSFPPVGGVGLPGVAPH
Sbjct: 421 PPLLHPQSMMAQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSSFPPVGGVGLPGVAPH 480

Query: 481 VNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEEHGGGRADESSYGEEAGS 540
           VNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEEHGGGRADESSYGEEAGS
Sbjct: 481 VNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEEHGGGRADESSYGEEAGS 540

Query: 541 DQQYGEGSHERGAWANSAKEKDRGSERDWSQSSDRRYRD------DRERSKEKDPGPDHD 600
           DQQYGEGSH+RGAWANS KEKDRGSERDWSQSSDRRYRD      DRERSKEKDPGPDHD
Sbjct: 541 DQQYGEGSHDRGAWANSTKEKDRGSERDWSQSSDRRYRDDRDVGYDRERSKEKDPGPDHD 600

Query: 601 WPDRRPRDDRDIGRERDKDRDRDRDRERSRDYERGHHDRDRERDRDRDRDRYKEDRDRFS 654
           WPDRRPRDDRDIGRERDKDRDRDRDRERSRDYERGHHDRDRERDRDRDRDRYKEDRDR+S
Sbjct: 601 WPDRRPRDDRDIGRERDKDRDRDRDRERSRDYERGHHDRDRERDRDRDRDRYKEDRDRYS 660

[Close]

BLAST of HG10022390 vs. NCBI nr
Match: XP_031744545.1 (cleavage and polyadenylation specificity factor subunit CG7185-like [Cucumis sativus] >XP_031744546.1 cleavage and polyadenylation specificity factor subunit CG7185-like [Cucumis sativus] >KAE8645915.1 hypothetical protein Csa_011894 [Cucumis sativus])

HSP 1 Score: 1151.0 bits (2976), Expect = 0.0e+00
Identity = 616/721 (85.44%), Postives = 636/721 (88.21%), Query Frame = 0


Query: 1   MDEGEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKN 60
           MDEGEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRK+
Sbjct: 1   MDEGEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKS 60

Query: 61  DDLGFKREEEPKMEPPAPVPPSSDASIPGVGGGATEVARLGDS-GHGVSERVTEGYNQIP 120
           DDLGFKREEEPKMEPPAPVPPSS ASIPG+GGGATEV  LGD+ G  VSERVTEGYNQIP
Sbjct: 61  DDLGFKREEEPKMEPPAPVPPSSAASIPGIGGGATEVTGLGDAGGRTVSERVTEGYNQIP 120

Query: 121 DLRTNEMAIRGGVGSGPPVAVG-------------------------------------- 180
           DLRTNEMAIRGGVGSGPPV  G                                      
Sbjct: 121 DLRTNEMAIRGGVGSGPPVGTGVGIRVELGQGSKAIELEERSSNNVAGHQAPQQQQQQPQ 180

Query: 181 -----------------------GNPGNVENEGLLRQGGGVNVNGVGGNGFGNMGSAGGG 240
                                  GNPG+VENEGLLRQGGGVNVNGVGGNGFGN+GSAGGG
Sbjct: 181 PQPQPQPQPQPQHHHQPPQSGVLGNPGSVENEGLLRQGGGVNVNGVGGNGFGNIGSAGGG 240

Query: 241 GGGTILFVGDLHWWTTDAELEAELCKYGPLKEVKFYDEKASGKSKGYCQVEFYDPSAATA 300
           GGGTILFVGDLHWWTTDAELE ELCKYGPLKEVKFYDEKASGKSKGYCQVEFYDPSAATA
Sbjct: 241 GGGTILFVGDLHWWTTDAELEVELCKYGPLKEVKFYDEKASGKSKGYCQVEFYDPSAATA 300

Query: 301 CKEGMNGHLFNGRPCVVAYASPFSVKRMGEAQVNRNQQMSQATNPQARRGPNEAVGKIGG 360
           CKEGMNGH+FNGRPCVVAYASPFSVK+MGEAQV+RNQQ++QATNPQARR PNEAVGKIGG
Sbjct: 301 CKEGMNGHIFNGRPCVVAYASPFSVKKMGEAQVSRNQQIAQATNPQARRAPNEAVGKIGG 360

Query: 361 SSIATGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRSRGGGMGGRGIMGNGGNGF 420
           +SIATGGNYQGGDNNRGSGRGNWGR NAHGMGGRGPAG MR RGGGMGGRGIMGNGGNGF
Sbjct: 361 NSIATGGNYQGGDNNRGSGRGNWGRSNAHGMGGRGPAGQMRGRGGGMGGRGIMGNGGNGF 420

Query: 421 GQGIGVTPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSSFPPVGGVG 480
           GQGIG TPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSSFPPVGGVG
Sbjct: 421 GQGIGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSSFPPVGGVG 480

Query: 481 LPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEEHGGGRADESS 540
           LPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEE GGGRA ESS
Sbjct: 481 LPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEEQGGGRAGESS 540

Query: 541 YGEEAGSDQQYGEGSHERGAWANSAKEKDRGSERDWSQSSDRRYRD------DRERSKEK 600
           YGEEAGSDQ YGEGSHERG WANSAKEKDRGSERDWSQSSDRRYRD      DRERSKEK
Sbjct: 541 YGEEAGSDQHYGEGSHERGPWANSAKEKDRGSERDWSQSSDRRYRDDRDVGYDRERSKEK 600

Query: 601 DPGPDHDWPDRRPRDDRDIGRERDKDRDRDRDRERSRDYERGHHDRDRERDRDRDRDRYK 654
           DPGPDHDWPDRRPR+DRDIGRERDKDRDR+RDRERSRDYERGHH+RDRER+RDRDRDRYK
Sbjct: 601 DPGPDHDWPDRRPREDRDIGRERDKDRDRERDRERSRDYERGHHERDRERERDRDRDRYK 660

[Close]

BLAST of HG10022390 vs. NCBI nr
Match: TYK07956.1 (cleavage and polyadenylation specificity factor subunit 6 [Cucumis melo var. makuwa])

HSP 1 Score: 1150.2 bits (2974), Expect = 0.0e+00
Identity = 615/715 (86.01%), Postives = 636/715 (88.95%), Query Frame = 0


Query: 1   MDEGEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKN 60
           MDEGEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKN
Sbjct: 1   MDEGEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKN 60

Query: 61  DDLGFKREEEPKMEPPAPVPPSSDASIPGVGGGATEVARLGDS-GHGVSERVTEGYNQIP 120
           D LGFKREEEPKMEPPAPVPP+S ASIPG+GGGATEV  LGD+ GH VSERVTEGYNQIP
Sbjct: 61  DGLGFKREEEPKMEPPAPVPPTSGASIPGIGGGATEVTGLGDAGGHTVSERVTEGYNQIP 120

Query: 121 DLRTNEMAIRGGVGSGPPVAVG-------------------------------------- 180
           DLRTNEMAIRGG GSGPPV  G                                      
Sbjct: 121 DLRTNEMAIRGGAGSGPPVGGGVGIRVELGQGSKPIELEERSSNNVAGHQAPQQPQLQPQ 180

Query: 181 ---------------GNPGNVENEGLLRQGGGVNVNGVGGNGFGNMGSAGGGGGGTILFV 240
                          GNPG+VENEGLLRQGGGVNVNGVGGNGFGN+GSAGGG GGT+LFV
Sbjct: 181 PQPQHHHQPPQSGVLGNPGSVENEGLLRQGGGVNVNGVGGNGFGNVGSAGGGSGGTVLFV 240

Query: 241 GDLHWWTTDAELEAELCKYGPLKEVKFYDEKASGKSKGYCQVEFYDPSAATACKEGMNGH 300
           GDLHWWTTDAELE ELCKYGPLKEVKFYDEKASGKSKGYCQVEFYDPSAATACKEGMNGH
Sbjct: 241 GDLHWWTTDAELEVELCKYGPLKEVKFYDEKASGKSKGYCQVEFYDPSAATACKEGMNGH 300

Query: 301 LFNGRPCVVAYASPFSVKRMGEAQVNRNQQMSQATNPQARRGPNEAVGKIGGSSIATGGN 360
           +FNGRPCVVAYASPFSVK+MGEAQVNRNQQ++QATNPQARR PN+AVGKIGGSSIATGGN
Sbjct: 301 IFNGRPCVVAYASPFSVKKMGEAQVNRNQQIAQATNPQARRAPNDAVGKIGGSSIATGGN 360

Query: 361 YQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRSRGGGMGGRGIMGNGGNGFGQGIGVTP 420
           YQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMR RGGG+GGRGIMGNGGNGFGQGIG TP
Sbjct: 361 YQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRGRGGGIGGRGIMGNGGNGFGQGIGATP 420

Query: 421 PLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSSFPPVGGVGLPGVAPHV 480
           PLLHPQSMMGQGFDPSFGAP+GRMGTYGGFPGAPAPPFSGILSSFPPVGGVGLPGVAPHV
Sbjct: 421 PLLHPQSMMGQGFDPSFGAPIGRMGTYGGFPGAPAPPFSGILSSFPPVGGVGLPGVAPHV 480

Query: 481 NPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEEHGGGRADESSYGEEAGSD 540
           NPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEE GGGRA ESSYGEEAGSD
Sbjct: 481 NPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEEQGGGRAGESSYGEEAGSD 540

Query: 541 QQYGEGSHERGAWANSAKEKDRGSERDWSQSSDRRYRD------DRERSKEKDPGPDHDW 600
           Q YGEGSHERG WANSAKEKDRGSERDWSQSSDRRYRD      DRERSKEKDPGPDHDW
Sbjct: 541 QHYGEGSHERGPWANSAKEKDRGSERDWSQSSDRRYRDDRDVGYDRERSKEKDPGPDHDW 600

Query: 601 PDRRPRDDRDIGRERDKDRDRDRDRERSRDYERGHHDRDRERDRDRDRDRYKEDRDRFSD 654
           PDRRPRDDRDIGRERDKDRDRDRDRERSRDYERGHH+RDRER+RDRDRDRYK+DR+R+SD
Sbjct: 601 PDRRPRDDRDIGRERDKDRDRDRDRERSRDYERGHHERDRERERDRDRDRYKDDRERYSD 660

[Close]

BLAST of HG10022390 vs. NCBI nr
Match: XP_022936014.1 (cleavage and polyadenylation specificity factor subunit CG7185-like [Cucurbita moschata] >XP_022936015.1 cleavage and polyadenylation specificity factor subunit CG7185-like [Cucurbita moschata])

HSP 1 Score: 1146.3 bits (2964), Expect = 0.0e+00
Identity = 611/724 (84.39%), Postives = 631/724 (87.15%), Query Frame = 0


Query: 1   MDEGEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKN 60
           MDEGEGG G G DQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKN
Sbjct: 1   MDEGEGGLGVGADQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKN 60

Query: 61  DDLGFKREEEPKMEPPAPVPPSSDASIPGVGGGATEVARLGDSGHGVSERVTEGYNQIPD 120
           DDLGFK EEEPKMEPPA VPP+S ASIPG GGG T+V  LGD GH V+ERVTEGYNQIPD
Sbjct: 61  DDLGFKSEEEPKMEPPAAVPPTSGASIPGFGGGTTDVPGLGDGGHSVAERVTEGYNQIPD 120

Query: 121 LRTNEMAIRGGVGSGPPVAVG--------------------------------------- 180
           LRTNEMAIR G GSGPP+  G                                       
Sbjct: 121 LRTNEMAIRVGAGSGPPMGGGGGIRVELGQGSKTNELEERSSNNVAAHQAPPQQQPQPLQ 180

Query: 181 ----------------------------GNPGNVENEGLLRQGGGVNVNGVGGNGFGNMG 240
                                       GNP +VENEGLLRQGGGVNVNGVGGNGFGN+G
Sbjct: 181 QLQPPAQPQPQPQQQTQHHHQAQQGGVLGNPVSVENEGLLRQGGGVNVNGVGGNGFGNVG 240

Query: 241 SA----GGGGGGTILFVGDLHWWTTDAELEAELCKYGPLKEVKFYDEKASGKSKGYCQVE 300
           +A    GGGGGGTILFVGDLHWWTTDAELE ELCKYGPLKEVKF+DEKASGKSKGYCQVE
Sbjct: 241 NAGGGGGGGGGGTILFVGDLHWWTTDAELEVELCKYGPLKEVKFFDEKASGKSKGYCQVE 300

Query: 301 FYDPSAATACKEGMNGHLFNGRPCVVAYASPFSVKRMGEAQVNRNQQMSQATNPQARRGP 360
           FYDPSAATACKEGMNGH+FNGRPCVVAYASPFSVKRMGEAQVNRNQQM+QATNPQARRGP
Sbjct: 301 FYDPSAATACKEGMNGHMFNGRPCVVAYASPFSVKRMGEAQVNRNQQMAQATNPQARRGP 360

Query: 361 NEAVGKIGGSSIATGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRSRGGGMGGRG 420
           N+ VGK+GGSSIATGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMR+RGGGMGGRG
Sbjct: 361 NDTVGKMGGSSIATGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRNRGGGMGGRG 420

Query: 421 IMGNGGNGFGQGIGVTPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILS 480
           IMGNGGNGFGQG+G TPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILS
Sbjct: 421 IMGNGGNGFGQGMGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILS 480

Query: 481 SFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEEH 540
           SFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEEH
Sbjct: 481 SFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEEH 540

Query: 541 GGGRADESSYGEEAGSDQQYGEGSHERGAWANSAKEKDRGSERDWSQSSDRRYRDDRERS 600
           GGGRA ESSYGEEAGSDQQYGEGSHERGAWANSAKEKDRGSERDWSQSSDRRYRDDRERS
Sbjct: 541 GGGRAGESSYGEEAGSDQQYGEGSHERGAWANSAKEKDRGSERDWSQSSDRRYRDDRERS 600

Query: 601 KEKDPGPDHDWPDRRPRDDRDIGRERDKDRDRDRDRERSRDYERGHHDRDRERDRDRDRD 654
           KEKDPGPDHDWPDRRPRDDRDIGRERDKDRDRDRD+ERSRDYERGHHDRDR+RDRDRDRD
Sbjct: 601 KEKDPGPDHDWPDRRPRDDRDIGRERDKDRDRDRDKERSRDYERGHHDRDRDRDRDRDRD 660

[Close]

BLAST of HG10022390 vs. ExPASy Swiss-Prot
Match: Q2QZL4 (Splicing factor U2af large subunit B OS=Oryza sativa subsp. japonica OX=39947 GN=U2AF65B PE=3 SV=2)

HSP 1 Score: 47.0 bits (110), Expect = 9.6e-04
Identity = 59/134 (44.03%), Postives = 76/134 (56.72%), Query Frame = 0


Query: 525 DRERSKEKDPGPDHDWPDRRPRDDRDIGRERDKDRDRDRDRERSRDYERGHHDRDRERDR 584
           D++R +EKD        DR    DRD  R+R +DRDRD+D+E+ RD E     RDR+RDR
Sbjct: 33  DKDREREKD-------KDRERHRDRD--RDRGRDRDRDKDKEKDRDKE-----RDRDRDR 92

Query: 585 DRDRDRY-------KEDRDRFSDHHRYRDREP----DHEEDWERGRSSRTHSKSRLSQEE 644
           D+DRDR+       +E RDR  DH R+R R+     DHE D  R   SR+ S+SR     
Sbjct: 93  DKDRDRHHRHHRERREHRDRSDDHDRHRSRDSERRRDHERDGRRRHRSRSRSRSR---GR 149

Query: 645 ENRSRSRDADYGKR 648
           + RSRSR     KR
Sbjct: 153 DRRSRSRSRSKSKR 149

[Close]

BLAST of HG10022390 vs. ExPASy TrEMBL
Match: A0A0A0K3G6 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G104800 PE=4 SV=1)

HSP 1 Score: 1151.0 bits (2976), Expect = 0.0e+00
Identity = 615/713 (86.26%), Postives = 635/713 (89.06%), Query Frame = 0


Query: 1   MDEGEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKN 60
           MDEGEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRK+
Sbjct: 1   MDEGEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKS 60

Query: 61  DDLGFKREEEPKMEPPAPVPPSSDASIPGVGGGATEVARLGDS-GHGVSERVTEGYNQIP 120
           DDLGFKREEEPKMEPPAPVPPSS ASIPG+GGGATEV  LGD+ G  VSERVTEGYNQIP
Sbjct: 61  DDLGFKREEEPKMEPPAPVPPSSAASIPGIGGGATEVTGLGDAGGRTVSERVTEGYNQIP 120

Query: 121 DLRTNEMAIRGGVGSGPPVAVG-------------------------------------- 180
           DLRTNEMAIRGGVGSGPPV  G                                      
Sbjct: 121 DLRTNEMAIRGGVGSGPPVGTGVGIRVELGQGSKAIELEERSSNNVAGHQAPPQPQPQPQ 180

Query: 181 ---------------GNPGNVENEGLLRQGGGVNVNGVGGNGFGNMGSAGGGGGGTILFV 240
                          GNPG+VENEGLLRQGGGVNVNGVGGNGFGN+GSAGGGGGGTILFV
Sbjct: 181 PQPQHHHQPPQSGVLGNPGSVENEGLLRQGGGVNVNGVGGNGFGNIGSAGGGGGGTILFV 240

Query: 241 GDLHWWTTDAELEAELCKYGPLKEVKFYDEKASGKSKGYCQVEFYDPSAATACKEGMNGH 300
           GDLHWWTTDAELE ELCKYGPLKEVKFYDEKASGKSKGYCQVEFYD SAATACKEGMNGH
Sbjct: 241 GDLHWWTTDAELEVELCKYGPLKEVKFYDEKASGKSKGYCQVEFYDSSAATACKEGMNGH 300

Query: 301 LFNGRPCVVAYASPFSVKRMGEAQVNRNQQMSQATNPQARRGPNEAVGKIGGSSIATGGN 360
           +FNGRPCVVAYASPFSVK+MGEAQV+RNQQ++QATNPQARR PNEAVGKIGG+SIATGGN
Sbjct: 301 IFNGRPCVVAYASPFSVKKMGEAQVSRNQQIAQATNPQARRAPNEAVGKIGGNSIATGGN 360

Query: 361 YQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRSRGGGMGGRGIMGNGGNGFGQGIGVTP 420
           YQGGDNNRGSGRGNWGR NAHGMGGRGPAG MR RGGGMGGRGIMGNGGNGFGQGIG TP
Sbjct: 361 YQGGDNNRGSGRGNWGRSNAHGMGGRGPAGQMRGRGGGMGGRGIMGNGGNGFGQGIGATP 420

Query: 421 PLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSSFPPVGGVGLPGVAPHV 480
           PLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSSFPPVGGVGLPGVAPHV
Sbjct: 421 PLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSSFPPVGGVGLPGVAPHV 480

Query: 481 NPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEEHGGGRADESSYGEEAGSD 540
           NPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEE GGGRA ESSYGEEAGSD
Sbjct: 481 NPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEEQGGGRAGESSYGEEAGSD 540

Query: 541 QQYGEGSHERGAWANSAKEKDRGSERDWSQSSDRRYRD------DRERSKEKDPGPDHDW 600
           Q YGEGSHERG WANSAKEKDRGSERDWSQSSDRRYRD      DRERSKEKDPGPDHDW
Sbjct: 541 QHYGEGSHERGPWANSAKEKDRGSERDWSQSSDRRYRDDRDVGYDRERSKEKDPGPDHDW 600

Query: 601 PDRRPRDDRDIGRERDKDRDRDRDRERSRDYERGHHDRDRERDRDRDRDRYKEDRDRFSD 654
           PDRRPR+DRDIGRERDKDRDR+RDRERSRDYERGHH+RDRER+RDRDRDRYK+DRD++SD
Sbjct: 601 PDRRPREDRDIGRERDKDRDRERDRERSRDYERGHHERDRERERDRDRDRYKDDRDKYSD 660

[Close]

BLAST of HG10022390 vs. ExPASy TrEMBL
Match: A0A5D3CC60 (Cleavage and polyadenylation specificity factor subunit 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00770 PE=4 SV=1)

HSP 1 Score: 1150.2 bits (2974), Expect = 0.0e+00
Identity = 615/715 (86.01%), Postives = 636/715 (88.95%), Query Frame = 0


Query: 1   MDEGEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKN 60
           MDEGEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKN
Sbjct: 1   MDEGEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKN 60

Query: 61  DDLGFKREEEPKMEPPAPVPPSSDASIPGVGGGATEVARLGDS-GHGVSERVTEGYNQIP 120
           D LGFKREEEPKMEPPAPVPP+S ASIPG+GGGATEV  LGD+ GH VSERVTEGYNQIP
Sbjct: 61  DGLGFKREEEPKMEPPAPVPPTSGASIPGIGGGATEVTGLGDAGGHTVSERVTEGYNQIP 120

Query: 121 DLRTNEMAIRGGVGSGPPVAVG-------------------------------------- 180
           DLRTNEMAIRGG GSGPPV  G                                      
Sbjct: 121 DLRTNEMAIRGGAGSGPPVGGGVGIRVELGQGSKPIELEERSSNNVAGHQAPQQPQLQPQ 180

Query: 181 ---------------GNPGNVENEGLLRQGGGVNVNGVGGNGFGNMGSAGGGGGGTILFV 240
                          GNPG+VENEGLLRQGGGVNVNGVGGNGFGN+GSAGGG GGT+LFV
Sbjct: 181 PQPQHHHQPPQSGVLGNPGSVENEGLLRQGGGVNVNGVGGNGFGNVGSAGGGSGGTVLFV 240

Query: 241 GDLHWWTTDAELEAELCKYGPLKEVKFYDEKASGKSKGYCQVEFYDPSAATACKEGMNGH 300
           GDLHWWTTDAELE ELCKYGPLKEVKFYDEKASGKSKGYCQVEFYDPSAATACKEGMNGH
Sbjct: 241 GDLHWWTTDAELEVELCKYGPLKEVKFYDEKASGKSKGYCQVEFYDPSAATACKEGMNGH 300

Query: 301 LFNGRPCVVAYASPFSVKRMGEAQVNRNQQMSQATNPQARRGPNEAVGKIGGSSIATGGN 360
           +FNGRPCVVAYASPFSVK+MGEAQVNRNQQ++QATNPQARR PN+AVGKIGGSSIATGGN
Sbjct: 301 IFNGRPCVVAYASPFSVKKMGEAQVNRNQQIAQATNPQARRAPNDAVGKIGGSSIATGGN 360

Query: 361 YQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRSRGGGMGGRGIMGNGGNGFGQGIGVTP 420
           YQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMR RGGG+GGRGIMGNGGNGFGQGIG TP
Sbjct: 361 YQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRGRGGGIGGRGIMGNGGNGFGQGIGATP 420

Query: 421 PLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSSFPPVGGVGLPGVAPHV 480
           PLLHPQSMMGQGFDPSFGAP+GRMGTYGGFPGAPAPPFSGILSSFPPVGGVGLPGVAPHV
Sbjct: 421 PLLHPQSMMGQGFDPSFGAPIGRMGTYGGFPGAPAPPFSGILSSFPPVGGVGLPGVAPHV 480

Query: 481 NPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEEHGGGRADESSYGEEAGSD 540
           NPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEE GGGRA ESSYGEEAGSD
Sbjct: 481 NPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEEQGGGRAGESSYGEEAGSD 540

Query: 541 QQYGEGSHERGAWANSAKEKDRGSERDWSQSSDRRYRD------DRERSKEKDPGPDHDW 600
           Q YGEGSHERG WANSAKEKDRGSERDWSQSSDRRYRD      DRERSKEKDPGPDHDW
Sbjct: 541 QHYGEGSHERGPWANSAKEKDRGSERDWSQSSDRRYRDDRDVGYDRERSKEKDPGPDHDW 600

Query: 601 PDRRPRDDRDIGRERDKDRDRDRDRERSRDYERGHHDRDRERDRDRDRDRYKEDRDRFSD 654
           PDRRPRDDRDIGRERDKDRDRDRDRERSRDYERGHH+RDRER+RDRDRDRYK+DR+R+SD
Sbjct: 601 PDRRPRDDRDIGRERDKDRDRDRDRERSRDYERGHHERDRERERDRDRDRYKDDRERYSD 660

[Close]

BLAST of HG10022390 vs. ExPASy TrEMBL
Match: A0A6J1F726 (cleavage and polyadenylation specificity factor subunit CG7185-like OS=Cucurbita moschata OX=3662 GN=LOC111442737 PE=4 SV=1)

HSP 1 Score: 1146.3 bits (2964), Expect = 0.0e+00
Identity = 611/724 (84.39%), Postives = 631/724 (87.15%), Query Frame = 0


Query: 1   MDEGEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKN 60
           MDEGEGG G G DQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKN
Sbjct: 1   MDEGEGGLGVGADQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKN 60

Query: 61  DDLGFKREEEPKMEPPAPVPPSSDASIPGVGGGATEVARLGDSGHGVSERVTEGYNQIPD 120
           DDLGFK EEEPKMEPPA VPP+S ASIPG GGG T+V  LGD GH V+ERVTEGYNQIPD
Sbjct: 61  DDLGFKSEEEPKMEPPAAVPPTSGASIPGFGGGTTDVPGLGDGGHSVAERVTEGYNQIPD 120

Query: 121 LRTNEMAIRGGVGSGPPVAVG--------------------------------------- 180
           LRTNEMAIR G GSGPP+  G                                       
Sbjct: 121 LRTNEMAIRVGAGSGPPMGGGGGIRVELGQGSKTNELEERSSNNVAAHQAPPQQQPQPLQ 180

Query: 181 ----------------------------GNPGNVENEGLLRQGGGVNVNGVGGNGFGNMG 240
                                       GNP +VENEGLLRQGGGVNVNGVGGNGFGN+G
Sbjct: 181 QLQPPAQPQPQPQQQTQHHHQAQQGGVLGNPVSVENEGLLRQGGGVNVNGVGGNGFGNVG 240

Query: 241 SA----GGGGGGTILFVGDLHWWTTDAELEAELCKYGPLKEVKFYDEKASGKSKGYCQVE 300
           +A    GGGGGGTILFVGDLHWWTTDAELE ELCKYGPLKEVKF+DEKASGKSKGYCQVE
Sbjct: 241 NAGGGGGGGGGGTILFVGDLHWWTTDAELEVELCKYGPLKEVKFFDEKASGKSKGYCQVE 300

Query: 301 FYDPSAATACKEGMNGHLFNGRPCVVAYASPFSVKRMGEAQVNRNQQMSQATNPQARRGP 360
           FYDPSAATACKEGMNGH+FNGRPCVVAYASPFSVKRMGEAQVNRNQQM+QATNPQARRGP
Sbjct: 301 FYDPSAATACKEGMNGHMFNGRPCVVAYASPFSVKRMGEAQVNRNQQMAQATNPQARRGP 360

Query: 361 NEAVGKIGGSSIATGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRSRGGGMGGRG 420
           N+ VGK+GGSSIATGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMR+RGGGMGGRG
Sbjct: 361 NDTVGKMGGSSIATGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRNRGGGMGGRG 420

Query: 421 IMGNGGNGFGQGIGVTPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILS 480
           IMGNGGNGFGQG+G TPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILS
Sbjct: 421 IMGNGGNGFGQGMGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILS 480

Query: 481 SFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEEH 540
           SFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEEH
Sbjct: 481 SFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEEH 540

Query: 541 GGGRADESSYGEEAGSDQQYGEGSHERGAWANSAKEKDRGSERDWSQSSDRRYRDDRERS 600
           GGGRA ESSYGEEAGSDQQYGEGSHERGAWANSAKEKDRGSERDWSQSSDRRYRDDRERS
Sbjct: 541 GGGRAGESSYGEEAGSDQQYGEGSHERGAWANSAKEKDRGSERDWSQSSDRRYRDDRERS 600

Query: 601 KEKDPGPDHDWPDRRPRDDRDIGRERDKDRDRDRDRERSRDYERGHHDRDRERDRDRDRD 654
           KEKDPGPDHDWPDRRPRDDRDIGRERDKDRDRDRD+ERSRDYERGHHDRDR+RDRDRDRD
Sbjct: 601 KEKDPGPDHDWPDRRPRDDRDIGRERDKDRDRDRDKERSRDYERGHHDRDRDRDRDRDRD 660

[Close]

BLAST of HG10022390 vs. ExPASy TrEMBL
Match: A0A6J1ILS2 (cleavage and polyadenylation specificity factor subunit 6-like OS=Cucurbita maxima OX=3661 GN=LOC111476425 PE=4 SV=1)

HSP 1 Score: 1143.3 bits (2956), Expect = 0.0e+00
Identity = 610/722 (84.49%), Postives = 629/722 (87.12%), Query Frame = 0


Query: 1   MDEGEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKN 60
           MDEGEGG G G DQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKN
Sbjct: 1   MDEGEGGLGVGADQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKN 60

Query: 61  DDLGFKREEEPKMEPPAPVPPSSDASIPGVGGGATEVARLGDSGHGVSERVTEGYNQIPD 120
           DDLGFK EEEPKMEPPA VPP+S ASIPG GGG T+V  LGD GH V+ERVTEGYNQIPD
Sbjct: 61  DDLGFKSEEEPKMEPPAAVPPTSGASIPGFGGGTTDVPGLGDGGHSVAERVTEGYNQIPD 120

Query: 121 LRTNEMAIRGGVGSGPPVAVG--------------------------------------- 180
           LR NEMAIR G GSGPP+  G                                       
Sbjct: 121 LRANEMAIRVGAGSGPPIGGGGGIRVELGQGSKTNELEERSSNNVAAHQAPQQQQPQPQQ 180

Query: 181 --------------------------GNPGNVENEGLLRQGGGVNVNGVGGNGFGNMGSA 240
                                     GNP +VENEGLLRQGGGVNVNGVGGNGFGN+GSA
Sbjct: 181 QLQPPAQPQPQQQTQHHHQAQQGGVLGNPVSVENEGLLRQGGGVNVNGVGGNGFGNVGSA 240

Query: 241 ----GGGGGGTILFVGDLHWWTTDAELEAELCKYGPLKEVKFYDEKASGKSKGYCQVEFY 300
               GGGGGGTILFVGDLHWWTTDAELE ELCKYGPLKEVKF+DEKASGKSKGYCQVEFY
Sbjct: 241 GGGGGGGGGGTILFVGDLHWWTTDAELEVELCKYGPLKEVKFFDEKASGKSKGYCQVEFY 300

Query: 301 DPSAATACKEGMNGHLFNGRPCVVAYASPFSVKRMGEAQVNRNQQMSQATNPQARRGPNE 360
           DPSAATACKEGMNGH+FNGRPCVVAYASPFSVKRMGEAQVNRNQQM+QATNPQARRGPN+
Sbjct: 301 DPSAATACKEGMNGHMFNGRPCVVAYASPFSVKRMGEAQVNRNQQMAQATNPQARRGPND 360

Query: 361 AVGKIGGSSIATGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRSRGGGMGGRGIM 420
            VGK+GGSSIATGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMR+RGGGMGGRGIM
Sbjct: 361 TVGKMGGSSIATGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRNRGGGMGGRGIM 420

Query: 421 GNGGNGFGQGIGVTPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSSF 480
           GNGGNGFGQG+G TPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSSF
Sbjct: 421 GNGGNGFGQGMGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSSF 480

Query: 481 PPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEEHGG 540
           PPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEEHGG
Sbjct: 481 PPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEEHGG 540

Query: 541 GRADESSYGEEAGSDQQYGEGSHERGAWANSAKEKDRGSERDWSQSSDRRYRDDRERSKE 600
           GRA ESSYGEEAGSDQQYGEGSHERGAWANSAKEKDRGSERDWSQSSDRRYRDDRERSKE
Sbjct: 541 GRAGESSYGEEAGSDQQYGEGSHERGAWANSAKEKDRGSERDWSQSSDRRYRDDRERSKE 600

Query: 601 KDPGPDHDWPDRRPRDDRDIGRERDKDRDRDRDRERSRDYERGHHDRDRERDRDRDRDRY 654
           KD GPDHDWPDRRPRDDRDIGRERDKDRDRDRD+ERSRDYERGHHDRDR+RDRDRDRDRY
Sbjct: 601 KDLGPDHDWPDRRPRDDRDIGRERDKDRDRDRDKERSRDYERGHHDRDRDRDRDRDRDRY 660

[Close]

BLAST of HG10022390 vs. ExPASy TrEMBL
Match: A0A6J1CCR1 (cleavage and polyadenylation specificity factor subunit 6 OS=Momordica charantia OX=3673 GN=LOC111010455 PE=4 SV=1)

HSP 1 Score: 1113.6 bits (2879), Expect = 0.0e+00
Identity = 597/713 (83.73%), Postives = 625/713 (87.66%), Query Frame = 0


Query: 1   MDEGEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKN 60
           MDEGEGGFGEGVDQIDQFHRNEAISAVAD+GFLGEDEDEYEDLYNDVNVGEGFLQSLRKN
Sbjct: 1   MDEGEGGFGEGVDQIDQFHRNEAISAVADEGFLGEDEDEYEDLYNDVNVGEGFLQSLRKN 60

Query: 61  DDLGFKREEE-PKMEPPAPVPPSSDASIPGVGGGATEVARLGDSGHGVSERVTEGYNQIP 120
           DDLGF+ EEE PK+EPPA + PSS ASIPGVGGGATEVA LGD GH V ERVTEGYNQIP
Sbjct: 61  DDLGFRNEEEPPKIEPPATLAPSSGASIPGVGGGATEVASLGDGGHSVPERVTEGYNQIP 120

Query: 121 DLRTNEMAIRGGVGSGPPVAVG-------------------------------------- 180
           DLRTNEMA+RGG GSGPP+  G                                      
Sbjct: 121 DLRTNEMAMRGGAGSGPPMGGGGGIRVELGQGSKTNELEERSSNNVAVHQAPQQPQPQPQ 180

Query: 181 ---------------------GNPGNVENEGLLRQGGGVNVNGVGGNGFGNMGSAGGGGG 240
                                GNPG+VEN+GLLRQ GGVNVNGVGGNG+GNMGSAGGGGG
Sbjct: 181 QQQQQQQPQQHHHQPLHSGVLGNPGSVENDGLLRQ-GGVNVNGVGGNGYGNMGSAGGGGG 240

Query: 241 GTILFVGDLHWWTTDAELEAELCKYGPLKEVKFYDEKASGKSKGYCQVEFYDPSAATACK 300
           GTILFVGDLHWWTTDAELE ELCKYGPLKEVKF+DEKASGKSKGYCQVEFYDPSAATACK
Sbjct: 241 GTILFVGDLHWWTTDAELEVELCKYGPLKEVKFFDEKASGKSKGYCQVEFYDPSAATACK 300

Query: 301 EGMNGHLFNGRPCVVAYASPFSVKRMGEAQVNRNQQMSQATNPQARRGPNEAVGKIGGSS 360
           EGMNGH+FNGRPCVVA+ASPFSVK+MGEAQVNRNQQ++QA NPQARRGPN+AVGKIGGS+
Sbjct: 301 EGMNGHVFNGRPCVVAFASPFSVKKMGEAQVNRNQQIAQAANPQARRGPNDAVGKIGGSN 360

Query: 361 IATGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRSRGGGMGGRGIMGNGGNGFGQ 420
           I TGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMR+RGGGMGGRGIMGNGGNGFGQ
Sbjct: 361 IQTGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRNRGGGMGGRGIMGNGGNGFGQ 420

Query: 421 GIGVTPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSSFPPVGGVGLP 480
           GIG TPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSSFPPVGGVGLP
Sbjct: 421 GIGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSSFPPVGGVGLP 480

Query: 481 GVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEEHGGGRADESSYG 540
           GVAPHVNPAFFGRGMPMNGMGMM  SGVDGPNMGMWSDPSMGGWGSEEHGGGRA ESSYG
Sbjct: 481 GVAPHVNPAFFGRGMPMNGMGMMAPSGVDGPNMGMWSDPSMGGWGSEEHGGGRAGESSYG 540

Query: 541 EEAGSDQQYGEGSHERGAWANSAKEKDRGSERDWSQSSDRRYRDDRERSKEKDPGPDHDW 600
           EEAGSDQQYGEGSH+RG WANSAKEKDRGSERDWSQSSDRRYRDDRERSKEKDPGPDHDW
Sbjct: 541 EEAGSDQQYGEGSHDRGGWANSAKEKDRGSERDWSQSSDRRYRDDRERSKEKDPGPDHDW 600

Query: 601 PDRRPRDDRDIGRERDKDRDRDRDRERSRDYERGHHDRDRERDRDRDRDRYKEDRDRFSD 654
            DRRPRDDRD+GRERDK  DRDRDRE SRDYERGH   DR+RDRDRDRDR+KEDRDR+SD
Sbjct: 601 QDRRPRDDRDVGRERDK--DRDRDRELSRDYERGH---DRDRDRDRDRDRHKEDRDRYSD 660

[Close]

BLAST of HG10022390 vs. TAIR 10
Match: AT5G55670.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 642.5 bits (1656), Expect = 3.7e-184
Identity = 423/731 (57.87%), Postives = 506/731 (69.22%), Query Frame = 0


Query: 1   MDEGEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDE-DEYEDLYNDVNVGEGFLQSLRK 60
           MDEG+G      DQ+DQFH+NEAISAVADDGF+ E+E D+YEDLYNDVNVGEGFLQS++K
Sbjct: 1   MDEGDGR-----DQMDQFHQNEAISAVADDGFMAEEEDDDYEDLYNDVNVGEGFLQSMKK 60

Query: 61  NDDLGFKREEEPK--MEPPAPVPP-----SSDASIPGVGGGATEVARLGDSGHGVSERVT 120
           ND+ G + EE+ K  ME    V P         SIPG+ G + E     +SG G S   T
Sbjct: 61  NDEAGSRNEEKEKVNMEEEDRVEPVLGEAEVSISIPGLVGESVEKEAEAESGGGGSGSGT 120

Query: 121 E------GYNQIPDLRTNEMA--IRGGVGSG----------------------------- 180
           +      GY    +++ ++++  I GG+G+G                             
Sbjct: 121 DVVVASSGYG-AQEVKVSDVSQEIPGGIGTGTGGGLRVELGQASNRANDLEAPRGNNISQ 180

Query: 181 ----PPVAVGGNP-------GNVENEGLLRQGGGVNVNGVGGN----GFGNMGSAGGGGG 240
               PP  +G N        GNV   G +  G G N+ G G N    G    G+ GGGGG
Sbjct: 181 GLLPPPPVLGNNENLMRPVMGNV--NGGIPPGPGSNMVGNGANIAMPGVVGGGTGGGGGG 240

Query: 241 GTILFVGDLHWWTTDAELEAELCKYGPLKEVKFYDEKASGKSKGYCQVEFYDPSAATACK 300
           G  LFVGDLHWWTTDAELEAELCKYG +KEVKF+DEKASGKSKGYCQVEFYDP AA+ACK
Sbjct: 241 GAFLFVGDLHWWTTDAELEAELCKYGAVKEVKFFDEKASGKSKGYCQVEFYDPVAASACK 300

Query: 301 EGMNGHLFNGRPCVVAYASPFSVKRMGEAQVNRNQQMSQATNPQARRG--------PNEA 360
           + +NG+ FNGRPCVV YASP+SVKRMGEAQVNR QQ +Q+   QA+RG        P  A
Sbjct: 301 DALNGYPFNGRPCVVEYASPYSVKRMGEAQVNRTQQ-AQSVIAQAKRGGPADPPSKPLVA 360

Query: 361 VGKIGGSSIATGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRSRGGGMGGRGIMG 420
                 ++ A GGN+QGG+ NRG GRGNWGRGNA GMGGRGP GPMR+R  GMGGRG+MG
Sbjct: 361 NNNNNNNNNAIGGNFQGGE-NRGFGRGNWGRGNAQGMGGRGPGGPMRNRPNGMGGRGLMG 420

Query: 421 NGGNGFGQGIGVTPPL-LHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSSF 480
           NG  GFGQG+G  PP+ +  Q MMGQGF+ +FG PM RMG YGGFPGAP P F G+LSSF
Sbjct: 421 NG--GFGQGMGTGPPMNMMHQPMMGQGFEQAFGGPMARMGGYGGFPGAPGPQFPGLLSSF 480

Query: 481 PPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVD-GPNMGMWSDPSMGGWGS-EEH 540
           PPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMP +GVD G NMGMW DP+ GGWG+ E+ 
Sbjct: 481 PPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPNAGVDGGHNMGMW-DPNSGGWGAGEDL 540

Query: 541 GGGRADESSYGEEAGSDQQYGEGSHERGAWANSAKEKDRGSERDWSQSSDRRYRDD---- 600
           G GRA ESSYGEEA SD QYGE +HERGA  N  KEK+R SER+WS SSDRR R+D    
Sbjct: 541 GSGRAAESSYGEEAASDHQYGEVNHERGARPNPVKEKERASEREWSGSSDRRNREDKDAG 600

Query: 601 --RERSKEKDPGPDHDWPDRRPRDDRDIGRERDKDRDRDRDRERSRDYERGHHDRDRERD 654
             R+  +EKD G  +D P+RR RDDRD GRER+++    +DRERSR+     H RDRE  
Sbjct: 601 YERDIPREKDVGHGYDMPERRHRDDRDTGREREREH-HHKDRERSRE-----HVRDRE-- 660

[Close]

BLAST of HG10022390 vs. TAIR 10
Match: AT5G55670.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 420.2 bits (1079), Expect = 3.0e-117
Identity = 329/728 (45.19%), Postives = 401/728 (55.08%), Query Frame = 0


Query: 1   MDEGEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDE-DEYEDLYNDVNVGEGFLQSLRK 60
           MDEG+G      DQ+DQFH+NEAISAVADDGF+ E+E D+YEDLYNDVNVGEGFLQS++K
Sbjct: 1   MDEGDGR-----DQMDQFHQNEAISAVADDGFMAEEEDDDYEDLYNDVNVGEGFLQSMKK 60

Query: 61  NDDLGFKREEEPK--MEPPAPVPP-----SSDASIPGVGGGATEVARLGDSGHGVSERVT 120
           ND+ G + EE+ K  ME    V P         SIPG+ G + E     +SG G S   T
Sbjct: 61  NDEAGSRNEEKEKVNMEEEDRVEPVLGEAEVSISIPGLVGESVEKEAEAESGGGGSGSGT 120

Query: 121 E------GYNQIPDLRTNEMA--IRGGVGSG----------------------------- 180
           +      GY    +++ ++++  I GG+G+G                             
Sbjct: 121 DVVVASSGYG-AQEVKVSDVSQEIPGGIGTGTGGGLRVELGQASNRANDLEAPRGNNISQ 180

Query: 181 ----PPVAVGGNP-------GNVENEGLLRQGGGVNVNGVGGN----GFGNMGSAGGGGG 240
               PP  +G N        GNV   G +  G G N+ G G N    G    G+ GGGGG
Sbjct: 181 GLLPPPPVLGNNENLMRPVMGNV--NGGIPPGPGSNMVGNGANIAMPGVVGGGTGGGGGG 240

Query: 241 GTILFVGDLHWWTTDAELEAELCKYGPLKEVKFYDEKASGKSKGYCQVEFYDPSAATACK 300
           G  LFVGDLHWWTTDAELEAELCKYG +KEVKF+DEKASGKSKGYCQVEFYDP AA+ACK
Sbjct: 241 GAFLFVGDLHWWTTDAELEAELCKYGAVKEVKFFDEKASGKSKGYCQVEFYDPVAASACK 300

Query: 301 EGMNGHLFNGRPCVVAYASPFSVKRMGEAQVNRNQQMSQATNPQARRG--------PNEA 360
           + +NG+ FNGRPCVV YASP+SVKRMGEAQVNR QQ +Q+   QA+RG        P  A
Sbjct: 301 DALNGYPFNGRPCVVEYASPYSVKRMGEAQVNRTQQ-AQSVIAQAKRGGPADPPSKPLVA 360

Query: 361 VGKIGGSSIATGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRSRGGGMGGRGIMG 420
                 ++ A GGN+QGG+ NRG GRGNWGRGNA GMGGRGP GPMR+R  GM       
Sbjct: 361 NNNNNNNNNAIGGNFQGGE-NRGFGRGNWGRGNAQGMGGRGPGGPMRNRPNGM------- 420

Query: 421 NGGNGFGQGIGVTPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSSFP 480
                                                                       
Sbjct: 421 ------------------------------------------------------------ 480

Query: 481 PVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEEHGGG 540
                                                                     GG
Sbjct: 481 ----------------------------------------------------------GG 540

Query: 541 RADESSYGEEAGSDQQYGEGSHERGAWANSAKEKDRGSERDWSQSSDRRYRDD------R 600
           RA ESSYGEEA SD QYGE +HERGA  N  KEK+R SER+WS SSDRR R+D      R
Sbjct: 541 RAAESSYGEEAASDHQYGEVNHERGARPNPVKEKERASEREWSGSSDRRNREDKDAGYER 585

Query: 601 ERSKEKDPGPDHDWPDRRPRDDRDIGRERDKDRDRDRDRERSRDYERGHHDRDRERDRDR 654
           +  +EKD G  +D P+RR RDDRD GRER+++    +DRERSR+     H RDRE  R+R
Sbjct: 601 DIPREKDVGHGYDMPERRHRDDRDTGREREREH-HHKDRERSRE-----HVRDRE--RER 585

[Close]

BLAST of HG10022390 vs. TAIR 10
Match: AT1G13190.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 243.4 bits (620), Expect = 5.0e-64
Identity = 258/679 (38.00%), Postives = 346/679 (50.96%), Query Frame = 0


Query: 24  ISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKNDDLGFKREEEPKMEPPAPVPPSS 83
           I A+AD+  +G D+DEY+DLY+DVNVGE F           F+   +P  +PPA V  +S
Sbjct: 21  IPALADEELMG-DDDEYDDLYSDVNVGESF-----------FQAHNQP--QPPAQV-NTS 80

Query: 84  DASIPG-------------VGGGATEVARLGDSGH-GVS--ERVTEGYNQIP-------- 143
           +AS+               V GG  E     D GH G+S  +  ++ Y Q          
Sbjct: 81  NASLQAQNSHVAAEPRMGIVSGGTVEGKYRNDGGHNGISGPDTRSDVYPQASSFGAKGLN 140

Query: 144 -DLRTNEMAIRGGVG--------SGPPVAVGGNPGNVENEGLLRQGG---GVNVNGVGGN 203
            D+++N++A +G           SG  V V   P +  + G   QG     V+   V  N
Sbjct: 141 IDIQSNKIAQQGSTTVVLNNHGFSGNAVNVPEMPVH-NSYGAPPQGAQQIPVSQMSVNPN 200

Query: 204 GFGNMGSAGG---GGGGTILFVGDLHWWTTDAELEAELCKYGPLKEVKFYDEKASGKSKG 263
              N           G T+LFVG+LHWWTTDAE+E+ L +YG +KE+KF+DE+ SGKSKG
Sbjct: 201 VMMNKSPTQSFVVDNGNTMLFVGELHWWTTDAEIESVLSQYGRVKEIKFFDERVSGKSKG 260

Query: 264 YCQVEFYDPSAATACKEGMNGHLFNGRPCVVAYASPFSVKRMGEAQVNRNQQMSQATNPQ 323
           YCQVEFYD +AA ACKEGMNG +FNG+ CVVA+ASP ++K+MG     RNQ  +Q  N  
Sbjct: 261 YCQVEFYDSAAAAACKEGMNGFIFNGKACVVAFASPETLKQMGANFTGRNQGQNQIQN-- 320

Query: 324 ARRGPNEAVGKIGGSSIATGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRSRGGG 383
            RR  NE +G+  G++     N Q GD  R  GRG + RG   GMG RG A      GG 
Sbjct: 321 -RRPLNEGMGR--GNNNNNNMNTQNGDGGRNYGRGGFARG-GQGMGNRGGAW-----GGA 380

Query: 384 MGGRGI--MGNGGNGFGQGIGVTPP----LLHPQSMMGQ-GFDPSFGAPMGRMGTYGGFP 443
           M GRG+  M +G      G G+  P    ++HPQ MMG  GFDP+F   MGR   YGG+ 
Sbjct: 381 MRGRGVNNMASGSGAGPYGPGLAGPAFGGMMHPQGMMGAGGFDPTF---MGRGAGYGGYS 440

Query: 444 GAPAPPFSGILSSFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPN-MGMW 503
           G   P   G+  S+P V  +G+ G+APHVNPAFFG      GMG M +SG++G +   MW
Sbjct: 441 GIAYP---GMPHSYPGVNAMGMVGIAPHVNPAFFG-----TGMGTMGSSGMNGVHAAAMW 500

Query: 504 SDPSMGGWGSEEHG---GGRADESSYGEEAGSDQQYGEGSHERGAWANSAKEKDRG-SER 563
           S+ +  G G EE G   GG  DE+   EE  S                  ++K+R  +ER
Sbjct: 501 SEAN--GGGGEEGGSEYGGYEDETQEKEEKPS------------------RDKERATTER 560

Query: 564 DWSQSS-DRRYRDDRERSKEKDPGPDHDWPDRRPRDDRDIGRERDKDRDRDRDRERSRDY 623
           DWS++S DRR++  RE                          E+D  R+           
Sbjct: 561 DWSENSGDRRHKSHRE--------------------------EKDSHRE----------- 571

Query: 624 ERGHHDRDRERDRDRDRDRYKEDRDRFSDHHRYRDREPDHEEDWERGRSS-RTHSKSRLS 650
                              YK+ RDR SD             +++RG+SS ++ S+SR+S
Sbjct: 621 -------------------YKQQRDRDSD-------------EFDRGQSSLKSRSRSRMS 571

[Close]

BLAST of HG10022390 vs. TAIR 10
Match: AT1G60900.1 (U2 snRNP auxilliary factor, large subunit, splicing factor )

HSP 1 Score: 43.5 bits (101), Expect = 7.5e-04
Identity = 59/157 (37.58%), Postives = 77/157 (49.04%), Query Frame = 0


Query: 493 SHERGAWANSAKEKDRGSERDWSQSSDRRYRDDRERSKEKDPGPDHDWPDRRPRDDRDIG 552
           SH+    ++   EKD  + RD   + DR    DR+R K +D                   
Sbjct: 39  SHDLKKDSSKISEKDNENGRDKDGNKDRDREKDRDREKSRD------------------- 98

Query: 553 RERDKDRDRDRDRERSRDYERGHHDRDRERDRDRDRDRYKEDRDRFSDHH-RYRDREPDH 612
           R+R+K RDRDRDRERS+D +R  H RDR RDR R+R   ++D D   DHH R RDR+   
Sbjct: 99  RDREKSRDRDRDRERSKDRQRDRHHRDRHRDRSRERSEKRDDLD--DDHHRRSRDRDRRR 158

Query: 613 EEDWERGRSSRTHSKSRLSQEEENRSRSRDADYGKRR 649
             D +R    R  S+SR     E RSRS      + R
Sbjct: 159 SRDRDREVRHRRRSRSRSRSRSERRSRSEHRHKSEHR 174

The following BLAST results are available for this feature:

BLAST of HG10022390 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038897113.1	0.0e+00	88.42	uncharacterized PE-PGRS family protein PE_PGRS46-like [Benincasa hispida]	[more]
XP_038897335.1	0.0e+00	87.82	cleavage and polyadenylation specificity factor subunit 6-like [Benincasa hispid...	[more]
XP_031744545.1	0.0e+00	85.44	cleavage and polyadenylation specificity factor subunit CG7185-like [Cucumis sat...	[more]
TYK07956.1	0.0e+00	86.01	cleavage and polyadenylation specificity factor subunit 6 [Cucumis melo var. mak...	[more]
XP_022936014.1	0.0e+00	84.39	cleavage and polyadenylation specificity factor subunit CG7185-like [Cucurbita m...	[more]

BLAST of HG10022390 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q2QZL4	9.6e-04	44.03	Splicing factor U2af large subunit B OS=Oryza sativa subsp. japonica OX=39947 GN...	[more]

BLAST of HG10022390 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K3G6	0.0e+00	86.26	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G104800 PE=4 SV...	[more]
A0A5D3CC60	0.0e+00	86.01	Cleavage and polyadenylation specificity factor subunit 6 OS=Cucumis melo var. m...	[more]
A0A6J1F726	0.0e+00	84.39	cleavage and polyadenylation specificity factor subunit CG7185-like OS=Cucurbita...	[more]
A0A6J1ILS2	0.0e+00	84.49	cleavage and polyadenylation specificity factor subunit 6-like OS=Cucurbita maxi...	[more]
A0A6J1CCR1	0.0e+00	83.73	cleavage and polyadenylation specificity factor subunit 6 OS=Momordica charantia...	[more]

BLAST of HG10022390 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G55670.1	3.7e-184	57.87	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G55670.2	3.0e-117	45.19	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G13190.1	5.0e-64	38.00	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G60900.1	7.5e-04	37.58	U2 snRNP auxilliary factor, large subunit, splicing factor	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 183..256 e-value: 9.1E-20 score: 81.7
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 184..253 e-value: 1.9E-13 score: 50.1
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 182..260 score: 13.668936
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 175..270 e-value: 1.4E-21 score: 79.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 498..653
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 449..653
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 273..371
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 58..96
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 301..319
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 60..74
None	No IPR available	PANTHER	PTHR23204:SF9	CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 6-LIKE	coord: 1..652
None	No IPR available	CDD	cd12372	RRM_CFIm68_CFIm59	coord: 184..257 e-value: 5.35705E-34 score: 122.019
IPR034772	CPSF6/7 family	PANTHER	PTHR23204	CLEAVAGE AND POLYADENYLATION SPECIFIC FACTOR	coord: 1..652
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 181..278

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10022390.1	HG10022390.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding